Wall clock time and date at job start Wed Apr 15 2020 11:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48490 * 109.47405 * 240.00239 * 3 2 1 5 5 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46573 * 179.97438 * 9 7 2 11 11 S 1.81409 * 109.46814 * 179.97438 * 10 9 7 12 12 O 1.42096 * 110.54119 * 291.62426 * 11 10 9 13 13 O 1.42097 * 110.54031 * 68.37593 * 11 10 9 14 14 N 1.65601 * 104.44942 * 180.02562 * 11 10 9 15 15 C 1.47016 * 125.64959 * 90.02261 * 14 11 10 16 16 C 1.54325 * 107.27151 * 181.02310 * 15 14 11 17 17 C 1.55147 * 102.94321 * 22.19608 * 16 15 14 18 18 F 1.39900 * 111.00824 * 82.57208 * 17 16 15 19 19 C 1.52996 * 111.00616 * 206.42196 * 17 16 15 20 20 O 1.42896 * 109.47585 * 298.54731 * 19 17 16 21 21 C 1.47427 * 125.64602 * 269.71924 * 14 11 10 22 22 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 24 24 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 25 25 H 1.09000 * 109.47486 * 299.99934 * 10 9 7 26 26 H 1.09001 * 109.47362 * 60.00657 * 10 9 7 27 27 H 1.09004 * 109.88602 * 300.44211 * 15 14 11 28 28 H 1.09004 * 109.88376 * 61.45558 * 15 14 11 29 29 H 1.09001 * 110.71907 * 140.56206 * 16 15 14 30 30 H 1.08996 * 110.72306 * 263.82935 * 16 15 14 31 31 H 1.09002 * 109.47041 * 58.54519 * 19 17 16 32 32 H 1.09006 * 109.47597 * 178.54277 * 19 17 16 33 33 H 0.96695 * 114.00420 * 180.02562 * 20 19 17 34 34 H 1.09000 * 110.36568 * 274.74162 * 21 14 11 35 35 H 1.08998 * 110.36971 * 37.06838 * 21 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 16 1.3382 -5.2331 -0.0034 12 8 0.6647 -5.4204 1.2337 13 8 0.6639 -5.4189 -1.2402 14 7 2.5204 -6.3927 -0.0038 15 6 3.1317 -6.9936 1.1907 16 6 4.1956 -7.9999 0.7039 17 6 4.5197 -7.4977 -0.7278 18 9 5.4485 -6.4520 -0.6942 19 6 5.0187 -8.6431 -1.6109 20 8 6.2232 -9.1794 -1.0602 21 6 3.1297 -6.9981 -1.2020 22 1 -0.4849 0.8400 0.0004 23 1 0.6240 -2.5575 0.8880 24 1 0.6247 -2.5562 -0.8920 25 1 2.8720 -3.6035 -0.8927 26 1 2.8719 -3.6051 0.8873 27 1 3.6034 -6.2189 1.7953 28 1 2.3710 -7.5093 1.7768 29 1 5.0823 -7.9599 1.3366 30 1 3.7866 -9.0098 0.6750 31 1 4.2601 -9.4245 -1.6554 32 1 5.2139 -8.2686 -2.6159 33 1 6.5973 -9.9109 -1.5700 34 1 2.5242 -7.8329 -1.5548 35 1 3.2432 -6.2517 -1.9882 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338424179.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:38 Heat of formation + Delta-G solvation = -173.195001 kcal Electronic energy + Delta-G solvation = -20745.698454 eV Core-core repulsion = 17206.264314 eV Total energy + Delta-G solvation = -3539.434140 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.093 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -47.75716 -38.45228 -36.82357 -36.65848 -35.49258 -33.88369 -31.38588 -31.15114 -29.77576 -25.81593 -25.52382 -22.71994 -21.47599 -20.77449 -18.77240 -17.82774 -17.64474 -16.94632 -16.48144 -15.85168 -15.43132 -15.40168 -15.05522 -14.56569 -14.44343 -14.26795 -13.74277 -13.29377 -13.23724 -12.97369 -12.56560 -12.45796 -11.77437 -11.71365 -11.64813 -11.60228 -11.45886 -11.10293 -11.05319 -10.96789 -10.84306 -10.48502 -10.43908 -10.36930 -9.76909 -9.36316 -8.82890 -8.49084 -6.11447 -4.16996 0.66854 2.92036 3.28880 3.33275 3.35613 3.45630 4.00097 4.09230 4.22212 4.28567 4.39259 4.51170 4.66326 4.88948 4.92493 5.05959 5.08848 5.23651 5.34167 5.49982 5.54956 5.63170 5.68986 5.74012 5.92891 6.01524 6.33247 6.49712 7.14724 7.29704 7.35670 7.81749 8.18403 8.86226 9.47723 10.99587 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.025275 B = 0.004514 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.547436 B = 6200.953956 C = 6833.382795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.058 3.942 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.521 4.521 8 H 0.061 0.939 9 C 0.028 3.972 10 C -0.586 4.586 11 S 2.605 3.395 12 O -0.958 6.958 13 O -0.960 6.960 14 N -1.017 6.017 15 C 0.116 3.884 16 C -0.137 4.137 17 C 0.106 3.894 18 F -0.187 7.187 19 C 0.066 3.934 20 O -0.564 6.564 21 C 0.109 3.891 22 H 0.266 0.734 23 H 0.034 0.966 24 H 0.034 0.966 25 H 0.120 0.880 26 H 0.120 0.880 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.384 0.616 34 H 0.089 0.911 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.303 -19.494 -2.279 22.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.080 0.920 9 C -0.011 4.011 10 C -0.720 4.720 11 S 2.705 3.295 12 O -0.949 6.949 13 O -0.951 6.951 14 N -0.853 5.853 15 C -0.009 4.009 16 C -0.176 4.176 17 C 0.086 3.914 18 F -0.168 7.168 19 C -0.013 4.013 20 O -0.369 6.369 21 C -0.017 4.017 22 H 0.075 0.925 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.138 0.862 26 H 0.139 0.861 27 H 0.090 0.910 28 H 0.097 0.903 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.231 0.769 34 H 0.107 0.893 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.029 -19.044 -1.813 21.154 hybrid contribution 1.229 0.932 -0.454 1.608 sum 10.258 -18.112 -2.267 20.938 Atomic orbital electron populations 1.69945 1.06121 1.27320 1.49542 1.25064 0.94977 0.99535 0.94862 0.86514 0.79479 0.82444 0.78746 1.20058 1.21063 1.20061 1.20972 0.93081 0.89718 1.52231 0.92043 1.18977 0.92683 0.90566 0.98867 1.30472 1.13671 1.17610 1.10270 1.05411 0.74041 0.75949 0.74089 1.93539 1.70844 1.85180 1.45324 1.93538 1.70869 1.85270 1.45419 1.58966 1.58596 1.56091 1.11656 1.21740 0.95415 0.96298 0.87432 1.23140 0.99876 0.99729 0.94867 1.22062 0.87157 0.84646 0.97521 1.92903 1.67189 1.59281 1.97401 1.22532 0.87802 0.94924 0.96084 1.86507 1.40833 1.54641 1.54960 1.22389 0.90989 0.99784 0.88557 0.92470 0.94819 0.94824 0.86164 0.86143 0.91015 0.90339 0.88558 0.88938 0.91253 0.91903 0.76885 0.89330 0.89029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -14.64 9.11 -34.44 -0.31 -14.96 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 9 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 10 C -0.59 -11.68 6.12 37.16 0.23 -11.45 16 11 S 2.61 48.00 5.65 -107.50 -0.61 47.39 16 12 O -0.96 -20.10 17.60 -57.54 -1.01 -21.11 16 13 O -0.96 -19.90 17.60 -57.54 -1.01 -20.91 16 14 N -1.02 -14.31 3.62 -111.29 -0.40 -14.71 16 15 C 0.12 1.37 6.89 -3.07 -0.02 1.35 16 16 C -0.14 -1.29 5.98 -24.90 -0.15 -1.44 16 17 C 0.11 1.10 1.39 -88.36 -0.12 0.98 16 18 F -0.19 -2.54 17.02 2.25 0.04 -2.50 16 19 C 0.07 0.48 6.33 37.16 0.24 0.71 16 20 O -0.56 -4.35 13.39 -35.23 -0.47 -4.82 16 21 C 0.11 1.24 6.18 -2.41 -0.01 1.23 16 22 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 23 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 24 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.12 2.19 8.14 -51.92 -0.42 1.77 16 26 H 0.12 2.20 8.14 -51.92 -0.42 1.78 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.09 0.68 8.04 -51.93 -0.42 0.26 16 31 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.38 1.07 9.12 45.56 0.42 1.49 16 34 H 0.09 0.81 8.01 -51.93 -0.42 0.40 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 314.05 15.07 4.73 4.73 Total: -1.00 -36.75 314.05 -7.60 -44.35 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -4.18 Total: -1.48 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: -0.39 Total: -21.42 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: 0.33 Total: -40.69 kcal Atomic # 8 Polarization: -44.34 SS G_CDS: -2.50 Total: -46.84 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.04 Total: -2.50 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 48.00 SS G_CDS: -0.61 Total: 47.39 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -36.75 -7.60 -44.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338424179.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.848 kcal (2) G-P(sol) polarization free energy of solvation -36.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds