Wall clock time and date at job start Wed Apr 15 2020 11:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.34777 * 120.00015 * 84.99707 * 12 2 1 14 14 O 1.21577 * 120.00160 * 0.02562 * 13 12 2 15 15 C 1.47625 * 119.99626 * 179.97438 * 13 12 2 16 16 C 1.39553 * 120.50055 * 0.02562 * 15 13 12 17 17 N 1.31638 * 120.62633 * 180.02562 * 16 15 13 18 18 C 1.32438 * 121.79808 * 359.97438 * 17 16 15 19 19 O 1.35505 * 119.52558 * 179.97438 * 18 17 16 20 20 C 1.39130 * 120.94940 * 359.97438 * 18 17 16 21 21 N 1.48021 * 120.36287 * 180.02562 * 20 18 17 22 22 O 1.21805 * 119.99296 * 179.97438 * 21 20 18 23 23 O 1.21800 * 120.00377 * 359.97438 * 21 20 18 24 24 C 1.37992 * 119.26303 * 359.75527 * 20 18 17 25 25 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 26 26 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 0.97005 * 119.99880 * 265.00058 * 12 2 1 30 30 H 1.08001 * 119.69155 * 0.02562 * 16 15 13 31 31 H 0.96697 * 113.99869 * 89.99728 * 19 18 17 32 32 H 1.07998 * 120.82121 * 180.27827 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3571 14 8 1.8583 1.1617 -2.4115 15 6 2.6396 -0.7138 -3.5624 16 6 2.9746 -2.0675 -3.5115 17 7 3.4146 -2.6903 -4.5846 18 6 3.5561 -2.0668 -5.7444 19 8 4.0136 -2.7527 -6.8198 20 6 3.2419 -0.7177 -5.8746 21 7 3.4046 -0.0339 -7.1773 22 8 3.1270 1.1473 -7.2838 23 8 3.8159 -0.6524 -8.1427 24 6 2.7717 -0.0257 -4.7773 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 0.7089 1.1611 3.4845 29 1 2.2490 -1.6317 -1.1527 30 1 2.8719 -2.6096 -2.5830 31 1 3.3170 -3.1658 -7.3482 32 1 2.5159 1.0209 -4.8511 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187088705.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:50 Heat of formation + Delta-G solvation = -61.725659 kcal Electronic energy + Delta-G solvation = -21258.272309 eV Core-core repulsion = 17608.147853 eV Total energy + Delta-G solvation = -3650.124457 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.089 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.54889 -42.09072 -40.54257 -38.59985 -37.65843 -36.87715 -34.67554 -34.43376 -32.80780 -30.63430 -28.04614 -27.33969 -25.90799 -24.74265 -23.21082 -21.77030 -20.85759 -20.23425 -20.03522 -19.10214 -18.85088 -18.33499 -17.75732 -17.23753 -16.97419 -16.29331 -16.08280 -15.51509 -14.97909 -14.81548 -14.54645 -14.28773 -13.72767 -13.37187 -13.01774 -12.88915 -12.79389 -12.74926 -12.72758 -12.37917 -12.26536 -12.16583 -11.93617 -11.52067 -11.12694 -10.99710 -10.81574 -10.59352 -9.90624 -8.17276 -6.34708 -1.61044 -0.95091 -0.06651 0.02615 1.37306 1.48910 1.49641 1.57276 1.83507 2.04825 2.22525 2.44776 2.74670 3.04574 3.14530 3.20189 3.39262 3.62307 4.03003 4.35402 4.50807 4.76198 4.91881 5.03607 5.07410 5.37555 5.52277 5.65585 5.84676 5.87946 6.08021 6.25304 6.35033 6.68404 6.74796 7.21302 7.40065 8.88673 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.033812 B = 0.003685 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.902765 B = 7597.052421 C = 8175.051133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.270 3.730 3 H 0.006 0.994 4 C -0.548 4.548 5 H 0.081 0.919 6 C 0.017 3.983 7 N -0.917 5.917 8 Si 0.970 3.030 9 H -0.291 1.291 10 H -0.262 1.262 11 H -0.271 1.271 12 N -0.687 5.687 13 C 0.553 3.447 14 O -0.582 6.582 15 C -0.189 4.189 16 C 0.231 3.769 17 N -0.489 5.489 18 C 0.424 3.576 19 O -0.457 6.457 20 C -0.135 4.135 21 N 0.038 4.962 22 O -0.202 6.202 23 O -0.114 6.114 24 C 0.059 3.941 25 H 0.014 0.986 26 H 0.045 0.955 27 H 0.067 0.933 28 H 0.265 0.735 29 H 0.409 0.591 30 H 0.220 0.780 31 H 0.441 0.559 32 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.248 -10.541 -14.173 17.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.167 3.833 3 H 0.023 0.977 4 C -0.586 4.586 5 H 0.099 0.901 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.795 3.205 9 H -0.217 1.217 10 H -0.187 1.187 11 H -0.197 1.197 12 N -0.336 5.336 13 C 0.338 3.662 14 O -0.463 6.463 15 C -0.195 4.195 16 C 0.073 3.927 17 N -0.209 5.209 18 C 0.241 3.759 19 O -0.271 6.271 20 C -0.222 4.222 21 N 0.556 4.444 22 O -0.405 6.405 23 O -0.342 6.342 24 C 0.033 3.967 25 H 0.033 0.967 26 H 0.065 0.935 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.246 0.754 30 H 0.236 0.764 31 H 0.308 0.692 32 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 3.585 -10.559 -13.223 17.297 hybrid contribution -0.365 0.725 0.337 0.879 sum 3.220 -9.834 -12.886 16.527 Atomic orbital electron populations 1.21929 0.97891 0.99919 0.99834 1.18468 0.91374 0.92237 0.81215 0.97655 1.21511 1.32813 1.13836 0.90423 0.90122 1.25749 0.94824 0.95497 1.02266 1.70038 1.36864 1.23856 1.24709 0.85430 0.78618 0.78809 0.77685 1.21696 1.18673 1.19657 1.46168 1.63940 1.14367 1.09098 1.18025 0.78417 0.86315 0.83437 1.90795 1.52809 1.17316 1.85396 1.20938 1.08212 0.96307 0.94076 1.23841 0.82678 0.89180 0.96978 1.67920 1.16465 1.37945 0.98530 1.19124 0.83421 0.84706 0.88605 1.84711 1.36854 1.70203 1.35287 1.22341 1.18078 0.95518 0.86302 1.43325 0.97954 1.00852 1.02230 1.94622 1.55638 0.99185 1.91024 1.94528 1.44492 1.66470 1.28690 1.21545 0.84695 1.02164 0.88331 0.96652 0.93542 0.91460 0.92569 0.75356 0.76409 0.69182 0.81185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.31 9.26 71.98 0.67 -5.64 16 2 C 0.27 12.59 2.56 44.24 0.11 12.70 16 3 H 0.01 0.31 7.58 -2.39 -0.02 0.29 16 4 C -0.55 -26.22 8.73 25.60 0.22 -26.00 16 5 H 0.08 3.48 7.74 -2.91 -0.02 3.46 16 6 C 0.02 0.86 5.30 84.66 0.45 1.31 16 7 N -0.92 -49.77 11.32 21.45 0.24 -49.53 16 8 Si 0.97 39.24 29.54 68.60 2.03 41.27 16 9 H -0.29 -11.98 7.11 99.48 0.71 -11.27 16 10 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 11 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 12 N -0.69 -23.83 5.02 -449.20 -2.26 -26.09 16 13 C 0.55 18.98 7.74 86.72 0.67 19.65 16 14 O -0.58 -25.63 16.08 -3.96 -0.06 -25.69 16 15 C -0.19 -4.61 5.89 -19.99 -0.12 -4.73 16 16 C 0.23 4.09 10.71 85.04 0.91 5.00 16 17 N -0.49 -8.90 10.37 -307.80 -3.19 -12.09 16 18 C 0.42 7.96 7.73 84.82 0.66 8.62 16 19 O -0.46 -6.79 11.57 -66.95 -0.77 -7.56 16 20 C -0.13 -3.03 6.88 36.53 0.25 -2.77 16 21 N 0.04 0.96 4.45 -46.09 -0.21 0.76 16 22 O -0.20 -5.86 18.51 18.88 0.35 -5.52 16 23 O -0.11 -2.74 17.26 25.60 0.44 -2.30 16 24 C 0.06 1.46 9.20 22.70 0.21 1.67 16 25 H 0.01 0.66 8.14 -2.38 -0.02 0.64 16 26 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.07 3.48 6.07 -2.39 -0.01 3.46 16 28 H 0.27 13.78 8.31 -92.71 -0.77 13.01 16 29 H 0.41 10.60 6.59 -92.70 -0.61 9.99 16 30 H 0.22 2.45 6.41 -2.91 -0.02 2.43 16 31 H 0.44 1.99 9.06 -74.06 -0.67 1.32 16 32 H 0.17 4.56 7.36 -2.91 -0.02 4.54 16 Total: -1.00 -67.01 294.84 0.53 -66.47 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -0.07 Total: 10.47 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: 4.03 Total: 9.81 kcal Atomic # 7 Polarization: -81.54 SS G_CDS: -5.41 Total: -86.95 kcal Atomic # 8 Polarization: -41.02 SS G_CDS: -0.05 Total: -41.07 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 2.03 Total: 41.27 kcal Total: -67.01 0.53 -66.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187088705.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.747 kcal (2) G-P(sol) polarization free energy of solvation -67.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds