Wall clock time and date at job start Wed Apr 15 2020 11:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00178 * 2 1 4 4 H 1.48494 * 109.47099 * 269.99680 * 3 2 1 5 5 H 1.48503 * 109.46897 * 30.00246 * 3 2 1 6 6 H 1.48502 * 109.46811 * 150.00082 * 3 2 1 7 7 C 1.37881 * 119.99477 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99599 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00416 * 359.97438 * 7 2 1 10 10 O 1.42908 * 113.28214 * 313.07303 * 9 7 2 11 11 C 1.53490 * 114.20749 * 180.02562 * 9 7 2 12 12 N 1.47066 * 87.98682 * 220.14812 * 11 9 7 13 13 S 1.65598 * 136.06288 * 207.08483 * 12 11 9 14 14 O 1.42104 * 104.27651 * 333.93197 * 13 12 11 15 15 O 1.42095 * 104.28128 * 206.07608 * 13 12 11 16 16 C 1.81399 * 104.45041 * 90.00006 * 13 12 11 17 17 C 1.52997 * 109.47147 * 180.02562 * 16 13 12 18 18 C 1.53006 * 109.47127 * 180.02562 * 17 16 13 19 19 C 1.52997 * 109.47127 * 180.02562 * 18 17 16 20 20 F 1.39895 * 109.47162 * 179.97438 * 19 18 17 21 21 C 1.47070 * 87.88474 * 27.34076 * 12 11 9 22 22 H 0.97007 * 119.99575 * 0.02562 * 1 2 3 23 23 H 0.96702 * 113.99769 * 46.93237 * 10 9 7 24 24 H 1.09001 * 113.46759 * 105.37248 * 11 9 7 25 25 H 1.08996 * 113.52278 * 334.93625 * 11 9 7 26 26 H 1.08996 * 109.47243 * 60.00524 * 16 13 12 27 27 H 1.09001 * 109.47190 * 300.00108 * 16 13 12 28 28 H 1.09001 * 109.47502 * 60.00399 * 17 16 13 29 29 H 1.09001 * 109.47289 * 300.00196 * 17 16 13 30 30 H 1.09001 * 109.47002 * 299.99574 * 18 17 16 31 31 H 1.08993 * 109.46955 * 60.00011 * 18 17 16 32 32 H 1.09001 * 109.47289 * 299.99953 * 19 18 17 33 33 H 1.09004 * 109.47261 * 59.99697 * 19 18 17 34 34 H 1.09003 * 113.46325 * 87.43478 * 21 12 11 35 35 H 1.08992 * 113.47438 * 217.87556 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 0.1925 -2.5403 0.9588 11 6 2.1486 -3.7442 -0.0005 12 7 1.2071 -4.3594 -0.9482 13 16 0.7457 -5.9008 -1.3398 14 8 1.8686 -6.7008 -0.9957 15 8 0.3015 -5.8024 -2.6860 16 6 -0.6484 -6.2510 -0.2333 17 6 -1.1693 -7.6645 -0.5009 18 6 -2.3456 -7.9596 0.4320 19 6 -2.8661 -9.3733 0.1649 20 9 -3.9412 -9.6434 1.0183 21 6 0.8603 -3.0033 -1.3996 22 1 -0.4850 0.8401 -0.0004 23 1 -0.3711 -1.7546 0.9565 24 1 2.1875 -4.2514 0.9635 25 1 3.1373 -3.5677 -0.4239 26 1 -1.4454 -5.5296 -0.4135 27 1 -0.3178 -6.1760 0.8026 28 1 -0.3722 -8.3857 -0.3203 29 1 -1.4998 -7.7399 -1.5368 30 1 -2.0154 -7.8841 1.4681 31 1 -3.1425 -7.2384 0.2511 32 1 -3.1961 -9.4493 -0.8711 33 1 -2.0688 -10.0943 0.3461 34 1 1.5092 -2.6305 -2.1921 35 1 -0.1983 -2.8791 -1.6275 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344703183.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:41 Heat of formation + Delta-G solvation = -171.129282 kcal Electronic energy + Delta-G solvation = -20451.574686 eV Core-core repulsion = 16912.230122 eV Total energy + Delta-G solvation = -3539.344564 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.093 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.57186 -40.31816 -38.18529 -37.09219 -36.56674 -35.78243 -34.04874 -30.88657 -29.61389 -26.73940 -26.52551 -24.97486 -22.52293 -21.33939 -19.81181 -19.31084 -18.25031 -17.63476 -17.51984 -17.20594 -16.89437 -16.71264 -15.99554 -15.79345 -15.72495 -15.38365 -14.92527 -14.68523 -13.87100 -13.78591 -13.67181 -13.39583 -13.29947 -13.27281 -13.23198 -13.18008 -12.79349 -12.49272 -12.21482 -12.18023 -12.11601 -12.08731 -11.57966 -11.54668 -11.05470 -10.62494 -10.22607 -9.77091 -8.23529 -6.38981 -0.78793 1.47983 1.51354 1.59311 1.62870 2.42584 2.81106 2.94625 3.05750 3.36119 3.67044 3.70230 3.75564 3.98303 4.10725 4.19582 4.31396 4.43137 4.45404 4.52138 4.67462 4.72401 4.76394 4.87487 4.97069 4.99216 5.06252 5.20552 5.27534 5.73264 5.86003 6.01539 6.67329 7.34181 7.55373 8.81936 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.027496 B = 0.004146 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.098248 B = 6751.332600 C = 7370.363869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.031 3.969 3 Si 0.966 3.034 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.553 4.553 8 H 0.073 0.927 9 C 0.218 3.782 10 O -0.579 6.579 11 C 0.137 3.863 12 N -1.047 6.047 13 S 2.636 3.364 14 O -0.988 6.988 15 O -0.993 6.993 16 C -0.602 4.602 17 C -0.117 4.117 18 C -0.143 4.143 19 C 0.053 3.947 20 F -0.237 7.237 21 C 0.108 3.892 22 H 0.275 0.725 23 H 0.388 0.612 24 H 0.076 0.924 25 H 0.093 0.907 26 H 0.142 0.858 27 H 0.146 0.854 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.604 -11.844 0.360 12.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.169 4.169 3 Si 0.792 3.208 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.592 4.592 8 H 0.091 0.909 9 C 0.175 3.825 10 O -0.391 6.391 11 C 0.011 3.989 12 N -0.885 5.885 13 S 2.737 3.263 14 O -0.979 6.979 15 O -0.984 6.984 16 C -0.735 4.735 17 C -0.156 4.156 18 C -0.182 4.182 19 C -0.002 4.002 20 F -0.218 7.218 21 C -0.019 4.019 22 H 0.085 0.915 23 H 0.244 0.756 24 H 0.094 0.906 25 H 0.111 0.889 26 H 0.160 0.840 27 H 0.165 0.835 28 H 0.113 0.887 29 H 0.110 0.890 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.094 0.906 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.158 -13.085 -0.234 13.462 hybrid contribution -0.421 1.750 0.238 1.816 sum -3.579 -11.335 0.004 11.886 Atomic orbital electron populations 1.69324 1.07075 1.28773 1.50820 1.25736 0.95748 1.02547 0.92861 0.85423 0.78644 0.78551 0.78197 1.20194 1.20891 1.19328 1.21817 0.94321 0.91122 1.51954 0.90890 1.19997 0.85662 0.91832 0.85014 1.85955 1.45543 1.48090 1.59548 1.22763 0.93115 0.91521 0.91468 1.59679 1.54901 1.20245 1.53717 1.03965 0.76368 0.71019 0.74939 1.93510 1.50045 1.68596 1.85755 1.93509 1.84317 1.85700 1.34838 1.30418 1.18670 1.06986 1.17433 1.21378 0.99938 0.92164 1.02157 1.22088 0.97938 0.97279 1.00934 1.22246 0.86859 0.97252 0.93841 1.92731 1.59647 1.95213 1.74215 1.23451 0.99505 0.77767 1.01133 0.91505 0.75618 0.90581 0.88918 0.84010 0.83543 0.88660 0.88971 0.90111 0.90343 0.88811 0.88651 0.90647 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -45.67 11.01 21.45 0.24 -45.44 16 2 C 0.03 1.51 5.39 84.66 0.46 1.97 16 3 Si 0.97 39.02 29.54 68.60 2.03 41.04 16 4 H -0.28 -11.03 7.11 99.48 0.71 -10.33 16 5 H -0.28 -11.32 7.11 99.48 0.71 -10.62 16 6 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 7 C -0.55 -27.02 8.70 25.60 0.22 -26.80 16 8 H 0.07 3.45 7.81 -2.91 -0.02 3.43 16 9 C 0.22 9.97 1.58 -11.12 -0.02 9.95 16 10 O -0.58 -27.47 13.55 -148.98 -2.02 -29.49 16 11 C 0.14 5.39 8.10 83.18 0.67 6.07 16 12 N -1.05 -40.08 4.10 -549.90 -2.25 -42.33 16 13 S 2.64 87.14 5.96 -56.49 -0.34 86.80 16 14 O -0.99 -36.53 18.07 -127.65 -2.31 -38.84 16 15 O -0.99 -38.16 18.07 -127.65 -2.31 -40.46 16 16 C -0.60 -14.39 6.18 71.98 0.44 -13.95 16 17 C -0.12 -2.15 5.22 30.60 0.16 -1.99 16 18 C -0.14 -2.36 5.67 30.60 0.17 -2.19 16 19 C 0.05 0.75 7.55 71.98 0.54 1.29 16 20 F -0.24 -4.89 17.36 44.97 0.78 -4.11 16 21 C 0.11 4.62 8.13 83.27 0.68 5.30 16 22 H 0.28 12.99 8.31 -92.70 -0.77 12.22 16 23 H 0.39 19.25 6.32 -74.06 -0.47 18.78 16 24 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 25 H 0.09 3.45 8.10 -2.39 -0.02 3.43 16 26 H 0.14 3.30 8.14 -2.39 -0.02 3.28 16 27 H 0.15 3.25 8.14 -2.39 -0.02 3.23 16 28 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.08 3.22 8.10 -2.39 -0.02 3.20 16 35 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -61.57 315.56 -2.22 -63.79 By element: Atomic # 1 Polarization: 28.76 SS G_CDS: 0.63 Total: 29.39 kcal Atomic # 6 Polarization: -23.68 SS G_CDS: 3.33 Total: -20.35 kcal Atomic # 7 Polarization: -85.75 SS G_CDS: -2.02 Total: -87.77 kcal Atomic # 8 Polarization: -102.16 SS G_CDS: -6.63 Total: -108.79 kcal Atomic # 9 Polarization: -4.89 SS G_CDS: 0.78 Total: -4.11 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.04 kcal Atomic # 16 Polarization: 87.14 SS G_CDS: -0.34 Total: 86.80 kcal Total: -61.57 -2.22 -63.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344703183.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.337 kcal (2) G-P(sol) polarization free energy of solvation -61.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds