Wall clock time and date at job start Wed Apr 15 2020 11:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00128 * 2 1 4 4 H 1.48503 * 109.47107 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47073 * 299.99982 * 3 2 1 6 6 H 1.48494 * 109.47295 * 60.00166 * 3 2 1 7 7 C 1.37877 * 120.00243 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00600 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99683 * 359.97438 * 7 2 1 10 10 O 1.42905 * 112.94330 * 309.66668 * 9 7 2 11 11 C 1.53938 * 113.74319 * 81.26065 * 9 7 2 12 12 N 1.47930 * 85.99946 * 138.00309 * 11 9 7 13 13 C 1.34775 * 134.50005 * 155.35590 * 12 11 9 14 14 O 1.21698 * 119.99594 * 180.02562 * 13 12 11 15 15 C 1.46674 * 120.00495 * 0.02562 * 13 12 11 16 16 C 1.37866 * 126.23420 * 179.69192 * 15 13 12 17 17 C 1.39841 * 107.08477 * 179.88290 * 16 15 13 18 18 C 1.35450 * 107.86339 * 0.37841 * 17 16 15 19 19 N 1.48027 * 125.56569 * 179.74464 * 18 17 16 20 20 O 1.21801 * 120.00094 * 180.02562 * 19 18 17 21 21 O 1.21800 * 119.99677 * 0.02562 * 19 18 17 22 22 N 1.35535 * 108.87366 * 359.76246 * 18 17 16 23 23 H 0.96999 * 125.67638 * 180.02562 * 22 18 17 24 24 C 1.47578 * 91.00545 * 335.36107 * 12 11 9 25 25 H 0.97001 * 119.99758 * 359.97438 * 1 2 3 26 26 H 0.96696 * 114.00036 * 50.33455 * 10 9 7 27 27 H 1.09003 * 113.77501 * 252.36190 * 11 9 7 28 28 H 1.09003 * 113.76864 * 23.76107 * 11 9 7 29 29 H 1.07996 * 126.45805 * 359.97438 * 16 15 13 30 30 H 1.08003 * 126.06910 * 180.16992 * 17 16 15 31 31 H 1.09007 * 113.76850 * 270.34096 * 24 12 11 32 32 H 1.08993 * 113.77344 * 138.93969 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 0.2454 -2.5618 1.0129 11 6 0.7551 -2.9285 -1.3932 12 7 1.1898 -4.2907 -1.0138 13 6 0.8397 -5.5348 -1.3962 14 8 1.3846 -6.5010 -0.8957 15 6 -0.1979 -5.7242 -2.4154 16 6 -0.6495 -6.9316 -2.9040 17 6 -1.6374 -6.6476 -3.8521 18 6 -1.7632 -5.3012 -3.9305 19 7 -2.6971 -4.5741 -4.8194 20 8 -2.7256 -3.3565 -4.8077 21 8 -3.4371 -5.1934 -5.5626 22 7 -0.8940 -4.7284 -3.0625 23 1 -0.7816 -3.7755 -2.9207 24 6 2.1607 -3.7402 -0.0484 25 1 -0.4850 0.8401 0.0004 26 1 -0.3467 -1.7974 1.0272 27 1 -0.3224 -2.8302 -1.5256 28 1 1.3270 -2.4979 -2.2152 29 1 -0.3061 -7.9122 -2.6090 30 1 -2.1981 -7.3729 -4.4231 31 1 3.1446 -3.5473 -0.4763 32 1 2.2047 -4.2892 0.8921 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356893281.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:54 Heat of formation + Delta-G solvation = -14.710195 kcal Electronic energy + Delta-G solvation = -21846.655336 eV Core-core repulsion = 18198.569623 eV Total energy + Delta-G solvation = -3648.085713 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.089 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.73225 -42.55277 -41.04982 -39.14326 -37.87145 -35.99630 -34.22900 -32.93309 -32.13753 -30.46569 -27.98688 -27.32504 -26.77509 -23.64559 -22.39101 -21.90378 -21.48866 -20.16432 -19.69838 -19.44600 -18.91631 -18.41411 -17.47596 -16.94422 -16.84785 -16.21401 -15.84451 -15.64424 -15.04322 -14.73571 -14.53704 -14.40403 -14.10291 -13.84556 -13.51685 -12.99688 -12.94949 -12.84839 -12.61104 -12.48681 -12.31788 -12.28252 -11.73874 -11.23733 -10.74348 -10.73644 -10.46678 -10.27746 -9.78756 -8.34427 -6.51351 -1.28114 -0.22321 0.12876 1.12212 1.42149 1.44346 1.49512 1.57488 1.62054 1.93000 2.35963 2.86726 3.03201 3.46436 3.61004 3.67590 3.91983 4.18600 4.24599 4.40333 4.48948 4.61391 4.63791 4.67029 4.82834 4.91522 5.10289 5.24612 5.55208 5.66151 5.82273 6.32638 6.45034 6.55993 6.73653 7.22213 7.33294 8.71760 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.018058 B = 0.005370 C = 0.004350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.194039 B = 5212.772367 C = 6434.643787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.035 3.965 3 Si 0.966 3.034 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.283 1.283 7 C -0.555 4.555 8 H 0.077 0.923 9 C 0.223 3.777 10 O -0.584 6.584 11 C 0.075 3.925 12 N -0.630 5.630 13 C 0.593 3.407 14 O -0.557 6.557 15 C 0.033 3.967 16 C -0.107 4.107 17 C -0.066 4.066 18 C 0.051 3.949 19 N 0.058 4.942 20 O -0.223 6.223 21 O -0.108 6.108 22 N -0.516 5.516 23 H 0.431 0.569 24 C 0.119 3.881 25 H 0.276 0.724 26 H 0.388 0.612 27 H 0.064 0.936 28 H 0.103 0.897 29 H 0.199 0.801 30 H 0.212 0.788 31 H 0.114 0.886 32 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.659 -8.558 -7.317 11.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.166 4.166 3 Si 0.792 3.208 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.209 1.209 7 C -0.593 4.593 8 H 0.095 0.905 9 C 0.182 3.818 10 O -0.396 6.396 11 C -0.047 4.047 12 N -0.363 5.363 13 C 0.383 3.617 14 O -0.437 6.437 15 C -0.086 4.086 16 C -0.133 4.133 17 C -0.094 4.094 18 C -0.146 4.146 19 N 0.573 4.427 20 O -0.421 6.421 21 O -0.334 6.334 22 N -0.119 5.119 23 H 0.275 0.725 24 C -0.002 4.002 25 H 0.086 0.914 26 H 0.243 0.757 27 H 0.082 0.918 28 H 0.121 0.879 29 H 0.216 0.784 30 H 0.229 0.771 31 H 0.132 0.868 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.810 -9.677 -6.502 11.687 hybrid contribution -0.298 2.463 -0.174 2.487 sum -1.109 -7.214 -6.676 9.892 Atomic orbital electron populations 1.69444 1.07121 1.29013 1.50017 1.25723 0.95711 1.02612 0.92585 0.85363 0.79128 0.78739 0.77567 1.18915 1.20539 1.20894 1.21742 0.94363 0.90400 1.52785 0.90467 1.20061 0.85895 0.92260 0.83596 1.86062 1.47513 1.49755 1.56271 1.24473 0.99372 0.77585 1.03309 1.50283 1.40105 1.04496 1.41401 1.16814 0.81830 0.82042 0.81017 1.90821 1.56271 1.39599 1.57034 1.21043 0.98932 0.89011 0.99642 1.21837 0.96886 0.97685 0.96883 1.21364 0.98652 0.90272 0.99153 1.21135 1.00431 0.91365 1.01665 1.42721 0.99653 1.00756 0.99549 1.94653 1.76249 0.95702 1.75455 1.94522 1.35400 1.69293 1.34216 1.42254 1.28729 1.11117 1.29821 0.72540 1.23576 0.93864 0.91248 0.91561 0.91422 0.75726 0.91822 0.87926 0.78407 0.77075 0.86845 0.90950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -44.02 11.20 21.45 0.24 -43.78 16 2 C 0.03 1.62 5.39 84.66 0.46 2.08 16 3 Si 0.97 37.69 29.54 68.60 2.03 39.72 16 4 H -0.27 -10.06 7.11 99.48 0.71 -9.36 16 5 H -0.28 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.28 -11.14 7.11 99.48 0.71 -10.44 16 7 C -0.55 -25.65 8.61 25.60 0.22 -25.43 16 8 H 0.08 3.45 7.81 -2.91 -0.02 3.43 16 9 C 0.22 9.78 1.40 -10.88 -0.02 9.76 16 10 O -0.58 -28.31 13.48 -148.98 -2.01 -30.32 16 11 C 0.08 2.87 6.79 86.42 0.59 3.45 16 12 N -0.63 -23.54 3.62 -844.04 -3.05 -26.59 16 13 C 0.59 21.28 8.02 86.45 0.69 21.98 16 14 O -0.56 -22.27 17.61 -4.34 -0.08 -22.34 16 15 C 0.03 0.97 7.01 40.35 0.28 1.25 16 16 C -0.11 -2.33 10.65 22.57 0.24 -2.09 16 17 C -0.07 -1.27 10.46 22.01 0.23 -1.04 16 18 C 0.05 1.32 8.05 127.91 1.03 2.35 16 19 N 0.06 1.67 4.45 -49.51 -0.22 1.44 16 20 O -0.22 -7.39 19.24 18.88 0.36 -7.03 16 21 O -0.11 -2.87 19.00 18.89 0.36 -2.51 16 22 N -0.52 -14.72 5.86 -174.46 -1.02 -15.74 16 23 H 0.43 12.91 5.77 -92.71 -0.54 12.38 16 24 C 0.12 4.59 8.23 86.49 0.71 5.30 16 25 H 0.28 12.70 8.31 -92.71 -0.77 11.93 16 26 H 0.39 19.29 6.60 -74.06 -0.49 18.80 16 27 H 0.06 2.44 6.51 -2.39 -0.02 2.42 16 28 H 0.10 3.67 8.09 -2.39 -0.02 3.65 16 29 H 0.20 3.34 8.06 -2.91 -0.02 3.31 16 30 H 0.21 2.38 8.06 -2.91 -0.02 2.36 16 31 H 0.11 3.88 8.09 -2.38 -0.02 3.86 16 32 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 Total: -1.00 -55.71 295.39 1.23 -54.48 By element: Atomic # 1 Polarization: 34.87 SS G_CDS: 0.18 Total: 35.06 kcal Atomic # 6 Polarization: 13.18 SS G_CDS: 4.44 Total: 17.62 kcal Atomic # 7 Polarization: -80.61 SS G_CDS: -4.06 Total: -84.67 kcal Atomic # 8 Polarization: -60.84 SS G_CDS: -1.36 Total: -62.20 kcal Atomic # 14 Polarization: 37.69 SS G_CDS: 2.03 Total: 39.72 kcal Total: -55.71 1.23 -54.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356893281.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.767 kcal (2) G-P(sol) polarization free energy of solvation -55.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds