Wall clock time and date at job start Wed Apr 15 2020 11:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46496 * 119.99712 * 2 1 4 4 C 1.50702 * 109.47119 * 269.99685 * 3 2 1 5 5 H 1.08003 * 119.99595 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00353 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00204 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 120.00166 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47017 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47323 * 119.99799 * 8 6 4 11 11 H 1.48502 * 109.47005 * 240.00096 * 8 6 4 12 12 C 1.34777 * 120.00105 * 179.97438 * 2 1 3 13 13 O 1.21576 * 119.99791 * 184.81716 * 12 2 1 14 14 C 1.47618 * 119.99933 * 4.81247 * 12 2 1 15 15 C 1.39557 * 120.49434 * 141.67199 * 14 12 2 16 16 N 1.31645 * 120.62512 * 180.02562 * 15 14 12 17 17 C 1.32434 * 121.79470 * 0.02562 * 16 15 14 18 18 O 1.35499 * 119.52219 * 179.97438 * 17 16 15 19 19 C 1.39118 * 120.95288 * 359.97438 * 17 16 15 20 20 N 1.48024 * 120.36833 * 179.97438 * 19 17 16 21 21 O 1.21802 * 119.99972 * 180.02562 * 20 19 17 22 22 O 1.21795 * 119.99901 * 0.02562 * 20 19 17 23 23 C 1.37996 * 119.26592 * 0.02562 * 19 17 16 24 24 H 1.08999 * 109.47139 * 264.93137 * 1 2 3 25 25 H 1.09000 * 109.47210 * 24.93374 * 1 2 3 26 26 H 1.09005 * 109.46784 * 144.93211 * 1 2 3 27 27 H 1.08999 * 109.47524 * 29.99462 * 3 2 1 28 28 H 1.09002 * 109.47508 * 149.99827 * 3 2 1 29 29 H 0.96997 * 120.00168 * 180.02562 * 7 6 4 30 30 H 1.07999 * 119.69163 * 359.74226 * 15 14 12 31 31 H 0.96699 * 114.00362 * 269.99816 * 18 17 16 32 32 H 1.08005 * 120.82196 * 179.97438 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0974 1.0960 -2.2417 6 6 3.1268 2.8774 -1.6729 7 7 3.5550 3.6172 -0.6733 8 14 3.4388 3.4162 -3.4341 9 1 2.8618 2.4156 -4.3674 10 1 2.8017 4.7370 -3.6679 11 1 4.9015 3.5239 -3.6670 12 6 2.1389 -1.1672 0.0005 13 8 3.3515 -1.1689 0.0889 14 6 1.4047 -2.4434 -0.1062 15 6 1.9222 -3.4972 -0.8607 16 7 1.2694 -4.6362 -0.9580 17 6 0.1077 -4.8286 -0.3520 18 8 -0.5250 -6.0196 -0.4839 19 6 -0.4724 -3.8257 0.4180 20 7 -1.7717 -4.0545 1.0892 21 8 -2.2738 -3.1716 1.7615 22 8 -2.3387 -5.1258 0.9694 23 6 0.1763 -2.6147 0.5483 24 1 -0.3633 -0.0908 1.0236 25 1 -0.3634 0.9319 -0.4332 26 1 -0.3633 -0.8412 -0.5905 27 1 1.6083 2.0284 0.5137 28 1 3.1499 1.1385 0.5139 29 1 4.0317 4.4430 -0.8506 30 1 2.8650 -3.3756 -1.3734 31 1 -1.1313 -6.0617 -1.2360 32 1 -0.2514 -1.8186 1.1396 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274995976.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:00 Heat of formation + Delta-G solvation = -46.253693 kcal Electronic energy + Delta-G solvation = -21669.928240 eV Core-core repulsion = 18020.474698 eV Total energy + Delta-G solvation = -3649.453542 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.089 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.53066 -42.14096 -40.58617 -38.56791 -37.61384 -36.92279 -35.09668 -34.37433 -32.64238 -29.81390 -28.10474 -27.77799 -25.97139 -25.02880 -24.08399 -21.58802 -20.47608 -20.07452 -19.76951 -18.82592 -18.72547 -18.33762 -17.95238 -17.56158 -17.06589 -16.35552 -16.25064 -15.61004 -15.09572 -14.72303 -14.38088 -14.20351 -13.91988 -13.51559 -13.34065 -13.10067 -12.89076 -12.74714 -12.69148 -12.59496 -12.32236 -12.24526 -11.85288 -11.70617 -11.48313 -10.94019 -10.74570 -10.65110 -9.62430 -8.24699 -6.39218 -1.57035 -0.89561 -0.03549 0.05793 1.36710 1.39021 1.41953 1.51767 1.74473 1.96426 2.13975 2.38364 2.80816 2.88222 3.07102 3.10515 3.53373 3.54831 3.85136 4.12703 4.23717 4.49950 4.58459 4.79555 4.93514 5.08700 5.19286 5.43660 5.72838 5.90614 6.00187 6.26292 6.40452 6.45351 6.69123 7.04831 7.32524 8.83031 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.027923 B = 0.004257 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.499018 B = 6575.855298 C = 6981.810418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.593 5.593 3 C 0.256 3.744 4 C -0.545 4.545 5 H 0.058 0.942 6 C 0.012 3.988 7 N -0.926 5.926 8 Si 0.966 3.034 9 H -0.265 1.265 10 H -0.273 1.273 11 H -0.282 1.282 12 C 0.553 3.447 13 O -0.570 6.570 14 C -0.184 4.184 15 C 0.237 3.763 16 N -0.494 5.494 17 C 0.417 3.583 18 O -0.458 6.458 19 C -0.131 4.131 20 N 0.039 4.961 21 O -0.179 6.179 22 O -0.131 6.131 23 C 0.039 3.961 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.033 0.967 28 H 0.009 0.991 29 H 0.268 0.732 30 H 0.202 0.798 31 H 0.439 0.561 32 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.117 -14.660 -1.126 18.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.323 5.323 3 C 0.136 3.864 4 C -0.584 4.584 5 H 0.076 0.924 6 C -0.188 4.188 7 N -0.565 5.565 8 Si 0.791 3.209 9 H -0.189 1.189 10 H -0.198 1.198 11 H -0.208 1.208 12 C 0.339 3.661 13 O -0.450 6.450 14 C -0.191 4.191 15 C 0.079 3.921 16 N -0.213 5.213 17 C 0.234 3.766 18 O -0.271 6.271 19 C -0.219 4.219 20 N 0.559 4.441 21 O -0.388 6.388 22 O -0.353 6.353 23 C 0.013 3.987 24 H 0.103 0.897 25 H 0.102 0.898 26 H 0.097 0.903 27 H 0.051 0.949 28 H 0.027 0.973 29 H 0.077 0.923 30 H 0.219 0.781 31 H 0.306 0.694 32 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -9.230 -15.173 -1.347 17.811 hybrid contribution -0.431 1.323 -0.348 1.434 sum -9.661 -13.850 -1.694 16.972 Atomic orbital electron populations 1.22351 0.78113 1.04526 1.02689 1.48092 1.08305 1.06335 1.69518 1.18952 0.91580 0.79346 0.96540 1.21700 1.37047 1.06770 0.92842 0.92389 1.25799 0.94859 0.96413 1.01709 1.70042 1.38706 1.14829 1.32960 0.85388 0.77849 0.78378 0.79316 1.18947 1.19806 1.20840 1.18028 0.86700 0.83566 0.77780 1.90801 1.15055 1.87352 1.51834 1.20883 0.96393 0.97422 1.04373 1.23457 0.97094 0.83749 0.87772 1.67933 1.07318 1.23330 1.22757 1.19157 0.87521 0.83452 0.86421 1.84716 1.60477 1.26989 1.54957 1.22306 0.90192 0.98697 1.10722 1.43254 1.01448 1.00313 0.99125 1.94588 1.67739 1.38361 1.38128 1.94559 1.62408 1.12700 1.65658 1.22126 0.90190 0.95078 0.91279 0.89708 0.89818 0.90276 0.94904 0.97268 0.92331 0.78129 0.69355 0.79115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.70 8.87 127.77 1.13 2.83 16 2 N -0.59 -22.42 2.86 -854.83 -2.44 -24.87 16 3 C 0.26 12.66 5.17 85.63 0.44 13.10 16 4 C -0.55 -29.05 9.39 25.60 0.24 -28.81 16 5 H 0.06 3.03 7.81 -2.91 -0.02 3.01 16 6 C 0.01 0.64 5.46 84.65 0.46 1.10 16 7 N -0.93 -53.19 13.29 21.45 0.28 -52.90 16 8 Si 0.97 42.35 29.54 68.60 2.03 44.38 16 9 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 10 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 12 C 0.55 20.38 7.37 86.72 0.64 21.02 16 13 O -0.57 -26.27 16.46 -3.96 -0.07 -26.33 16 14 C -0.18 -4.81 5.27 -20.00 -0.11 -4.92 16 15 C 0.24 5.44 10.79 85.04 0.92 6.36 16 16 N -0.49 -10.57 10.37 -307.81 -3.19 -13.77 16 17 C 0.42 8.23 7.73 84.81 0.66 8.88 16 18 O -0.46 -7.25 11.57 -66.89 -0.77 -8.02 16 19 C -0.13 -2.76 6.88 36.53 0.25 -2.51 16 20 N 0.04 0.91 4.45 -46.09 -0.21 0.70 16 21 O -0.18 -4.42 18.51 18.88 0.35 -4.07 16 22 O -0.13 -2.99 17.26 25.60 0.44 -2.55 16 23 C 0.04 0.85 7.17 22.70 0.16 1.01 16 24 H 0.08 1.73 6.86 -2.39 -0.02 1.72 16 25 H 0.08 2.28 8.03 -2.39 -0.02 2.26 16 26 H 0.08 1.67 5.83 -2.38 -0.01 1.66 16 27 H 0.03 1.64 8.07 -2.39 -0.02 1.62 16 28 H 0.01 0.53 7.36 -2.39 -0.02 0.51 16 29 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 30 H 0.20 4.24 8.05 -2.91 -0.02 4.22 16 31 H 0.44 2.45 9.06 -74.06 -0.67 1.78 16 32 H 0.19 3.67 4.92 -2.91 -0.01 3.66 16 Total: -1.00 -69.90 294.04 1.76 -68.14 By element: Atomic # 1 Polarization: 0.68 SS G_CDS: 0.53 Total: 1.21 kcal Atomic # 6 Polarization: 13.28 SS G_CDS: 4.80 Total: 18.08 kcal Atomic # 7 Polarization: -85.28 SS G_CDS: -5.55 Total: -90.83 kcal Atomic # 8 Polarization: -40.93 SS G_CDS: -0.05 Total: -40.98 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -69.90 1.76 -68.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274995976.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.887 kcal (2) G-P(sol) polarization free energy of solvation -69.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds