Wall clock time and date at job start Wed Apr 15 2020 11:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00128 * 2 1 4 4 H 1.48503 * 109.47107 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47073 * 299.99982 * 3 2 1 6 6 H 1.48494 * 109.47295 * 60.00166 * 3 2 1 7 7 C 1.37877 * 120.00243 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00600 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99683 * 359.97438 * 7 2 1 10 10 O 1.42905 * 112.94330 * 309.66668 * 9 7 2 11 11 C 1.53938 * 113.74319 * 81.26065 * 9 7 2 12 12 N 1.47930 * 85.99946 * 138.00309 * 11 9 7 13 13 C 1.34775 * 134.50005 * 155.35590 * 12 11 9 14 14 O 1.21698 * 119.99594 * 180.02562 * 13 12 11 15 15 C 1.46674 * 120.00495 * 0.02562 * 13 12 11 16 16 C 1.37866 * 126.23420 * 179.69192 * 15 13 12 17 17 C 1.39841 * 107.08477 * 179.88290 * 16 15 13 18 18 C 1.35450 * 107.86339 * 0.37841 * 17 16 15 19 19 N 1.48027 * 125.56569 * 179.74464 * 18 17 16 20 20 O 1.21801 * 120.00094 * 180.02562 * 19 18 17 21 21 O 1.21800 * 119.99677 * 0.02562 * 19 18 17 22 22 N 1.35535 * 108.87366 * 359.76246 * 18 17 16 23 23 H 0.96999 * 125.67638 * 180.02562 * 22 18 17 24 24 C 1.47578 * 91.00545 * 335.36107 * 12 11 9 25 25 H 0.97001 * 119.99758 * 359.97438 * 1 2 3 26 26 H 0.96696 * 114.00036 * 50.33455 * 10 9 7 27 27 H 1.09003 * 113.77501 * 252.36190 * 11 9 7 28 28 H 1.09003 * 113.76864 * 23.76107 * 11 9 7 29 29 H 1.07996 * 126.45805 * 359.97438 * 16 15 13 30 30 H 1.08003 * 126.06910 * 180.16992 * 17 16 15 31 31 H 1.09007 * 113.76850 * 270.34096 * 24 12 11 32 32 H 1.08993 * 113.77344 * 138.93969 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 0.2454 -2.5618 1.0129 11 6 0.7551 -2.9285 -1.3932 12 7 1.1898 -4.2907 -1.0138 13 6 0.8397 -5.5348 -1.3962 14 8 1.3846 -6.5010 -0.8957 15 6 -0.1979 -5.7242 -2.4154 16 6 -0.6495 -6.9316 -2.9040 17 6 -1.6374 -6.6476 -3.8521 18 6 -1.7632 -5.3012 -3.9305 19 7 -2.6971 -4.5741 -4.8194 20 8 -2.7256 -3.3565 -4.8077 21 8 -3.4371 -5.1934 -5.5626 22 7 -0.8940 -4.7284 -3.0625 23 1 -0.7816 -3.7755 -2.9207 24 6 2.1607 -3.7402 -0.0484 25 1 -0.4850 0.8401 0.0004 26 1 -0.3467 -1.7974 1.0272 27 1 -0.3224 -2.8302 -1.5256 28 1 1.3270 -2.4979 -2.2152 29 1 -0.3061 -7.9122 -2.6090 30 1 -2.1981 -7.3729 -4.4231 31 1 3.1446 -3.5473 -0.4763 32 1 2.2047 -4.2892 0.8921 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356893281.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:55 Heat of formation + Delta-G solvation = 2.082586 kcal Electronic energy + Delta-G solvation = -21845.927147 eV Core-core repulsion = 18198.569623 eV Total energy + Delta-G solvation = -3647.357523 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.089 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.59577 -41.37640 -39.55686 -37.60101 -36.69443 -34.28241 -32.42490 -31.84683 -30.93293 -28.95585 -26.56728 -25.77132 -25.30454 -22.36863 -21.28448 -20.73431 -20.00947 -18.82676 -18.48173 -17.79050 -17.74664 -16.93786 -15.90332 -15.46674 -15.24617 -14.95322 -14.34776 -14.27074 -13.79986 -13.47311 -13.25780 -12.84696 -12.73216 -12.27157 -11.79582 -11.75226 -11.44588 -11.36302 -11.28219 -11.20150 -10.66394 -10.52857 -10.19829 -9.72204 -9.58486 -9.13006 -8.96812 -8.75916 -8.24692 -6.57938 -4.69542 -0.10734 0.89675 1.31273 2.16081 2.64058 2.99192 3.03929 3.14875 3.17417 3.27434 4.04930 4.33861 4.53725 4.65684 4.67900 5.21539 5.26119 5.47787 5.53218 5.71620 5.86474 5.92306 5.99774 6.07541 6.17922 6.24631 6.32832 6.71951 6.80628 7.45099 7.52111 7.57793 7.92696 8.19366 8.35487 9.02485 9.18275 10.49249 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.018058 B = 0.005370 C = 0.004350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.194039 B = 5212.772367 C = 6434.643787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.074 3.926 3 Si 0.910 3.090 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.542 4.542 8 H 0.075 0.925 9 C 0.246 3.754 10 O -0.571 6.571 11 C 0.060 3.940 12 N -0.627 5.627 13 C 0.593 3.407 14 O -0.533 6.533 15 C 0.058 3.942 16 C -0.128 4.128 17 C -0.091 4.091 18 C 0.060 3.940 19 N 0.058 4.942 20 O -0.170 6.170 21 O -0.140 6.140 22 N -0.506 5.506 23 H 0.436 0.564 24 C 0.117 3.883 25 H 0.275 0.725 26 H 0.394 0.606 27 H 0.065 0.935 28 H 0.093 0.907 29 H 0.174 0.826 30 H 0.173 0.827 31 H 0.094 0.906 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.599 -7.213 -6.144 9.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.130 4.130 3 Si 0.737 3.263 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.580 4.580 8 H 0.093 0.907 9 C 0.204 3.796 10 O -0.383 6.383 11 C -0.063 4.063 12 N -0.360 5.360 13 C 0.381 3.619 14 O -0.411 6.411 15 C -0.063 4.063 16 C -0.154 4.154 17 C -0.120 4.120 18 C -0.137 4.137 19 N 0.575 4.425 20 O -0.381 6.381 21 O -0.356 6.356 22 N -0.111 5.111 23 H 0.281 0.719 24 C -0.004 4.004 25 H 0.086 0.914 26 H 0.249 0.751 27 H 0.084 0.916 28 H 0.111 0.889 29 H 0.192 0.808 30 H 0.190 0.810 31 H 0.112 0.888 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.787 -8.429 -5.356 10.018 hybrid contribution -0.266 2.203 -0.510 2.277 sum -1.053 -6.226 -5.865 8.618 Atomic orbital electron populations 1.69376 1.06243 1.28527 1.49448 1.25092 0.95066 1.00118 0.92709 0.86236 0.80058 0.81993 0.78048 1.19345 1.20547 1.20478 1.21493 0.94083 0.89565 1.52821 0.90665 1.19769 0.85600 0.91583 0.82662 1.86077 1.47095 1.50019 1.55074 1.24720 0.99360 0.77565 1.04654 1.50335 1.40119 1.04204 1.41391 1.16506 0.81661 0.82836 0.80899 1.90843 1.55169 1.39193 1.55871 1.21306 0.98281 0.87752 0.98941 1.21447 0.97999 0.97783 0.98157 1.20858 0.99800 0.90998 1.00305 1.20865 1.00466 0.90725 1.01649 1.42593 0.99556 1.00878 0.99479 1.94628 1.74662 0.95002 1.73819 1.94557 1.36280 1.69600 1.35160 1.42312 1.28158 1.11353 1.29239 0.71944 1.23584 0.93206 0.92344 0.91277 0.91421 0.75085 0.91646 0.88895 0.80830 0.80983 0.88780 0.90281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.34 11.20 55.43 0.62 -20.72 16 2 C 0.07 1.72 5.39 -17.82 -0.10 1.62 16 3 Si 0.91 18.45 29.54 -169.99 -5.02 13.43 16 4 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.54 -12.52 8.61 -34.44 -0.30 -12.82 16 8 H 0.08 1.70 7.81 -52.49 -0.41 1.29 16 9 C 0.25 5.34 1.40 -90.85 -0.13 5.22 16 10 O -0.57 -13.54 13.48 -35.23 -0.48 -14.02 16 11 C 0.06 1.13 6.79 -2.78 -0.02 1.11 16 12 N -0.63 -11.80 3.62 -179.56 -0.65 -12.45 16 13 C 0.59 10.86 8.02 -12.86 -0.10 10.76 16 14 O -0.53 -10.87 17.61 5.19 0.09 -10.78 16 15 C 0.06 0.89 7.01 -81.98 -0.57 0.32 16 16 C -0.13 -1.61 10.65 -39.12 -0.42 -2.03 16 17 C -0.09 -1.06 10.46 -39.98 -0.42 -1.48 16 18 C 0.06 0.85 8.05 -144.05 -1.16 -0.32 16 19 N 0.06 0.87 4.45 33.00 0.15 1.02 16 20 O -0.17 -2.81 19.24 -29.46 -0.57 -3.38 16 21 O -0.14 -2.06 19.00 -29.46 -0.56 -2.62 16 22 N -0.51 -7.48 5.86 -6.49 -0.04 -7.52 16 23 H 0.44 6.50 5.77 -40.82 -0.24 6.26 16 24 C 0.12 2.27 8.23 -2.97 -0.02 2.24 16 25 H 0.28 6.29 8.31 -40.82 -0.34 5.95 16 26 H 0.39 9.51 6.60 45.56 0.30 9.81 16 27 H 0.07 1.23 6.51 -51.93 -0.34 0.89 16 28 H 0.09 1.67 8.09 -51.93 -0.42 1.25 16 29 H 0.17 1.83 8.06 -52.49 -0.42 1.40 16 30 H 0.17 1.47 8.06 -52.48 -0.42 1.05 16 31 H 0.09 1.64 8.09 -51.92 -0.42 1.22 16 32 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 LS Contribution 295.39 15.07 4.45 4.45 Total: -1.00 -26.18 295.39 -7.16 -33.34 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -1.93 Total: 14.60 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -3.24 Total: 4.63 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.08 Total: -39.66 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: -1.51 Total: -30.80 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.02 Total: 13.43 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -26.18 -7.16 -33.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356893281.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.427 kcal (2) G-P(sol) polarization free energy of solvation -26.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds