Wall clock time and date at job start Wed Apr 15 2020 11:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00178 * 2 1 4 4 H 1.48494 * 109.47099 * 269.99680 * 3 2 1 5 5 H 1.48503 * 109.46897 * 30.00246 * 3 2 1 6 6 H 1.48502 * 109.46811 * 150.00082 * 3 2 1 7 7 C 1.37881 * 119.99477 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99599 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00416 * 359.97438 * 7 2 1 10 10 O 1.42908 * 113.28214 * 313.07303 * 9 7 2 11 11 C 1.53490 * 114.20749 * 180.02562 * 9 7 2 12 12 N 1.47066 * 87.98682 * 220.14812 * 11 9 7 13 13 S 1.65598 * 136.06288 * 207.08483 * 12 11 9 14 14 O 1.42104 * 104.27651 * 333.93197 * 13 12 11 15 15 O 1.42095 * 104.28128 * 206.07608 * 13 12 11 16 16 C 1.81399 * 104.45041 * 90.00006 * 13 12 11 17 17 C 1.52997 * 109.47147 * 180.02562 * 16 13 12 18 18 C 1.53006 * 109.47127 * 180.02562 * 17 16 13 19 19 C 1.52997 * 109.47127 * 180.02562 * 18 17 16 20 20 F 1.39895 * 109.47162 * 179.97438 * 19 18 17 21 21 C 1.47070 * 87.88474 * 27.34076 * 12 11 9 22 22 H 0.97007 * 119.99575 * 0.02562 * 1 2 3 23 23 H 0.96702 * 113.99769 * 46.93237 * 10 9 7 24 24 H 1.09001 * 113.46759 * 105.37248 * 11 9 7 25 25 H 1.08996 * 113.52278 * 334.93625 * 11 9 7 26 26 H 1.08996 * 109.47243 * 60.00524 * 16 13 12 27 27 H 1.09001 * 109.47190 * 300.00108 * 16 13 12 28 28 H 1.09001 * 109.47502 * 60.00399 * 17 16 13 29 29 H 1.09001 * 109.47289 * 300.00196 * 17 16 13 30 30 H 1.09001 * 109.47002 * 299.99574 * 18 17 16 31 31 H 1.08993 * 109.46955 * 60.00011 * 18 17 16 32 32 H 1.09001 * 109.47289 * 299.99953 * 19 18 17 33 33 H 1.09004 * 109.47261 * 59.99697 * 19 18 17 34 34 H 1.09003 * 113.46325 * 87.43478 * 21 12 11 35 35 H 1.08992 * 113.47438 * 217.87556 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 0.1925 -2.5403 0.9588 11 6 2.1486 -3.7442 -0.0005 12 7 1.2071 -4.3594 -0.9482 13 16 0.7457 -5.9008 -1.3398 14 8 1.8686 -6.7008 -0.9957 15 8 0.3015 -5.8024 -2.6860 16 6 -0.6484 -6.2510 -0.2333 17 6 -1.1693 -7.6645 -0.5009 18 6 -2.3456 -7.9596 0.4320 19 6 -2.8661 -9.3733 0.1649 20 9 -3.9412 -9.6434 1.0183 21 6 0.8603 -3.0033 -1.3996 22 1 -0.4850 0.8401 -0.0004 23 1 -0.3711 -1.7546 0.9565 24 1 2.1875 -4.2514 0.9635 25 1 3.1373 -3.5677 -0.4239 26 1 -1.4454 -5.5296 -0.4135 27 1 -0.3178 -6.1760 0.8026 28 1 -0.3722 -8.3857 -0.3203 29 1 -1.4998 -7.7399 -1.5368 30 1 -2.0154 -7.8841 1.4681 31 1 -3.1425 -7.2384 0.2511 32 1 -3.1961 -9.4493 -0.8711 33 1 -2.0688 -10.0943 0.3461 34 1 1.5092 -2.6305 -2.1921 35 1 -0.1983 -2.8791 -1.6275 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344703183.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:41 Heat of formation + Delta-G solvation = -148.848106 kcal Electronic energy + Delta-G solvation = -20450.608502 eV Core-core repulsion = 16912.230122 eV Total energy + Delta-G solvation = -3538.378380 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.093 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -47.81005 -38.64616 -36.72595 -35.78444 -35.55604 -34.00794 -32.18889 -29.99558 -27.90584 -25.09528 -24.83511 -24.06247 -21.71092 -19.67597 -18.29658 -17.61409 -16.79029 -16.69091 -16.25202 -15.93198 -15.87907 -15.19530 -14.90191 -14.71963 -14.27729 -13.74262 -13.30859 -13.08465 -12.81462 -12.72619 -12.32428 -12.14467 -11.81523 -11.71183 -11.70468 -11.54681 -11.37378 -11.29268 -11.09258 -10.87038 -10.81202 -10.51186 -10.43363 -10.25561 -9.31762 -8.81454 -8.55081 -8.08703 -6.40077 -4.49296 0.56012 3.04578 3.14989 3.23185 3.26585 4.02127 4.18343 4.33659 4.34441 4.48863 4.54938 4.78636 4.79787 4.86696 4.94019 5.29555 5.31326 5.40127 5.49115 5.74419 5.79271 5.94523 6.02653 6.11290 6.28999 6.37714 6.64216 6.70845 7.00719 7.48453 7.65550 7.83132 8.53999 9.21302 9.45513 10.66589 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.027496 B = 0.004146 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.098248 B = 6751.332600 C = 7370.363869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.071 3.929 3 Si 0.909 3.091 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.533 4.533 8 H 0.073 0.927 9 C 0.237 3.763 10 O -0.575 6.575 11 C 0.135 3.865 12 N -1.044 6.044 13 S 2.634 3.366 14 O -0.967 6.967 15 O -0.964 6.964 16 C -0.628 4.628 17 C -0.110 4.110 18 C -0.146 4.146 19 C 0.058 3.942 20 F -0.220 7.220 21 C 0.106 3.894 22 H 0.273 0.727 23 H 0.394 0.606 24 H 0.063 0.937 25 H 0.085 0.915 26 H 0.134 0.866 27 H 0.134 0.866 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.450 -11.069 0.039 11.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.131 4.131 3 Si 0.736 3.264 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.572 4.572 8 H 0.091 0.909 9 C 0.194 3.806 10 O -0.388 6.388 11 C 0.010 3.990 12 N -0.884 5.884 13 S 2.730 3.270 14 O -0.958 6.958 15 O -0.955 6.955 16 C -0.756 4.756 17 C -0.149 4.149 18 C -0.184 4.184 19 C 0.003 3.997 20 F -0.201 7.201 21 C -0.019 4.019 22 H 0.084 0.916 23 H 0.251 0.749 24 H 0.081 0.919 25 H 0.103 0.897 26 H 0.153 0.847 27 H 0.152 0.848 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.054 -12.316 -0.528 12.700 hybrid contribution -0.423 1.587 0.322 1.674 sum -3.477 -10.729 -0.206 11.280 Atomic orbital electron populations 1.69254 1.06208 1.28156 1.50456 1.25078 0.95017 0.99909 0.93085 0.86320 0.79787 0.81940 0.78392 1.20309 1.20962 1.19548 1.21518 0.94017 0.89984 1.51678 0.90931 1.19787 0.85311 0.91083 0.84440 1.85974 1.45344 1.48504 1.59001 1.22799 0.93080 0.92555 0.90548 1.59679 1.54516 1.20238 1.53921 1.04049 0.75811 0.72168 0.74976 1.93542 1.47957 1.68736 1.85522 1.93548 1.83944 1.85685 1.32333 1.30666 1.21372 1.04893 1.18682 1.21207 0.98951 0.93794 1.00984 1.22130 0.98579 0.96459 1.01278 1.22063 0.86805 0.97590 0.93245 1.92764 1.58676 1.95161 1.73515 1.23665 0.99927 0.76406 1.01934 0.91626 0.74908 0.91876 0.89721 0.84734 0.84772 0.90164 0.90158 0.90129 0.90097 0.90546 0.90563 0.90284 0.92071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.36 11.01 55.43 0.61 -21.75 16 2 C 0.07 1.74 5.39 -17.82 -0.10 1.65 16 3 Si 0.91 19.17 29.54 -169.99 -5.02 14.15 16 4 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.53 -13.04 8.70 -34.44 -0.30 -13.34 16 8 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 9 C 0.24 5.44 1.58 -91.13 -0.14 5.30 16 10 O -0.57 -13.69 13.55 -35.23 -0.48 -14.17 16 11 C 0.14 2.72 8.10 -8.51 -0.07 2.65 16 12 N -1.04 -20.30 4.10 -125.01 -0.51 -20.82 16 13 S 2.63 45.04 5.96 -107.50 -0.64 44.39 16 14 O -0.97 -18.45 18.07 -57.54 -1.04 -19.49 16 15 O -0.96 -18.85 18.07 -57.54 -1.04 -19.89 16 16 C -0.63 -8.23 6.18 37.16 0.23 -8.00 16 17 C -0.11 -1.17 5.22 -26.73 -0.14 -1.31 16 18 C -0.15 -1.40 5.67 -26.73 -0.15 -1.55 16 19 C 0.06 0.49 7.55 37.16 0.28 0.77 16 20 F -0.22 -2.48 17.36 2.25 0.04 -2.44 16 21 C 0.11 2.27 8.13 -8.37 -0.07 2.21 16 22 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 23 H 0.39 9.70 6.32 45.56 0.29 9.99 16 24 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 25 H 0.08 1.60 8.10 -51.93 -0.42 1.18 16 26 H 0.13 1.72 8.14 -51.93 -0.42 1.29 16 27 H 0.13 1.67 8.14 -51.92 -0.42 1.25 16 28 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 1.67 8.10 -51.93 -0.42 1.25 16 35 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 315.56 15.07 4.76 4.76 Total: -1.00 -29.47 315.56 -8.11 -37.58 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -4.33 Total: 9.31 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: -0.46 Total: -11.62 kcal Atomic # 7 Polarization: -42.67 SS G_CDS: 0.10 Total: -42.57 kcal Atomic # 8 Polarization: -50.99 SS G_CDS: -2.56 Total: -53.55 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.04 Total: -2.44 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.15 kcal Atomic # 16 Polarization: 45.04 SS G_CDS: -0.64 Total: 44.39 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.47 -8.11 -37.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344703183.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.272 kcal (2) G-P(sol) polarization free energy of solvation -29.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds