Wall clock time and date at job start Wed Apr 15 2020 11:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48490 * 109.47405 * 240.00239 * 3 2 1 5 5 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46573 * 179.97438 * 9 7 2 11 11 S 1.81409 * 109.46814 * 179.97438 * 10 9 7 12 12 O 1.42096 * 110.54119 * 291.62426 * 11 10 9 13 13 O 1.42097 * 110.54031 * 68.37593 * 11 10 9 14 14 N 1.65601 * 104.44942 * 180.02562 * 11 10 9 15 15 C 1.47016 * 125.64959 * 90.02261 * 14 11 10 16 16 C 1.54325 * 107.27151 * 181.02310 * 15 14 11 17 17 C 1.55147 * 102.94321 * 22.19608 * 16 15 14 18 18 F 1.39900 * 111.00824 * 82.57208 * 17 16 15 19 19 C 1.52996 * 111.00616 * 206.42196 * 17 16 15 20 20 O 1.42896 * 109.47585 * 298.54731 * 19 17 16 21 21 C 1.47427 * 125.64602 * 269.71924 * 14 11 10 22 22 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 24 24 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 25 25 H 1.09000 * 109.47486 * 299.99934 * 10 9 7 26 26 H 1.09001 * 109.47362 * 60.00657 * 10 9 7 27 27 H 1.09004 * 109.88602 * 300.44211 * 15 14 11 28 28 H 1.09004 * 109.88376 * 61.45558 * 15 14 11 29 29 H 1.09001 * 110.71907 * 140.56206 * 16 15 14 30 30 H 1.08996 * 110.72306 * 263.82935 * 16 15 14 31 31 H 1.09002 * 109.47041 * 58.54519 * 19 17 16 32 32 H 1.09006 * 109.47597 * 178.54277 * 19 17 16 33 33 H 0.96695 * 114.00420 * 180.02562 * 20 19 17 34 34 H 1.09000 * 110.36568 * 274.74162 * 21 14 11 35 35 H 1.08998 * 110.36971 * 37.06838 * 21 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 16 1.3382 -5.2331 -0.0034 12 8 0.6647 -5.4204 1.2337 13 8 0.6639 -5.4189 -1.2402 14 7 2.5204 -6.3927 -0.0038 15 6 3.1317 -6.9936 1.1907 16 6 4.1956 -7.9999 0.7039 17 6 4.5197 -7.4977 -0.7278 18 9 5.4485 -6.4520 -0.6942 19 6 5.0187 -8.6431 -1.6109 20 8 6.2232 -9.1794 -1.0602 21 6 3.1297 -6.9981 -1.2020 22 1 -0.4849 0.8400 0.0004 23 1 0.6240 -2.5575 0.8880 24 1 0.6247 -2.5562 -0.8920 25 1 2.8720 -3.6035 -0.8927 26 1 2.8719 -3.6051 0.8873 27 1 3.6034 -6.2189 1.7953 28 1 2.3710 -7.5093 1.7768 29 1 5.0823 -7.9599 1.3366 30 1 3.7866 -9.0098 0.6750 31 1 4.2601 -9.4245 -1.6554 32 1 5.2139 -8.2686 -2.6159 33 1 6.5973 -9.9109 -1.5700 34 1 2.5242 -7.8329 -1.5548 35 1 3.2432 -6.2517 -1.9882 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338424179.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:37 Heat of formation + Delta-G solvation = -203.542851 kcal Electronic energy + Delta-G solvation = -20747.014435 eV Core-core repulsion = 17206.264314 eV Total energy + Delta-G solvation = -3540.750122 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.093 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.65348 -39.30777 -38.26258 -37.42133 -37.09569 -35.92946 -33.16355 -32.25678 -30.60819 -27.63613 -26.46892 -23.91119 -23.19870 -21.55060 -20.09390 -19.19682 -18.47405 -18.31997 -17.76250 -17.18543 -16.82220 -16.58552 -16.43444 -15.93270 -15.40817 -15.29825 -14.97603 -14.59157 -14.48136 -14.03908 -13.83012 -13.76924 -13.39981 -13.30256 -13.21583 -12.93971 -12.84496 -12.64292 -12.45863 -12.27242 -12.19741 -11.96126 -11.78052 -11.53729 -11.21902 -10.96344 -10.66314 -10.02907 -8.28376 -6.42839 -0.83129 1.39127 1.42730 1.51048 1.62291 2.36379 2.72020 2.77591 3.04590 3.08025 3.29223 3.43281 3.59284 3.93808 4.00462 4.07294 4.17405 4.22653 4.31562 4.51562 4.59797 4.66658 4.69325 4.87227 4.91093 4.95581 5.20096 5.20453 5.22983 5.32036 5.65223 6.03603 6.69785 6.90579 7.27324 8.83683 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.025275 B = 0.004514 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.547436 B = 6200.953956 C = 6833.382795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.975 3.025 4 H -0.264 1.264 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.544 4.544 8 H 0.072 0.928 9 C 0.022 3.978 10 C -0.591 4.591 11 S 2.638 3.362 12 O -0.986 6.986 13 O -0.984 6.984 14 N -1.014 6.014 15 C 0.104 3.896 16 C -0.127 4.127 17 C 0.097 3.903 18 F -0.210 7.210 19 C 0.069 3.931 20 O -0.585 6.585 21 C 0.097 3.903 22 H 0.269 0.731 23 H 0.008 0.992 24 H 0.009 0.991 25 H 0.136 0.864 26 H 0.135 0.865 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.120 0.880 31 H 0.100 0.900 32 H 0.071 0.929 33 H 0.404 0.596 34 H 0.117 0.883 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.171 -20.838 -2.629 24.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.200 4.200 3 Si 0.798 3.202 4 H -0.188 1.188 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.090 0.910 9 C -0.017 4.017 10 C -0.722 4.722 11 S 2.736 3.264 12 O -0.977 6.977 13 O -0.975 6.975 14 N -0.853 5.853 15 C -0.021 4.021 16 C -0.166 4.166 17 C 0.077 3.923 18 F -0.191 7.191 19 C -0.009 4.009 20 O -0.394 6.394 21 C -0.029 4.029 22 H 0.077 0.923 23 H 0.027 0.973 24 H 0.028 0.972 25 H 0.154 0.846 26 H 0.153 0.847 27 H 0.088 0.912 28 H 0.103 0.897 29 H 0.117 0.883 30 H 0.138 0.862 31 H 0.118 0.882 32 H 0.089 0.911 33 H 0.255 0.745 34 H 0.135 0.865 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.917 -20.391 -2.175 23.232 hybrid contribution 0.681 1.235 -0.345 1.452 sum 11.598 -19.156 -2.520 22.535 Atomic orbital electron populations 1.70085 1.08000 1.28493 1.50598 1.26103 0.95888 1.03811 0.94197 0.85359 0.78171 0.77277 0.79415 1.18833 1.20616 1.18895 1.21465 0.93849 0.90924 1.52001 0.91022 1.18823 0.93501 0.92889 0.96509 1.30414 1.12877 1.17151 1.11808 1.04094 0.73957 0.75508 0.72824 1.93496 1.72127 1.85520 1.46512 1.93498 1.72032 1.85568 1.46399 1.58520 1.58225 1.54624 1.13902 1.22044 0.96342 0.96990 0.86709 1.23155 0.99058 1.00189 0.94171 1.22353 0.86162 0.85011 0.98747 1.92857 1.68002 1.60672 1.97563 1.22523 0.88582 0.94530 0.95289 1.86442 1.41154 1.55821 1.55984 1.22761 0.92130 1.00631 0.87353 0.92258 0.97336 0.97230 0.84605 0.84671 0.91193 0.89674 0.88264 0.86205 0.88241 0.91127 0.74463 0.86513 0.89217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.32 13.29 21.45 0.28 -57.04 16 2 C 0.00 -0.08 5.46 84.66 0.46 0.39 16 3 Si 0.97 44.06 29.54 68.60 2.03 46.09 16 4 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 7 C -0.54 -31.04 9.11 25.60 0.23 -30.81 16 8 H 0.07 3.83 7.74 -2.91 -0.02 3.80 16 9 C 0.02 1.17 4.98 29.85 0.15 1.32 16 10 C -0.59 -23.81 6.12 71.98 0.44 -23.37 16 11 S 2.64 97.45 5.65 -56.49 -0.32 97.14 16 12 O -0.99 -41.79 17.60 -127.65 -2.25 -44.04 16 13 O -0.98 -40.95 17.60 -127.65 -2.25 -43.20 16 14 N -1.01 -27.13 3.62 -506.01 -1.83 -28.96 16 15 C 0.10 2.26 6.89 86.73 0.60 2.86 16 16 C -0.13 -2.03 5.98 31.78 0.19 -1.84 16 17 C 0.10 1.77 1.39 -9.33 -0.01 1.76 16 18 F -0.21 -5.39 17.02 44.97 0.77 -4.63 16 19 C 0.07 0.77 6.33 71.98 0.46 1.22 16 20 O -0.58 -7.19 13.39 -148.98 -1.99 -9.19 16 21 C 0.10 1.98 6.18 86.93 0.54 2.52 16 22 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 23 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 24 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 25 H 0.14 4.95 8.14 -2.39 -0.02 4.93 16 26 H 0.14 4.95 8.14 -2.39 -0.02 4.93 16 27 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 28 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 29 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.12 1.27 8.04 -2.39 -0.02 1.25 16 31 H 0.10 0.51 8.10 -2.39 -0.02 0.49 16 32 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.40 0.97 9.12 -74.06 -0.68 0.29 16 34 H 0.12 1.75 8.01 -2.39 -0.02 1.73 16 35 H 0.09 1.86 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -80.38 314.05 -2.09 -82.47 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: 0.42 Total: 7.31 kcal Atomic # 6 Polarization: -49.00 SS G_CDS: 3.05 Total: -45.95 kcal Atomic # 7 Polarization: -84.45 SS G_CDS: -1.55 Total: -86.00 kcal Atomic # 8 Polarization: -89.94 SS G_CDS: -6.49 Total: -96.43 kcal Atomic # 9 Polarization: -5.39 SS G_CDS: 0.77 Total: -4.63 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: 97.45 SS G_CDS: -0.32 Total: 97.14 kcal Total: -80.38 -2.09 -82.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338424179.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.077 kcal (2) G-P(sol) polarization free energy of solvation -80.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds