Wall clock time and date at job start Wed Apr 15 2020 11:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99984 * 2 1 4 4 H 1.48504 * 109.47146 * 269.99932 * 3 2 1 5 5 H 1.48494 * 109.47159 * 29.99897 * 3 2 1 6 6 H 1.48496 * 109.47075 * 150.00036 * 3 2 1 7 7 C 1.37874 * 119.99983 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00308 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99980 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.47111 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99864 * 180.02562 * 10 9 7 12 12 O 1.21285 * 120.00075 * 0.02562 * 11 10 9 13 13 C 1.50694 * 120.00032 * 180.02562 * 11 10 9 14 14 N 1.46498 * 109.47581 * 180.02562 * 13 11 10 15 15 C 1.35760 * 119.62549 * 270.02328 * 14 13 11 16 16 C 1.35358 * 120.70309 * 179.72864 * 15 14 13 17 17 C 1.40194 * 119.94528 * 0.50470 * 16 15 14 18 18 C 1.36404 * 119.26746 * 359.47918 * 17 16 15 19 19 N 1.48000 * 120.34909 * 180.25595 * 18 17 16 20 20 O 1.21803 * 119.99909 * 0.02562 * 19 18 17 21 21 O 1.21795 * 119.99884 * 180.02562 * 19 18 17 22 22 C 1.34669 * 119.62528 * 89.99599 * 14 13 11 23 23 O 1.22056 * 119.98376 * 0.02562 * 22 14 13 24 24 H 0.96998 * 119.99923 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47088 * 60.00751 * 9 7 2 26 26 H 1.08996 * 109.47698 * 300.00519 * 9 7 2 27 27 H 0.96995 * 119.99635 * 0.02562 * 10 9 7 28 28 H 1.08999 * 109.47237 * 59.99616 * 13 11 10 29 29 H 1.09008 * 109.47284 * 300.00400 * 13 11 10 30 30 H 1.08000 * 119.65013 * 0.02562 * 15 14 13 31 31 H 1.07991 * 120.02568 * 180.28576 * 16 15 14 32 32 H 1.08002 * 120.36883 * 179.75933 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7538 -4.8834 -0.0011 12 8 0.5614 -5.1050 -0.0020 13 6 2.7330 -6.0288 -0.0005 14 7 2.0006 -7.2975 -0.0018 15 6 1.6633 -7.8790 1.1777 16 6 0.9819 -9.0483 1.2019 17 6 0.6267 -9.6763 -0.0002 18 6 0.9659 -9.0903 -1.1843 19 7 0.5979 -9.7295 -2.4674 20 8 -0.0115 -10.7841 -2.4697 21 8 0.9045 -9.2010 -3.5210 22 6 1.6690 -7.8735 -1.1731 23 8 1.9792 -7.3385 -2.2254 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6246 -2.5571 0.8896 27 1 3.1567 -3.4354 -0.0002 28 1 3.3590 -5.9712 0.8899 29 1 3.3604 -5.9709 -0.8900 30 1 1.9375 -7.4011 2.1066 31 1 0.7152 -9.4989 2.1464 32 1 0.0863 -10.6113 0.0112 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750553943.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:03 Heat of formation + Delta-G solvation = -63.162329 kcal Electronic energy + Delta-G solvation = -21308.559504 eV Core-core repulsion = 17658.372749 eV Total energy + Delta-G solvation = -3650.186755 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.089 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.49040 -42.51433 -40.43398 -38.62895 -37.42547 -36.39795 -35.95785 -34.45468 -31.98368 -30.63878 -28.66580 -27.91723 -25.26011 -24.26072 -24.06957 -21.79182 -20.60521 -19.98684 -19.36104 -18.67954 -18.56234 -18.23286 -17.92004 -17.54749 -16.73753 -16.59286 -16.45732 -15.87549 -15.64037 -14.72875 -14.36584 -14.09811 -14.07684 -13.81351 -13.41910 -13.23938 -12.97072 -12.74406 -12.67996 -12.34894 -12.26703 -12.24442 -12.11754 -11.54600 -11.50780 -10.99253 -10.85124 -9.98226 -9.62222 -8.32763 -6.49690 -1.33245 -0.00802 0.28837 0.51696 1.18783 1.42701 1.44636 1.48885 1.55725 2.02950 2.30240 2.49495 3.01196 3.03232 3.44898 3.55683 3.59424 3.72904 3.85413 4.11200 4.26861 4.56917 4.78085 5.03361 5.12015 5.16701 5.23649 5.37942 5.50743 5.58295 5.79010 6.40891 6.57147 6.60082 6.70564 7.17433 7.32025 8.79307 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.032672 B = 0.003485 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.792065 B = 8031.894837 C = 8367.301740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.984 3.016 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.250 1.250 7 C -0.556 4.556 8 H 0.089 0.911 9 C 0.267 3.733 10 N -0.695 5.695 11 C 0.482 3.518 12 O -0.598 6.598 13 C 0.078 3.922 14 N -0.473 5.473 15 C 0.222 3.778 16 C -0.231 4.231 17 C 0.112 3.888 18 C -0.240 4.240 19 N 0.058 4.942 20 O -0.158 6.158 21 O -0.236 6.236 22 C 0.525 3.475 23 O -0.551 6.551 24 H 0.269 0.731 25 H -0.022 1.022 26 H -0.002 1.002 27 H 0.415 0.585 28 H 0.203 0.797 29 H 0.135 0.865 30 H 0.241 0.759 31 H 0.229 0.771 32 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.062 -18.554 11.877 23.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.807 3.193 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.173 1.173 7 C -0.594 4.594 8 H 0.107 0.893 9 C 0.144 3.856 10 N -0.345 5.345 11 C 0.267 3.733 12 O -0.479 6.479 13 C -0.046 4.046 14 N -0.179 5.179 15 C 0.091 3.909 16 C -0.253 4.253 17 C 0.088 3.912 18 C -0.331 4.331 19 N 0.565 4.435 20 O -0.376 6.376 21 O -0.433 6.433 22 C 0.324 3.676 23 O -0.432 6.432 24 H 0.077 0.923 25 H -0.004 1.004 26 H 0.016 0.984 27 H 0.252 0.748 28 H 0.220 0.780 29 H 0.153 0.847 30 H 0.257 0.743 31 H 0.245 0.755 32 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 8.534 -17.800 11.647 22.920 hybrid contribution -0.123 1.013 -1.155 1.542 sum 8.411 -16.787 10.492 21.509 Atomic orbital electron populations 1.70135 1.08358 1.28621 1.49949 1.26065 0.95724 1.03985 0.93834 0.85165 0.78724 0.76991 0.78408 1.20192 1.21032 1.17318 1.21623 0.94502 0.90345 1.52890 0.89317 1.18572 0.88641 0.84223 0.94179 1.46063 1.11693 1.05019 1.71736 1.21428 0.89822 0.85477 0.76524 1.90718 1.19243 1.85383 1.52588 1.22277 0.92990 0.77719 1.11578 1.45262 1.45671 1.20282 1.06682 1.23850 0.85432 0.91494 0.90136 1.21469 1.06876 0.97336 0.99601 1.22226 0.82820 0.97460 0.88715 1.21643 1.23609 1.02530 0.85270 1.43185 0.97717 0.99647 1.02965 1.94394 1.38784 1.10204 1.94204 1.94659 1.60969 1.67037 1.20680 1.16303 0.81440 0.85403 0.84424 1.91099 1.55767 1.65419 1.30917 0.92266 1.00437 0.98389 0.74841 0.77981 0.84745 0.74324 0.75486 0.78898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.16 13.29 21.45 0.28 -54.87 16 2 C 0.00 0.20 5.46 84.65 0.46 0.66 16 3 Si 0.98 40.94 29.54 68.60 2.03 42.97 16 4 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 5 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 6 H -0.25 -9.42 7.11 99.48 0.71 -8.72 16 7 C -0.56 -28.73 9.28 25.60 0.24 -28.49 16 8 H 0.09 4.05 7.60 -2.91 -0.02 4.03 16 9 C 0.27 13.85 5.43 85.63 0.46 14.31 16 10 N -0.70 -25.73 5.55 -466.78 -2.59 -28.32 16 11 C 0.48 16.42 7.89 87.66 0.69 17.11 16 12 O -0.60 -27.08 16.43 -3.04 -0.05 -27.13 16 13 C 0.08 1.47 5.81 85.63 0.50 1.97 16 14 N -0.47 -9.69 2.07 -655.06 -1.36 -11.05 16 15 C 0.22 1.80 10.28 83.42 0.86 2.66 16 16 C -0.23 -1.27 10.01 22.08 0.22 -1.05 16 17 C 0.11 1.59 9.60 22.32 0.21 1.80 16 18 C -0.24 -6.79 6.88 36.51 0.25 -6.54 16 19 N 0.06 2.10 4.45 -46.16 -0.21 1.89 16 20 O -0.16 -5.03 18.47 18.88 0.35 -4.68 16 21 O -0.24 -10.37 17.44 25.52 0.45 -9.93 16 22 C 0.52 16.79 7.40 84.82 0.63 17.42 16 23 O -0.55 -23.67 14.81 15.32 0.23 -23.45 16 24 H 0.27 14.90 8.31 -92.71 -0.77 14.12 16 25 H -0.02 -1.37 8.14 -2.39 -0.02 -1.39 16 26 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 27 H 0.41 11.74 8.32 -92.71 -0.77 10.97 16 28 H 0.20 0.83 8.01 -2.39 -0.02 0.81 16 29 H 0.13 2.70 7.39 -2.38 -0.02 2.68 16 30 H 0.24 -0.81 8.04 -2.91 -0.02 -0.83 16 31 H 0.23 -1.20 8.06 -2.92 -0.02 -1.22 16 32 H 0.19 1.56 7.62 -2.91 -0.02 1.54 16 Total: -1.00 -98.68 301.05 4.07 -94.61 By element: Atomic # 1 Polarization: -0.31 SS G_CDS: 0.41 Total: 0.10 kcal Atomic # 6 Polarization: 15.33 SS G_CDS: 4.53 Total: 19.85 kcal Atomic # 7 Polarization: -88.48 SS G_CDS: -3.87 Total: -92.35 kcal Atomic # 8 Polarization: -66.16 SS G_CDS: 0.97 Total: -65.19 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Total: -98.68 4.07 -94.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750553943.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.448 kcal (2) G-P(sol) polarization free energy of solvation -98.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds