Wall clock time and date at job start Wed Apr 15 2020 11:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30861 * 125.88731 * 2 1 4 4 C 1.33694 * 109.77156 * 180.02562 * 3 2 1 5 5 S 1.76204 * 125.61857 * 179.97438 * 4 3 2 6 6 C 1.81399 * 102.99728 * 180.02562 * 5 4 3 7 7 C 1.50696 * 109.47053 * 179.97438 * 6 5 4 8 8 O 1.21298 * 120.00254 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00425 * 179.97438 * 7 6 5 10 10 C 1.37093 * 120.00503 * 180.02562 * 9 7 6 11 11 H 1.08004 * 119.99890 * 322.48221 * 10 9 7 12 12 C 1.38948 * 119.99942 * 142.47862 * 10 9 7 13 13 N 1.31417 * 119.99764 * 157.59140 * 12 10 9 14 14 Si 1.86795 * 120.00247 * 337.58240 * 12 10 9 15 15 H 1.48501 * 109.46951 * 95.70842 * 14 12 10 16 16 H 1.48495 * 109.47426 * 215.70777 * 14 12 10 17 17 H 1.48506 * 109.47170 * 335.70969 * 14 12 10 18 18 C 1.46504 * 119.99832 * 0.02562 * 9 7 6 19 19 C 1.47205 * 109.46840 * 83.78784 * 18 9 7 20 20 N 7.68880 * 157.91468 * 237.79952 * 2 1 3 21 21 N 1.31252 * 108.76109 * 0.22602 * 4 3 2 22 22 N 1.34352 * 125.88589 * 180.02562 * 2 1 3 23 23 H 0.97000 * 126.75305 * 0.02562 * 22 2 1 24 24 H 1.08997 * 109.47628 * 89.97591 * 1 2 3 25 25 H 1.09000 * 109.47206 * 209.97952 * 1 2 3 26 26 H 1.09004 * 109.47084 * 329.97594 * 1 2 3 27 27 H 1.09000 * 109.47205 * 300.00104 * 6 5 4 28 28 H 1.09003 * 109.47159 * 60.00221 * 6 5 4 29 29 H 0.97001 * 119.99540 * 180.02562 * 13 12 10 30 30 H 1.08993 * 109.47451 * 203.79203 * 18 9 7 31 31 H 1.09006 * 109.47208 * 323.79486 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0602 0.0000 4 6 3.5585 0.6891 -0.0006 5 16 4.9419 1.7803 -0.0014 6 6 6.3569 0.6452 -0.0027 7 6 7.6378 1.4392 -0.0042 8 8 7.5999 2.6516 -0.0039 9 7 8.8255 0.8022 -0.0048 10 6 9.9908 1.5245 -0.0056 11 1 10.0586 2.4395 -0.5754 12 6 11.0845 1.0794 0.7267 13 7 12.2952 1.4789 0.4080 14 14 10.8340 -0.0867 2.1644 15 1 11.0377 -1.4852 1.7086 16 1 11.8112 0.2319 3.2362 17 1 9.4540 0.0663 2.6912 18 6 8.8714 -0.6621 -0.0046 19 6 8.7358 -1.1574 -1.3842 20 7 8.6316 -1.5405 -2.4462 21 7 3.6191 -0.6220 -0.0058 22 7 2.2945 -1.0885 -0.0005 23 1 2.0051 -2.0143 -0.0012 24 1 -0.3634 0.0004 -1.0276 25 1 -0.3633 -0.8902 0.5135 26 1 -0.3633 0.8898 0.5142 27 1 6.3195 0.0169 0.8872 28 1 6.3181 0.0173 -0.8928 29 1 13.0588 1.1679 0.9190 30 1 9.8228 -0.9958 0.4094 31 1 8.0543 -1.0512 0.6030 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342726601.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:48 Heat of formation + Delta-G solvation = 75.864804 kcal Electronic energy + Delta-G solvation = -18744.223320 eV Core-core repulsion = 15575.110855 eV Total energy + Delta-G solvation = -3169.112464 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.069 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.10623 -40.89942 -38.02202 -36.57749 -34.28760 -33.94181 -33.46929 -31.35505 -29.44973 -29.00623 -26.59233 -24.27433 -22.20700 -21.21687 -20.39373 -19.22351 -18.58233 -17.97289 -17.70353 -17.15206 -16.93727 -16.32667 -15.75879 -15.39638 -15.25829 -14.83785 -14.74224 -14.27228 -14.22329 -13.86711 -13.71567 -13.60186 -13.59431 -13.19290 -12.82983 -12.69922 -12.21606 -11.80296 -11.76273 -11.71000 -11.19095 -11.12600 -10.85146 -10.72950 -10.05565 -8.81985 -8.51368 -6.22286 -0.07264 0.40775 0.95508 1.24388 1.37373 1.40477 1.53939 1.62199 1.68332 1.72735 1.90428 2.21440 2.57101 2.77667 3.10203 3.32141 3.54267 3.78767 3.89109 4.01273 4.15083 4.29042 4.58287 4.71126 4.80367 5.04695 5.13740 5.39877 5.99358 6.15256 6.31248 6.41681 6.78489 6.83691 7.09000 7.56093 8.64627 Molecular weight = 281.07amu Principal moments of inertia in cm(-1) A = 0.027395 B = 0.004409 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.836119 B = 6349.481049 C = 6618.159793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.299 3.701 3 N -0.556 5.556 4 C 0.189 3.811 5 S 0.066 5.934 6 C -0.137 4.137 7 C 0.489 3.511 8 O -0.575 6.575 9 N -0.460 5.460 10 C -0.345 4.345 11 H 0.050 0.950 12 C 0.018 3.982 13 N -0.901 5.901 14 Si 0.926 3.074 15 H -0.225 1.225 16 H -0.285 1.285 17 H -0.231 1.231 18 C 0.175 3.825 19 C 0.219 3.781 20 N -0.463 5.463 21 N -0.340 5.340 22 N -0.468 5.468 23 H 0.458 0.542 24 H 0.111 0.889 25 H 0.118 0.882 26 H 0.102 0.898 27 H 0.148 0.852 28 H 0.117 0.883 29 H 0.284 0.716 30 H 0.123 0.877 31 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.921 -12.017 5.188 25.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.020 3.980 3 N -0.288 5.288 4 C -0.202 4.202 5 S 0.292 5.708 6 C -0.289 4.289 7 C 0.277 3.723 8 O -0.456 6.456 9 N -0.183 5.183 10 C -0.473 4.473 11 H 0.068 0.932 12 C -0.186 4.186 13 N -0.536 5.536 14 Si 0.746 3.254 15 H -0.149 1.149 16 H -0.212 1.212 17 H -0.154 1.154 18 C 0.049 3.951 19 C -0.100 4.100 20 N -0.142 5.142 21 N -0.175 5.175 22 N -0.189 5.189 23 H 0.308 0.692 24 H 0.129 0.871 25 H 0.137 0.863 26 H 0.121 0.879 27 H 0.166 0.834 28 H 0.136 0.864 29 H 0.094 0.906 30 H 0.140 0.860 31 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -21.304 -10.849 3.625 24.181 hybrid contribution 0.552 -1.658 0.531 1.826 sum -20.753 -12.507 4.156 24.584 Atomic orbital electron populations 1.20712 0.79308 1.06926 1.06310 1.25417 0.98417 0.81545 0.92633 1.70524 0.99520 1.31238 1.27560 1.26373 0.98271 0.93490 1.02035 1.86620 0.88858 1.02926 1.92399 1.23742 0.93423 1.02199 1.09518 1.19985 0.84341 0.87812 0.80130 1.90625 1.86670 1.15455 1.52862 1.43445 1.04735 1.03709 1.66396 1.18611 0.88259 1.09100 1.31287 0.93168 1.26239 0.93453 0.99680 0.99240 1.69869 0.99403 1.45392 1.38986 0.86161 0.81059 0.79648 0.78562 1.14934 1.21159 1.15353 1.19993 1.07918 0.81718 0.85495 1.29978 0.91802 0.92427 0.95792 1.81001 1.10569 1.10015 1.12589 1.78259 0.99456 1.09995 1.29802 1.47769 1.02944 1.11083 1.57112 0.69226 0.87090 0.86319 0.87945 0.83373 0.86443 0.90602 0.86019 0.81572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.51 71.24 0.75 0.32 16 2 C 0.30 5.43 8.23 138.24 1.14 6.57 16 3 N -0.56 -15.75 11.21 -188.58 -2.11 -17.86 16 4 C 0.19 5.85 8.28 180.47 1.49 7.35 16 5 S 0.07 2.29 21.30 -56.49 -1.20 1.09 16 6 C -0.14 -4.46 4.65 71.23 0.33 -4.12 16 7 C 0.49 21.15 7.58 87.66 0.66 21.82 16 8 O -0.57 -30.10 15.73 -3.08 -0.05 -30.15 16 9 N -0.46 -20.11 2.15 -645.40 -1.39 -21.50 16 10 C -0.35 -18.73 9.36 84.04 0.79 -17.94 16 11 H 0.05 3.27 7.91 -2.91 -0.02 3.24 16 12 C 0.02 0.92 5.26 84.93 0.45 1.37 16 13 N -0.90 -50.29 13.96 21.66 0.30 -49.99 16 14 Si 0.93 34.77 25.05 68.60 1.72 36.49 16 15 H -0.23 -6.94 6.69 99.48 0.67 -6.27 16 16 H -0.29 -11.10 7.11 99.48 0.71 -10.39 16 17 H -0.23 -7.82 7.11 99.48 0.71 -7.11 16 18 C 0.17 5.68 4.27 84.57 0.36 6.04 16 19 C 0.22 7.78 14.99 89.47 1.34 9.12 16 20 N -0.46 -18.10 18.52 19.98 0.37 -17.73 16 21 N -0.34 -9.22 12.36 -58.58 -0.72 -9.95 16 22 N -0.47 -8.25 7.43 -50.73 -0.38 -8.63 16 23 H 0.46 3.93 8.96 -213.11 -1.91 2.02 16 24 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 25 H 0.12 -0.10 8.14 -2.39 -0.02 -0.12 16 26 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 27 H 0.15 3.77 7.42 -2.39 -0.02 3.75 16 28 H 0.12 3.61 7.48 -2.39 -0.02 3.59 16 29 H 0.28 14.43 8.31 -92.71 -0.77 13.66 16 30 H 0.12 3.92 3.61 -2.39 -0.01 3.91 16 31 H 0.17 3.52 6.70 -2.38 -0.02 3.51 16 Total: -1.00 -80.07 296.57 3.10 -76.97 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -0.74 Total: 10.73 kcal Atomic # 6 Polarization: 23.21 SS G_CDS: 7.31 Total: 30.52 kcal Atomic # 7 Polarization: -121.72 SS G_CDS: -3.93 Total: -125.65 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: -0.05 Total: -30.15 kcal Atomic # 14 Polarization: 34.77 SS G_CDS: 1.72 Total: 36.49 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -1.20 Total: 1.09 kcal Total: -80.07 3.10 -76.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342726601.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.835 kcal (2) G-P(sol) polarization free energy of solvation -80.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds