Wall clock time and date at job start Wed Apr 15 2020 11:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47410 * 48.91588 * 3 2 1 5 5 N 1.46501 * 109.47040 * 179.97438 * 4 3 2 6 6 C 1.30346 * 119.99637 * 121.48957 * 5 4 3 7 7 N 1.37289 * 119.61245 * 6.98159 * 6 5 4 8 8 H 0.96991 * 119.33297 * 0.25314 * 7 6 5 9 9 C 1.37280 * 121.33136 * 179.97438 * 7 6 5 10 10 C 1.34443 * 120.50185 * 0.02650 * 9 7 6 11 11 Cl 1.73593 * 120.39357 * 179.97438 * 10 9 7 12 12 C 1.46795 * 119.21517 * 359.97272 * 10 9 7 13 13 N 1.30891 * 120.62492 * 179.97438 * 12 10 9 14 14 C 1.46504 * 119.99481 * 359.31565 * 13 12 10 15 15 C 1.50705 * 109.46919 * 180.70075 * 14 13 12 16 16 H 1.07997 * 120.00078 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00026 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99683 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00187 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47103 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47238 * 119.99815 * 19 17 15 22 22 H 1.48501 * 109.47285 * 239.99901 * 19 17 15 23 23 N 1.37630 * 119.60952 * 186.96250 * 6 5 4 24 24 H 0.97006 * 120.28881 * 0.03901 * 23 6 5 25 25 H 1.09001 * 109.47141 * 288.91109 * 3 2 1 26 26 H 1.08998 * 109.46976 * 168.91876 * 3 2 1 27 27 H 1.09005 * 109.46893 * 59.99708 * 4 3 2 28 28 H 1.09001 * 109.46835 * 299.99867 * 4 3 2 29 29 H 1.07992 * 119.74658 * 179.97438 * 9 7 6 30 30 H 1.09000 * 109.47119 * 300.69614 * 14 13 12 31 31 H 1.09001 * 109.47218 * 60.70149 * 14 13 12 32 32 H 0.97003 * 119.99574 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1185 -0.9471 -1.0873 5 7 4.5835 -0.9459 -1.0876 6 6 5.2361 -2.0584 -0.8994 7 7 4.5502 -3.2464 -0.8455 8 1 3.5861 -3.2438 -0.9520 9 6 5.2018 -4.4387 -0.6494 10 6 6.5380 -4.4702 -0.5040 11 17 7.3591 -5.9793 -0.2556 12 6 7.2944 -3.2132 -0.5578 13 7 8.5959 -3.2118 -0.4191 14 6 9.3098 -4.4710 -0.1928 15 6 10.7843 -4.1940 -0.0509 16 1 11.1528 -3.1813 -0.1217 17 6 11.6630 -5.2334 0.1694 18 7 11.2141 -6.4666 0.2561 19 14 13.4906 -4.8901 0.3461 20 1 13.7356 -3.4317 0.2104 21 1 13.9536 -5.3483 1.6806 22 1 14.2355 -5.6172 -0.7130 23 7 6.6047 -2.0283 -0.7575 24 1 7.0822 -1.1848 -0.7965 25 1 2.9715 -0.3322 0.9722 26 1 2.9708 1.0093 -0.1975 27 1 2.7549 -0.6141 -2.0595 28 1 2.7556 -1.9557 -0.8896 29 1 4.6368 -5.3582 -0.6109 30 1 8.9389 -4.9402 0.7184 31 1 9.1453 -5.1389 -1.0384 32 1 11.8323 -7.1979 0.4114 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362661635.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:57 Heat of formation + Delta-G solvation = 95.704901 kcal Electronic energy + Delta-G solvation = -18450.246999 eV Core-core repulsion = 15279.951160 eV Total energy + Delta-G solvation = -3170.295839 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.074 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.64438 -38.42679 -37.77668 -37.01497 -35.94422 -35.35236 -34.08216 -32.25572 -30.07557 -28.97484 -25.76542 -24.87277 -23.98914 -21.50371 -20.58959 -19.17990 -18.56183 -18.18920 -17.58165 -16.94782 -16.57199 -16.33166 -16.09496 -15.74060 -15.04572 -14.82017 -14.53029 -14.44970 -14.10485 -13.89926 -13.48134 -13.21099 -12.93334 -12.80441 -12.72475 -12.30114 -12.28138 -12.09249 -11.89734 -11.41194 -11.25616 -10.56618 -10.44396 -9.44959 -9.05163 -8.60009 -8.10822 -6.18971 0.28539 0.98881 1.06124 1.43032 1.43312 1.57065 1.73872 1.84579 1.87621 2.07750 2.41307 2.46850 3.05102 3.20058 3.41409 3.94134 4.12087 4.12447 4.27758 4.35326 4.55464 4.80437 4.98063 5.10938 5.21278 5.36295 5.57204 5.68976 5.75992 6.02799 6.19936 6.41837 6.62118 6.89695 7.15692 7.33200 7.53414 8.97696 Molecular weight = 281.07amu Principal moments of inertia in cm(-1) A = 0.035666 B = 0.003453 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.875449 B = 8106.246275 C = 8726.953903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C 0.241 3.759 3 C -0.013 4.013 4 C 0.075 3.925 5 N -0.636 5.636 6 C 0.612 3.388 7 N -0.653 5.653 8 H 0.444 0.556 9 C 0.187 3.813 10 C -0.221 4.221 11 Cl -0.032 7.032 12 C 0.384 3.616 13 N -0.583 5.583 14 C 0.204 3.796 15 C -0.530 4.530 16 H 0.047 0.953 17 C 0.008 3.992 18 N -0.922 5.922 19 Si 0.964 3.036 20 H -0.271 1.271 21 H -0.276 1.276 22 H -0.277 1.277 23 N -0.611 5.611 24 H 0.437 0.563 25 H 0.122 0.878 26 H 0.134 0.866 27 H 0.093 0.907 28 H 0.056 0.944 29 H 0.212 0.788 30 H 0.022 0.978 31 H 0.021 0.979 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.174 6.019 -1.927 19.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.177 5.177 2 C -0.077 4.077 3 C -0.053 4.053 4 C -0.057 4.057 5 N -0.374 5.374 6 C 0.248 3.752 7 N -0.290 5.290 8 H 0.290 0.710 9 C 0.059 3.941 10 C -0.261 4.261 11 Cl -0.004 7.004 12 C 0.106 3.894 13 N -0.304 5.304 14 C 0.077 3.923 15 C -0.569 4.569 16 H 0.066 0.934 17 C -0.191 4.191 18 N -0.562 5.562 19 Si 0.789 3.211 20 H -0.196 1.196 21 H -0.202 1.202 22 H -0.203 1.203 23 N -0.250 5.250 24 H 0.279 0.721 25 H 0.140 0.860 26 H 0.151 0.849 27 H 0.111 0.889 28 H 0.074 0.926 29 H 0.229 0.771 30 H 0.039 0.961 31 H 0.039 0.961 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.781 7.048 -1.985 20.158 hybrid contribution 0.730 -1.323 0.178 1.522 sum -18.051 5.725 -1.808 19.023 Atomic orbital electron populations 1.81298 1.14914 1.10813 1.10644 1.29532 0.95378 0.91369 0.91380 1.19331 0.78750 1.04919 1.02345 1.21602 0.86163 0.98342 0.99559 1.72586 1.09124 1.19856 1.35822 1.18872 0.83679 0.83415 0.89211 1.42612 1.12016 1.03012 1.71320 0.70983 1.21940 0.90884 0.91429 0.89839 1.21773 0.93489 0.88064 1.22766 1.98447 1.77526 1.29089 1.95306 1.19819 0.89789 0.84242 0.95562 1.71937 1.05343 1.33816 1.19315 1.19940 0.92083 0.84411 0.95877 1.21562 0.93350 0.93422 1.48575 0.93450 1.25738 1.03407 0.94745 0.95190 1.70069 1.36103 0.99413 1.50632 0.85423 0.79620 0.78219 0.77835 1.19586 1.20200 1.20255 1.41063 1.02835 1.08178 1.72941 0.72058 0.86012 0.84866 0.88911 0.92609 0.77150 0.96081 0.96126 0.92845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -10.26 18.54 20.00 0.37 -9.88 16 2 C 0.24 3.14 15.43 89.44 1.38 4.52 16 3 C -0.01 -0.09 6.03 28.79 0.17 0.08 16 4 C 0.08 0.67 6.24 86.38 0.54 1.21 16 5 N -0.64 -10.23 10.62 -349.39 -3.71 -13.94 16 6 C 0.61 11.82 8.48 260.56 2.21 14.03 16 7 N -0.65 -8.83 5.24 -196.07 -1.03 -9.86 16 8 H 0.44 2.58 6.09 -92.72 -0.56 2.01 16 9 C 0.19 3.27 10.98 82.97 0.91 4.19 16 10 C -0.22 -6.70 6.42 23.64 0.15 -6.55 16 11 Cl -0.03 -1.19 22.96 -2.72 -0.06 -1.25 16 12 C 0.38 13.79 7.86 135.68 1.07 14.86 16 13 N -0.58 -27.47 10.64 -342.84 -3.65 -31.12 16 14 C 0.20 11.09 3.93 85.63 0.34 11.43 16 15 C -0.53 -31.72 9.39 25.60 0.24 -31.48 16 16 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 17 C 0.01 0.44 5.46 84.65 0.46 0.90 16 18 N -0.92 -54.68 13.29 21.45 0.28 -54.39 16 19 Si 0.96 45.43 29.54 68.60 2.03 47.46 16 20 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 23 N -0.61 -16.47 5.53 -189.40 -1.05 -17.51 16 24 H 0.44 11.46 8.94 -92.70 -0.83 10.63 16 25 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 28 H 0.06 0.28 5.38 -2.39 -0.01 0.27 16 29 H 0.21 1.85 8.06 -2.91 -0.02 1.82 16 30 H 0.02 1.21 6.28 -2.39 -0.01 1.20 16 31 H 0.02 1.19 6.26 -2.39 -0.01 1.18 16 32 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -77.57 299.44 0.47 -77.10 By element: Atomic # 1 Polarization: 0.40 SS G_CDS: -0.19 Total: 0.21 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: 7.47 Total: 13.19 kcal Atomic # 7 Polarization: -127.93 SS G_CDS: -8.78 Total: -136.70 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -0.06 Total: -1.25 kcal Total: -77.57 0.47 -77.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362661635.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.804 kcal (2) G-P(sol) polarization free energy of solvation -77.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds