Wall clock time and date at job start Wed Apr 15 2020 11:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99984 * 2 1 4 4 H 1.48504 * 109.47146 * 269.99932 * 3 2 1 5 5 H 1.48494 * 109.47159 * 29.99897 * 3 2 1 6 6 H 1.48496 * 109.47075 * 150.00036 * 3 2 1 7 7 C 1.37874 * 119.99983 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00308 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99980 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.47111 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99864 * 180.02562 * 10 9 7 12 12 O 1.21285 * 120.00075 * 0.02562 * 11 10 9 13 13 C 1.50694 * 120.00032 * 180.02562 * 11 10 9 14 14 N 1.46498 * 109.47581 * 180.02562 * 13 11 10 15 15 C 1.35760 * 119.62549 * 270.02328 * 14 13 11 16 16 C 1.35358 * 120.70309 * 179.72864 * 15 14 13 17 17 C 1.40194 * 119.94528 * 0.50470 * 16 15 14 18 18 C 1.36404 * 119.26746 * 359.47918 * 17 16 15 19 19 N 1.48000 * 120.34909 * 180.25595 * 18 17 16 20 20 O 1.21803 * 119.99909 * 0.02562 * 19 18 17 21 21 O 1.21795 * 119.99884 * 180.02562 * 19 18 17 22 22 C 1.34669 * 119.62528 * 89.99599 * 14 13 11 23 23 O 1.22056 * 119.98376 * 0.02562 * 22 14 13 24 24 H 0.96998 * 119.99923 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47088 * 60.00751 * 9 7 2 26 26 H 1.08996 * 109.47698 * 300.00519 * 9 7 2 27 27 H 0.96995 * 119.99635 * 0.02562 * 10 9 7 28 28 H 1.08999 * 109.47237 * 59.99616 * 13 11 10 29 29 H 1.09008 * 109.47284 * 300.00400 * 13 11 10 30 30 H 1.08000 * 119.65013 * 0.02562 * 15 14 13 31 31 H 1.07991 * 120.02568 * 180.28576 * 16 15 14 32 32 H 1.08002 * 120.36883 * 179.75933 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7538 -4.8834 -0.0011 12 8 0.5614 -5.1050 -0.0020 13 6 2.7330 -6.0288 -0.0005 14 7 2.0006 -7.2975 -0.0018 15 6 1.6633 -7.8790 1.1777 16 6 0.9819 -9.0483 1.2019 17 6 0.6267 -9.6763 -0.0002 18 6 0.9659 -9.0903 -1.1843 19 7 0.5979 -9.7295 -2.4674 20 8 -0.0115 -10.7841 -2.4697 21 8 0.9045 -9.2010 -3.5210 22 6 1.6690 -7.8735 -1.1731 23 8 1.9792 -7.3385 -2.2254 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6246 -2.5571 0.8896 27 1 3.1567 -3.4354 -0.0002 28 1 3.3590 -5.9712 0.8899 29 1 3.3604 -5.9709 -0.8900 30 1 1.9375 -7.4011 2.1066 31 1 0.7152 -9.4989 2.1464 32 1 0.0863 -10.6113 0.0112 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750553943.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:04 Heat of formation + Delta-G solvation = -33.367067 kcal Electronic energy + Delta-G solvation = -21307.267485 eV Core-core repulsion = 17658.372749 eV Total energy + Delta-G solvation = -3648.894736 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.089 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.44478 -41.40978 -38.96221 -37.58204 -36.21373 -35.20865 -34.42695 -32.54718 -31.09327 -29.33547 -27.01658 -26.90015 -23.89306 -23.31549 -22.53363 -20.31665 -19.48536 -18.88426 -17.92322 -17.60811 -17.43593 -17.33067 -16.55117 -16.12126 -15.30871 -15.18687 -15.02021 -14.91454 -14.17159 -13.47493 -13.20483 -13.08839 -12.75114 -12.47656 -12.12696 -11.80963 -11.40697 -11.22270 -11.16139 -11.10823 -10.98372 -10.92855 -10.45339 -10.37117 -9.58268 -9.50960 -8.89878 -8.71245 -8.17135 -6.28372 -4.36848 -0.44645 1.14408 1.26828 1.28486 2.11822 2.85691 2.98142 3.17374 3.23518 3.25319 3.68495 3.85125 3.96379 4.24377 4.25635 4.32126 4.57249 4.87817 4.94554 5.08263 5.11238 5.20582 5.32437 5.73763 6.28389 6.45372 7.06763 7.09402 7.32188 7.43070 7.48248 7.81075 7.83103 8.29191 8.53127 8.77435 9.30057 10.81686 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.032672 B = 0.003485 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.792065 B = 8031.894837 C = 8367.301740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.548 4.548 8 H 0.065 0.935 9 C 0.250 3.750 10 N -0.699 5.699 11 C 0.485 3.515 12 O -0.544 6.544 13 C 0.063 3.937 14 N -0.469 5.469 15 C 0.215 3.785 16 C -0.255 4.255 17 C 0.088 3.912 18 C -0.191 4.191 19 N 0.053 4.947 20 O -0.193 6.193 21 O -0.129 6.129 22 C 0.540 3.460 23 O -0.486 6.486 24 H 0.268 0.732 25 H 0.030 0.970 26 H 0.030 0.970 27 H 0.394 0.606 28 H 0.129 0.871 29 H 0.134 0.866 30 H 0.182 0.818 31 H 0.170 0.830 32 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.977 -17.599 7.665 20.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.586 4.586 8 H 0.083 0.917 9 C 0.130 3.870 10 N -0.348 5.348 11 C 0.267 3.733 12 O -0.422 6.422 13 C -0.061 4.061 14 N -0.176 5.176 15 C 0.083 3.917 16 C -0.279 4.279 17 C 0.065 3.935 18 C -0.281 4.281 19 N 0.569 4.431 20 O -0.398 6.398 21 O -0.352 6.352 22 C 0.336 3.664 23 O -0.361 6.361 24 H 0.077 0.923 25 H 0.048 0.952 26 H 0.047 0.953 27 H 0.227 0.773 28 H 0.147 0.853 29 H 0.152 0.848 30 H 0.200 0.800 31 H 0.188 0.812 32 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 6.318 -16.926 7.529 19.572 hybrid contribution 0.639 0.903 -0.173 1.120 sum 6.957 -16.023 7.356 18.954 Atomic orbital electron populations 1.69968 1.06172 1.27564 1.48377 1.24958 0.94937 0.99578 0.94459 0.86375 0.79535 0.82404 0.78378 1.20325 1.20933 1.19694 1.21171 0.93300 0.90218 1.53932 0.91719 1.19210 0.88156 0.81623 0.98040 1.46418 1.11630 1.05545 1.71186 1.20320 0.89364 0.84671 0.78940 1.90743 1.16255 1.84513 1.50723 1.22170 0.95049 0.80917 1.08004 1.45208 1.45736 1.20328 1.06337 1.22615 0.87469 0.91458 0.90184 1.20656 1.09720 0.98524 0.98959 1.21604 0.85058 0.97019 0.89859 1.21522 1.19592 1.01301 0.85636 1.42786 0.98408 0.99830 1.02029 1.94490 1.40813 1.10539 1.93920 1.94645 1.56497 1.65354 1.18708 1.15860 0.81673 0.84909 0.83923 1.91147 1.52922 1.63649 1.28392 0.92268 0.95228 0.95254 0.77262 0.85321 0.84783 0.80043 0.81211 0.81878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.35 13.29 55.43 0.74 -24.62 16 2 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.91 20.15 29.54 -169.99 -5.02 15.13 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 7 C -0.55 -14.14 9.28 -34.44 -0.32 -14.46 16 8 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 9 C 0.25 6.25 5.43 -5.19 -0.03 6.22 16 10 N -0.70 -13.07 5.55 -61.47 -0.34 -13.41 16 11 C 0.48 8.43 7.89 -10.99 -0.09 8.34 16 12 O -0.54 -12.08 16.43 5.55 0.09 -11.99 16 13 C 0.06 0.69 5.81 -5.20 -0.03 0.66 16 14 N -0.47 -5.44 2.07 -121.06 -0.25 -5.69 16 15 C 0.22 1.52 10.28 -16.84 -0.17 1.34 16 16 C -0.26 -1.53 10.01 -39.87 -0.40 -1.93 16 17 C 0.09 0.79 9.60 -39.51 -0.38 0.41 16 18 C -0.19 -2.71 6.88 -79.75 -0.55 -3.26 16 19 N 0.05 0.90 4.45 34.06 0.15 1.06 16 20 O -0.19 -3.06 18.47 -29.46 -0.54 -3.60 16 21 O -0.13 -2.52 17.44 -36.39 -0.63 -3.16 16 22 C 0.54 8.48 7.40 -15.44 -0.11 8.36 16 23 O -0.49 -9.61 14.81 -16.91 -0.25 -9.86 16 24 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 25 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.39 5.96 8.32 -40.82 -0.34 5.62 16 28 H 0.13 0.70 8.01 -51.93 -0.42 0.28 16 29 H 0.13 1.45 7.39 -51.92 -0.38 1.07 16 30 H 0.18 0.49 8.04 -52.49 -0.42 0.07 16 31 H 0.17 0.35 8.06 -52.49 -0.42 -0.08 16 32 H 0.16 1.05 7.62 -52.49 -0.40 0.65 16 LS Contribution 301.05 15.07 4.54 4.54 Total: -1.00 -38.42 301.05 -6.47 -44.89 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: -2.76 Total: -0.64 kcal Atomic # 6 Polarization: 9.52 SS G_CDS: -2.18 Total: 7.34 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: 0.30 Total: -42.66 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -1.34 Total: -28.61 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -38.42 -6.47 -44.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750553943.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.523 kcal (2) G-P(sol) polarization free energy of solvation -38.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds