Wall clock time and date at job start Wed Apr 15 2020 11:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46496 * 119.99712 * 2 1 4 4 C 1.50702 * 109.47119 * 269.99685 * 3 2 1 5 5 H 1.08003 * 119.99595 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00353 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00204 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 120.00166 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47017 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47323 * 119.99799 * 8 6 4 11 11 H 1.48502 * 109.47005 * 240.00096 * 8 6 4 12 12 C 1.34777 * 120.00105 * 179.97438 * 2 1 3 13 13 O 1.21576 * 119.99791 * 184.81716 * 12 2 1 14 14 C 1.47618 * 119.99933 * 4.81247 * 12 2 1 15 15 C 1.39557 * 120.49434 * 141.67199 * 14 12 2 16 16 N 1.31645 * 120.62512 * 180.02562 * 15 14 12 17 17 C 1.32434 * 121.79470 * 0.02562 * 16 15 14 18 18 O 1.35499 * 119.52219 * 179.97438 * 17 16 15 19 19 C 1.39118 * 120.95288 * 359.97438 * 17 16 15 20 20 N 1.48024 * 120.36833 * 179.97438 * 19 17 16 21 21 O 1.21802 * 119.99972 * 180.02562 * 20 19 17 22 22 O 1.21795 * 119.99901 * 0.02562 * 20 19 17 23 23 C 1.37996 * 119.26592 * 0.02562 * 19 17 16 24 24 H 1.08999 * 109.47139 * 264.93137 * 1 2 3 25 25 H 1.09000 * 109.47210 * 24.93374 * 1 2 3 26 26 H 1.09005 * 109.46784 * 144.93211 * 1 2 3 27 27 H 1.08999 * 109.47524 * 29.99462 * 3 2 1 28 28 H 1.09002 * 109.47508 * 149.99827 * 3 2 1 29 29 H 0.96997 * 120.00168 * 180.02562 * 7 6 4 30 30 H 1.07999 * 119.69163 * 359.74226 * 15 14 12 31 31 H 0.96699 * 114.00362 * 269.99816 * 18 17 16 32 32 H 1.08005 * 120.82196 * 179.97438 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0974 1.0960 -2.2417 6 6 3.1268 2.8774 -1.6729 7 7 3.5550 3.6172 -0.6733 8 14 3.4388 3.4162 -3.4341 9 1 2.8618 2.4156 -4.3674 10 1 2.8017 4.7370 -3.6679 11 1 4.9015 3.5239 -3.6670 12 6 2.1389 -1.1672 0.0005 13 8 3.3515 -1.1689 0.0889 14 6 1.4047 -2.4434 -0.1062 15 6 1.9222 -3.4972 -0.8607 16 7 1.2694 -4.6362 -0.9580 17 6 0.1077 -4.8286 -0.3520 18 8 -0.5250 -6.0196 -0.4839 19 6 -0.4724 -3.8257 0.4180 20 7 -1.7717 -4.0545 1.0892 21 8 -2.2738 -3.1716 1.7615 22 8 -2.3387 -5.1258 0.9694 23 6 0.1763 -2.6147 0.5483 24 1 -0.3633 -0.0908 1.0236 25 1 -0.3634 0.9319 -0.4332 26 1 -0.3633 -0.8412 -0.5905 27 1 1.6083 2.0284 0.5137 28 1 3.1499 1.1385 0.5139 29 1 4.0317 4.4430 -0.8506 30 1 2.8650 -3.3756 -1.3734 31 1 -1.1313 -6.0617 -1.2360 32 1 -0.2514 -1.8186 1.1396 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274995976.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:00 Heat of formation + Delta-G solvation = -22.074387 kcal Electronic energy + Delta-G solvation = -21668.879746 eV Core-core repulsion = 18020.474698 eV Total energy + Delta-G solvation = -3648.405048 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.089 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.54964 -41.09160 -39.27984 -37.61037 -36.63458 -35.38854 -33.74874 -32.75271 -31.50466 -28.11582 -27.02027 -26.51442 -24.55642 -23.91438 -22.66510 -20.34747 -19.61045 -19.06313 -18.57901 -17.85056 -17.30957 -16.75284 -16.62829 -16.60804 -15.51797 -15.08407 -14.64478 -14.28170 -14.04940 -13.50300 -13.12723 -12.66656 -12.48471 -12.37358 -12.08226 -11.74849 -11.65494 -11.40456 -11.31534 -11.07890 -10.88529 -10.72768 -10.43483 -10.33631 -9.87950 -9.73219 -9.45603 -8.59804 -8.02059 -6.21031 -4.27478 -0.60629 0.10057 0.95528 1.03466 2.48627 2.76023 3.13626 3.19618 3.28150 3.31297 3.42523 3.78665 3.96677 4.09098 4.30239 4.46570 4.64800 4.81918 5.14355 5.17976 5.27278 5.53295 5.55046 5.91670 6.05704 6.68995 6.73519 7.00412 7.13829 7.24230 7.41757 7.73142 7.96717 8.01101 8.48441 8.77266 9.38603 10.87168 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.027923 B = 0.004257 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.499018 B = 6575.855298 C = 6981.810418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.585 5.585 3 C 0.243 3.757 4 C -0.535 4.535 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.891 5.891 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.281 1.281 12 C 0.552 3.448 13 O -0.519 6.519 14 C -0.174 4.174 15 C 0.224 3.776 16 N -0.490 5.490 17 C 0.398 3.602 18 O -0.456 6.456 19 C -0.128 4.128 20 N 0.038 4.962 21 O -0.163 6.163 22 O -0.136 6.136 23 C 0.021 3.979 24 H 0.056 0.944 25 H 0.087 0.913 26 H 0.054 0.946 27 H 0.040 0.960 28 H 0.050 0.950 29 H 0.265 0.735 30 H 0.194 0.806 31 H 0.416 0.584 32 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.605 -13.257 -0.020 16.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.316 5.316 3 C 0.125 3.875 4 C -0.573 4.573 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.728 3.272 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.207 1.207 12 C 0.336 3.664 13 O -0.397 6.397 14 C -0.180 4.180 15 C 0.067 3.933 16 N -0.209 5.209 17 C 0.216 3.784 18 O -0.265 6.265 19 C -0.215 4.215 20 N 0.558 4.442 21 O -0.375 6.375 22 O -0.356 6.356 23 C -0.005 4.005 24 H 0.074 0.926 25 H 0.106 0.894 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.211 0.789 31 H 0.279 0.721 32 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -7.639 -13.766 -0.239 15.746 hybrid contribution -0.837 1.031 -0.715 1.508 sum -8.477 -12.735 -0.954 15.328 Atomic orbital electron populations 1.22065 0.81323 1.03602 1.00323 1.48170 1.06333 1.07652 1.69455 1.19487 0.92825 0.77163 0.98064 1.21402 1.37282 1.06751 0.91914 0.92280 1.24931 0.95085 0.96234 0.97642 1.69929 1.37842 1.14307 1.30812 0.86412 0.78213 0.78434 0.84185 1.19800 1.20819 1.20720 1.17533 0.87089 0.82462 0.79302 1.90835 1.12689 1.86400 1.49729 1.21492 0.95532 0.99309 1.01679 1.23351 0.97106 0.84164 0.88723 1.67801 1.07001 1.23831 1.22296 1.19068 0.87987 0.83428 0.87908 1.84758 1.60044 1.28161 1.53562 1.22380 0.90360 0.98566 1.10236 1.43203 1.01337 1.00423 0.99238 1.94578 1.67322 1.38203 1.37429 1.94565 1.62355 1.12783 1.65941 1.22156 0.91266 0.94677 0.92380 0.92604 0.89400 0.92768 0.94254 0.93168 0.92507 0.78910 0.72126 0.80166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.98 8.87 59.85 0.53 1.51 16 2 N -0.59 -11.04 2.86 -184.16 -0.53 -11.56 16 3 C 0.24 5.81 5.17 -5.19 -0.03 5.78 16 4 C -0.53 -14.04 9.39 -34.44 -0.32 -14.37 16 5 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 6 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 7 N -0.89 -25.06 13.29 55.43 0.74 -24.32 16 8 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 9 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 C 0.55 10.13 7.37 -12.43 -0.09 10.04 16 13 O -0.52 -11.58 16.46 5.30 0.09 -11.49 16 14 C -0.17 -2.38 5.27 -104.83 -0.55 -2.94 16 15 C 0.22 2.76 10.79 -17.14 -0.18 2.57 16 16 N -0.49 -5.87 10.37 -12.97 -0.13 -6.01 16 17 C 0.40 4.53 7.73 -16.97 -0.13 4.40 16 18 O -0.46 -4.38 11.57 -40.27 -0.47 -4.85 16 19 C -0.13 -1.52 6.88 -79.71 -0.55 -2.07 16 20 N 0.04 0.48 4.45 34.08 0.15 0.64 16 21 O -0.16 -2.19 18.51 -29.46 -0.55 -2.73 16 22 O -0.14 -1.75 17.26 -36.48 -0.63 -2.38 16 23 C 0.02 0.25 7.17 -38.92 -0.28 -0.02 16 24 H 0.06 0.63 6.86 -51.93 -0.36 0.28 16 25 H 0.09 1.25 8.03 -51.93 -0.42 0.83 16 26 H 0.05 0.64 5.83 -51.93 -0.30 0.34 16 27 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 28 H 0.05 1.36 7.36 -51.93 -0.38 0.97 16 29 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.19 2.14 8.05 -52.49 -0.42 1.72 16 31 H 0.42 1.94 9.06 45.56 0.41 2.35 16 32 H 0.18 1.97 4.92 -52.48 -0.26 1.71 16 LS Contribution 294.04 15.07 4.43 4.43 Total: -1.00 -32.06 294.04 -5.31 -37.37 By element: Atomic # 1 Polarization: 0.45 SS G_CDS: -1.69 Total: -1.24 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: -1.70 Total: 6.52 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.23 Total: -41.26 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -1.55 Total: -21.46 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.06 -5.31 -37.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274995976.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.300 kcal (2) G-P(sol) polarization free energy of solvation -32.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds