Wall clock time and date at job start Wed Apr 15 2020 11:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34747 * 116.99863 * 2 1 4 4 O 1.21498 * 119.99890 * 0.02562 * 3 2 1 5 5 C 1.47477 * 120.00321 * 179.97438 * 3 2 1 6 6 C 1.39993 * 120.60271 * 5.32924 * 5 3 2 7 7 C 1.38362 * 118.35047 * 180.02562 * 6 5 3 8 8 N 1.48022 * 120.26022 * 179.97438 * 7 6 5 9 9 O 1.31697 * 119.99953 * 0.02562 * 8 7 6 10 10 O 1.31699 * 119.99686 * 179.97438 * 8 7 6 11 11 C 1.38465 * 119.48311 * 359.97438 * 7 6 5 12 12 N 1.31801 * 121.19983 * 359.73940 * 11 7 6 13 13 C 1.32362 * 121.80086 * 0.53645 * 12 11 7 14 14 N 1.38620 * 119.81320 * 179.74924 * 13 12 11 15 15 C 1.46494 * 120.00111 * 265.94706 * 14 13 12 16 16 C 1.32907 * 120.00026 * 85.94614 * 14 13 12 17 17 H 1.08006 * 120.00036 * 2.16798 * 16 14 13 18 18 C 1.46798 * 120.00185 * 182.43695 * 16 14 13 19 19 N 1.29320 * 119.99848 * 351.78725 * 18 16 14 20 20 Si 1.86798 * 120.00169 * 171.78146 * 18 16 14 21 21 H 1.48498 * 109.47169 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47165 * 120.00429 * 20 18 16 23 23 H 1.48505 * 109.47223 * 240.00256 * 20 18 16 24 24 H 1.09008 * 109.46910 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47684 * 299.99721 * 1 2 3 26 26 H 1.08995 * 109.47201 * 60.00093 * 1 2 3 27 27 H 1.08001 * 120.82318 * 359.97438 * 6 5 3 28 28 H 1.07997 * 119.40372 * 180.02562 * 11 7 6 29 29 H 1.09001 * 109.47188 * 240.64422 * 15 14 13 30 30 H 1.09002 * 109.47137 * 0.64340 * 15 14 13 31 31 H 1.08997 * 109.47512 * 120.64273 * 15 14 13 32 32 H 0.97003 * 120.00062 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4019 2.2196 0.0005 5 6 3.5364 1.2779 0.0006 6 6 4.3111 0.1172 -0.1108 7 6 5.6889 0.2436 -0.1047 8 7 6.5486 -0.9559 -0.2194 9 8 6.0026 -2.1493 -0.3284 10 8 7.8595 -0.8294 -0.2136 11 6 6.2573 1.5011 0.0096 12 7 5.5096 2.5820 0.1078 13 6 4.1875 2.5175 0.1124 14 7 3.4412 3.6805 0.2228 15 6 2.9812 4.1335 1.5378 16 6 3.1430 4.3845 -0.8643 17 1 3.4521 4.0322 -1.8374 18 6 2.3987 5.6438 -0.7420 19 7 1.8958 5.9895 0.3981 20 14 2.1782 6.7471 -2.2332 21 1 2.8435 6.1297 -3.4085 22 1 0.7299 6.9138 -2.5157 23 1 2.7854 8.0747 -1.9609 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 3.8447 -0.8530 -0.1985 28 1 7.3329 1.5983 0.0138 29 1 1.8919 4.1700 1.5489 30 1 3.3294 3.4400 2.3033 31 1 3.3801 5.1276 1.7397 32 1 1.4043 6.8219 0.4791 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166798938.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:06 Heat of formation + Delta-G solvation = 21.610648 kcal Electronic energy + Delta-G solvation = -22115.219297 eV Core-core repulsion = 18468.708574 eV Total energy + Delta-G solvation = -3646.510723 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.089 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -40.12092 -38.92283 -37.66286 -36.05612 -35.65341 -34.27634 -32.13871 -31.38052 -29.75488 -28.25927 -27.36417 -25.79605 -23.62714 -23.44522 -21.51690 -20.20621 -19.26734 -17.75993 -17.29529 -16.70672 -16.17563 -15.97175 -15.75862 -15.32461 -15.23107 -14.85354 -13.82240 -13.76244 -13.60340 -13.29022 -12.97269 -12.89053 -12.30398 -12.26660 -12.04943 -11.78220 -11.73303 -11.58704 -11.43764 -10.84323 -10.35273 -10.05772 -9.94916 -9.09631 -8.98465 -8.94018 -8.82142 -8.76266 -8.34420 -8.00028 -3.88747 0.14173 1.51829 1.89592 2.07245 2.21515 2.59098 2.64501 2.90892 3.30638 3.40367 3.44087 3.62539 4.52967 4.78856 5.24832 5.35995 5.41496 5.48931 5.71469 5.75703 5.83072 5.86147 6.04886 6.16575 6.29390 6.41868 6.58596 6.78368 6.96046 7.23076 7.32411 7.43950 7.81408 7.99324 8.31154 8.47651 9.16506 9.29229 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.017359 B = 0.006247 C = 0.005077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.597637 B = 4481.081777 C = 5513.493667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.363 6.363 3 C 0.507 3.493 4 O -0.532 6.532 5 C -0.186 4.186 6 C 0.053 3.947 7 C -0.145 4.145 8 N 0.051 4.949 9 O -0.398 6.398 10 O -0.387 6.387 11 C 0.099 3.901 12 N -0.433 5.433 13 C 0.014 3.986 14 N -0.264 5.264 15 C 0.069 3.931 16 C 0.067 3.933 17 H 0.164 0.836 18 C -0.011 4.011 19 N -0.648 5.648 20 Si 0.970 3.030 21 H -0.234 1.234 22 H -0.248 1.248 23 H -0.248 1.248 24 H 0.093 0.907 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.135 0.865 28 H 0.146 0.854 29 H 0.096 0.904 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.328 0.672 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.506 13.040 -1.512 18.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.280 6.280 3 C 0.356 3.644 4 O -0.424 6.424 5 C -0.196 4.196 6 C 0.028 3.972 7 C -0.261 4.261 8 N 0.436 4.564 9 O -0.526 6.526 10 O -0.517 6.517 11 C -0.089 4.089 12 N -0.145 5.145 13 C -0.211 4.211 14 N 0.071 4.929 15 C -0.072 4.072 16 C -0.094 4.094 17 H 0.181 0.819 18 C -0.245 4.245 19 N -0.270 5.270 20 Si 0.785 3.215 21 H -0.156 1.156 22 H -0.172 1.172 23 H -0.172 1.172 24 H 0.112 0.888 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.153 0.847 28 H 0.163 0.837 29 H 0.114 0.886 30 H 0.082 0.918 31 H 0.108 0.892 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.669 14.224 -1.005 19.075 hybrid contribution -0.543 -0.743 -0.232 0.949 sum -13.212 13.481 -1.236 18.916 Atomic orbital electron populations 1.23066 0.77662 1.02751 1.01775 1.86616 1.22227 1.33929 1.85185 1.21197 0.89065 0.80811 0.73288 1.90729 1.66870 1.35590 1.49226 1.18419 0.87132 0.93246 1.20834 1.20942 0.91508 0.97405 0.87320 1.19937 0.89178 0.84974 1.31995 1.49175 1.01788 1.02215 1.03233 1.96008 1.77442 1.10043 1.69086 1.96002 0.91543 1.94917 1.69217 1.20991 0.98233 0.85098 1.04529 1.66728 1.04191 1.31311 1.12319 1.15956 0.87284 0.81721 1.36178 1.42406 1.28788 1.14694 1.07026 1.22875 1.02519 0.99326 0.82519 1.24503 0.98927 0.94362 0.91575 0.81881 1.28727 0.95499 0.97919 1.02350 1.69211 1.10932 1.20706 1.26198 0.85100 0.81396 0.78045 0.76911 1.15628 1.17196 1.17159 0.88850 0.92617 0.92519 0.84720 0.83656 0.88596 0.91760 0.89233 0.85587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 72. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 10.56 101.05 1.07 1.63 16 2 O -0.36 -6.71 9.90 -40.62 -0.40 -7.11 16 3 C 0.51 10.27 7.89 34.49 0.27 10.54 16 4 O -0.53 -10.63 13.26 -19.26 -0.26 -10.88 16 5 C -0.19 -4.14 5.91 -104.64 -0.62 -4.76 16 6 C 0.05 1.27 9.25 -38.88 -0.36 0.91 16 7 C -0.15 -3.84 6.90 -79.82 -0.55 -4.39 16 8 N 0.05 1.54 4.98 34.03 0.17 1.71 16 9 O -0.40 -12.40 19.21 -31.57 -0.61 -13.00 16 10 O -0.39 -11.98 19.16 -31.57 -0.60 -12.59 16 11 C 0.10 2.43 10.73 -17.48 -0.19 2.24 16 12 N -0.43 -9.95 10.37 -12.13 -0.13 -10.08 16 13 C 0.01 0.31 5.89 -154.92 -0.91 -0.60 16 14 N -0.26 -4.80 1.57 -120.60 -0.19 -4.99 16 15 C 0.07 1.12 8.26 59.84 0.49 1.62 16 16 C 0.07 1.03 9.16 -13.63 -0.12 0.91 16 17 H 0.16 2.34 7.93 -52.48 -0.42 1.93 16 18 C -0.01 -0.14 5.60 -15.15 -0.08 -0.22 16 19 N -0.65 -7.91 9.56 56.00 0.54 -7.37 16 20 Si 0.97 8.60 29.65 -169.99 -5.04 3.56 16 21 H -0.23 -2.16 7.11 56.52 0.40 -1.76 16 22 H -0.25 -2.24 7.11 56.52 0.40 -1.84 16 23 H -0.25 -2.17 7.11 56.52 0.40 -1.77 16 24 H 0.09 0.98 8.14 -51.92 -0.42 0.56 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.14 3.20 7.31 -52.49 -0.38 2.82 16 28 H 0.15 3.49 7.57 -52.49 -0.40 3.09 16 29 H 0.10 1.56 6.56 -51.93 -0.34 1.22 16 30 H 0.06 1.08 7.90 -51.93 -0.41 0.67 16 31 H 0.09 1.31 7.11 -51.93 -0.37 0.94 16 32 H 0.33 3.11 8.26 -40.82 -0.34 2.78 16 LS Contribution 296.21 15.07 4.46 4.46 Total: -1.00 -33.38 296.21 -5.78 -39.16 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -2.72 Total: 9.25 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: -1.00 Total: 7.88 kcal Atomic # 7 Polarization: -21.12 SS G_CDS: 0.39 Total: -20.73 kcal Atomic # 8 Polarization: -41.72 SS G_CDS: -1.87 Total: -43.58 kcal Atomic # 14 Polarization: 8.60 SS G_CDS: -5.04 Total: 3.56 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -33.38 -5.78 -39.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166798938.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.767 kcal (2) G-P(sol) polarization free energy of solvation -33.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds