Wall clock time and date at job start Wed Apr 15 2020 11:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34747 * 116.99863 * 2 1 4 4 O 1.21498 * 119.99890 * 0.02562 * 3 2 1 5 5 C 1.47477 * 120.00321 * 179.97438 * 3 2 1 6 6 C 1.39993 * 120.60271 * 5.32924 * 5 3 2 7 7 C 1.38362 * 118.35047 * 180.02562 * 6 5 3 8 8 N 1.48022 * 120.26022 * 179.97438 * 7 6 5 9 9 O 1.31697 * 119.99953 * 0.02562 * 8 7 6 10 10 O 1.31699 * 119.99686 * 179.97438 * 8 7 6 11 11 C 1.38465 * 119.48311 * 359.97438 * 7 6 5 12 12 N 1.31801 * 121.19983 * 359.73940 * 11 7 6 13 13 C 1.32362 * 121.80086 * 0.53645 * 12 11 7 14 14 N 1.38620 * 119.81320 * 179.74924 * 13 12 11 15 15 C 1.46494 * 120.00111 * 265.94706 * 14 13 12 16 16 C 1.32907 * 120.00026 * 85.94614 * 14 13 12 17 17 H 1.08006 * 120.00036 * 2.16798 * 16 14 13 18 18 C 1.46798 * 120.00185 * 182.43695 * 16 14 13 19 19 N 1.29320 * 119.99848 * 351.78725 * 18 16 14 20 20 Si 1.86798 * 120.00169 * 171.78146 * 18 16 14 21 21 H 1.48498 * 109.47169 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47165 * 120.00429 * 20 18 16 23 23 H 1.48505 * 109.47223 * 240.00256 * 20 18 16 24 24 H 1.09008 * 109.46910 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47684 * 299.99721 * 1 2 3 26 26 H 1.08995 * 109.47201 * 60.00093 * 1 2 3 27 27 H 1.08001 * 120.82318 * 359.97438 * 6 5 3 28 28 H 1.07997 * 119.40372 * 180.02562 * 11 7 6 29 29 H 1.09001 * 109.47188 * 240.64422 * 15 14 13 30 30 H 1.09002 * 109.47137 * 0.64340 * 15 14 13 31 31 H 1.08997 * 109.47512 * 120.64273 * 15 14 13 32 32 H 0.97003 * 120.00062 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4019 2.2196 0.0005 5 6 3.5364 1.2779 0.0006 6 6 4.3111 0.1172 -0.1108 7 6 5.6889 0.2436 -0.1047 8 7 6.5486 -0.9559 -0.2194 9 8 6.0026 -2.1493 -0.3284 10 8 7.8595 -0.8294 -0.2136 11 6 6.2573 1.5011 0.0096 12 7 5.5096 2.5820 0.1078 13 6 4.1875 2.5175 0.1124 14 7 3.4412 3.6805 0.2228 15 6 2.9812 4.1335 1.5378 16 6 3.1430 4.3845 -0.8643 17 1 3.4521 4.0322 -1.8374 18 6 2.3987 5.6438 -0.7420 19 7 1.8958 5.9895 0.3981 20 14 2.1782 6.7471 -2.2332 21 1 2.8435 6.1297 -3.4085 22 1 0.7299 6.9138 -2.5157 23 1 2.7854 8.0747 -1.9609 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 3.8447 -0.8530 -0.1985 28 1 7.3329 1.5983 0.0138 29 1 1.8919 4.1700 1.5489 30 1 3.3294 3.4400 2.3033 31 1 3.3801 5.1276 1.7397 32 1 1.4043 6.8219 0.4791 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166798938.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:05 Heat of formation + Delta-G solvation = -15.397029 kcal Electronic energy + Delta-G solvation = -22116.824071 eV Core-core repulsion = 18468.708574 eV Total energy + Delta-G solvation = -3648.115496 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.089 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.16909 -40.87221 -39.48111 -37.49993 -36.98847 -36.02641 -33.49266 -32.76379 -31.49818 -30.19832 -28.71682 -27.45229 -25.29912 -25.20629 -23.31014 -21.90471 -21.02000 -19.63550 -18.85356 -18.33526 -17.92112 -17.53795 -17.33144 -16.89029 -16.71769 -16.31511 -15.36863 -15.16143 -15.06415 -14.66448 -14.54892 -14.34258 -13.96494 -13.72067 -13.53277 -13.41830 -13.33678 -12.91938 -12.15360 -12.09404 -11.92652 -11.80045 -11.62152 -10.73678 -10.54302 -10.37217 -10.30455 -10.22453 -9.99071 -9.93922 -6.18943 -1.11770 -0.31489 0.71676 0.77333 0.90642 1.31519 1.55288 1.67854 1.72923 1.89707 2.06244 2.55631 2.60013 2.94051 3.29558 3.73921 3.97187 4.11061 4.24609 4.26790 4.35185 4.37875 4.42110 4.51991 4.67894 4.75551 4.80175 4.98394 5.12517 5.21570 5.34054 5.72190 6.06035 6.33438 6.60335 7.17030 7.39958 8.28034 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.017359 B = 0.006247 C = 0.005077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.597637 B = 4481.081777 C = 5513.493667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.370 6.370 3 C 0.531 3.469 4 O -0.517 6.517 5 C -0.093 4.093 6 C -0.079 4.079 7 C -0.023 4.023 8 N -0.056 5.056 9 O -0.653 6.653 10 O -0.645 6.645 11 C 0.006 3.994 12 N -0.383 5.383 13 C -0.021 4.021 14 N -0.255 5.255 15 C 0.046 3.954 16 C 0.313 3.687 17 H 0.225 0.775 18 C -0.048 4.048 19 N -0.568 5.568 20 Si 1.040 2.960 21 H -0.227 1.227 22 H -0.236 1.236 23 H -0.234 1.234 24 H 0.120 0.880 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.110 0.890 28 H 0.124 0.876 29 H 0.133 0.867 30 H 0.070 0.930 31 H 0.133 0.867 32 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.604 31.884 -2.493 41.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.286 6.286 3 C 0.378 3.622 4 O -0.410 6.410 5 C -0.102 4.102 6 C -0.104 4.104 7 C -0.159 4.159 8 N 0.243 4.757 9 O -0.723 6.723 10 O -0.716 6.716 11 C -0.174 4.174 12 N -0.095 5.095 13 C -0.244 4.244 14 N 0.090 4.910 15 C -0.093 4.093 16 C 0.125 3.875 17 H 0.242 0.758 18 C -0.286 4.286 19 N -0.191 5.191 20 Si 0.849 3.151 21 H -0.148 1.148 22 H -0.159 1.159 23 H -0.157 1.157 24 H 0.138 0.862 25 H 0.091 0.909 26 H 0.095 0.905 27 H 0.128 0.872 28 H 0.141 0.859 29 H 0.150 0.850 30 H 0.089 0.911 31 H 0.151 0.849 32 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -26.178 32.197 -1.809 41.536 hybrid contribution 0.238 -1.901 0.102 1.918 sum -25.940 30.296 -1.707 39.921 Atomic orbital electron populations 1.23622 0.73606 1.05625 1.03370 1.86687 1.26027 1.32439 1.83398 1.20708 0.87823 0.81766 0.71912 1.90637 1.66605 1.35212 1.48526 1.18838 0.88966 0.92139 1.10248 1.20477 0.91075 0.97711 1.01120 1.20430 0.90384 0.86048 1.19041 1.47738 0.99426 1.00402 1.28110 1.95598 1.77685 1.13368 1.85683 1.95596 0.94987 1.95093 1.85967 1.20332 0.97437 0.85063 1.14545 1.66414 1.03908 1.30519 1.08656 1.16151 0.87565 0.82413 1.38238 1.43793 1.24366 1.12269 1.10572 1.23559 1.03845 1.02219 0.79714 1.27949 0.79296 0.86012 0.94239 0.75841 1.30141 0.95457 0.96846 1.06115 1.69033 1.02242 1.21835 1.26037 0.84193 0.82420 0.76251 0.72252 1.14826 1.15868 1.15697 0.86192 0.90856 0.90501 0.87217 0.85859 0.84964 0.91079 0.84922 0.80189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.81 16 2 O -0.37 -12.24 9.90 -56.57 -0.56 -12.80 16 3 C 0.53 17.59 7.89 70.26 0.55 18.14 16 4 O -0.52 -13.49 13.26 19.84 0.26 -13.23 16 5 C -0.09 -3.92 5.91 -19.87 -0.12 -4.04 16 6 C -0.08 -4.50 9.25 22.73 0.21 -4.29 16 7 C -0.02 -1.55 6.90 36.46 0.25 -1.30 16 8 N -0.06 -4.82 4.98 -46.26 -0.23 -5.05 16 9 O -0.65 -59.25 19.21 3.52 0.07 -59.18 16 10 O -0.64 -58.43 19.16 3.52 0.07 -58.37 16 11 C 0.01 0.35 10.73 84.75 0.91 1.26 16 12 N -0.38 -16.97 10.37 -192.29 -1.99 -18.96 16 13 C -0.02 -0.75 5.89 133.53 0.79 0.03 16 14 N -0.26 -5.31 1.57 -535.46 -0.84 -6.15 16 15 C 0.05 0.71 8.26 127.77 1.06 1.77 16 16 C 0.31 3.27 9.16 86.77 0.79 4.07 16 17 H 0.23 1.29 7.93 -2.91 -0.02 1.27 16 18 C -0.05 -0.11 5.60 87.30 0.49 0.38 16 19 N -0.57 -1.22 9.56 23.26 0.22 -1.00 16 20 Si 1.04 -2.24 29.65 68.60 2.03 -0.21 16 21 H -0.23 0.15 7.11 99.48 0.71 0.86 16 22 H -0.24 0.31 7.11 99.48 0.71 1.01 16 23 H -0.23 0.35 7.11 99.48 0.71 1.06 16 24 H 0.12 1.91 8.14 -2.38 -0.02 1.89 16 25 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.11 6.70 7.31 -2.91 -0.02 6.68 16 28 H 0.12 7.70 7.57 -2.91 -0.02 7.68 16 29 H 0.13 1.67 6.56 -2.39 -0.02 1.65 16 30 H 0.07 1.45 7.90 -2.39 -0.02 1.43 16 31 H 0.13 1.27 7.11 -2.39 -0.02 1.26 16 32 H 0.38 -1.36 8.26 -92.71 -0.77 -2.13 16 Total: -1.00 -138.27 296.21 6.34 -131.93 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: 1.18 Total: 25.19 kcal Atomic # 6 Polarization: 11.70 SS G_CDS: 6.13 Total: 17.84 kcal Atomic # 7 Polarization: -28.32 SS G_CDS: -2.85 Total: -31.16 kcal Atomic # 8 Polarization: -143.42 SS G_CDS: -0.16 Total: -143.58 kcal Atomic # 14 Polarization: -2.24 SS G_CDS: 2.03 Total: -0.21 kcal Total: -138.27 6.34 -131.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166798938.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.533 kcal (2) G-P(sol) polarization free energy of solvation -138.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -131.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds