Wall clock time and date at job start Wed Apr 15 2020 11:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00468 * 2 1 4 4 H 1.48498 * 109.47524 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46970 * 299.99957 * 3 2 1 6 6 H 1.48502 * 109.47162 * 59.99546 * 3 2 1 7 7 C 1.37875 * 119.99829 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00164 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00240 * 0.02562 * 7 2 1 10 10 O 1.42903 * 110.63538 * 298.31185 * 9 7 2 11 11 C 1.55156 * 110.71965 * 61.44641 * 9 7 2 12 12 C 1.54906 * 101.61451 * 153.84937 * 11 9 7 13 13 N 1.47471 * 104.81210 * 323.04512 * 12 11 9 14 14 S 1.65598 * 125.62816 * 204.06537 * 13 12 11 15 15 O 1.42104 * 104.27651 * 26.07690 * 14 13 12 16 16 O 1.42097 * 104.27618 * 153.92925 * 14 13 12 17 17 C 1.81398 * 104.45183 * 270.00176 * 14 13 12 18 18 C 1.53002 * 109.46904 * 179.97438 * 17 14 13 19 19 C 1.53001 * 109.47100 * 180.02562 * 18 17 14 20 20 F 1.39896 * 109.47143 * 180.02562 * 19 18 17 21 21 C 1.47017 * 108.71970 * 24.07007 * 13 12 11 22 22 H 0.97005 * 119.99288 * 0.02562 * 1 2 3 23 23 H 0.96698 * 114.00549 * 61.68763 * 10 9 7 24 24 H 1.09002 * 111.00677 * 271.94521 * 11 9 7 25 25 H 1.09002 * 111.00564 * 35.75779 * 11 9 7 26 26 H 1.09008 * 110.36753 * 81.85112 * 12 11 9 27 27 H 1.09001 * 110.37094 * 204.16995 * 12 11 9 28 28 H 1.08998 * 109.46798 * 299.99699 * 17 14 13 29 29 H 1.08998 * 109.46860 * 60.00368 * 17 14 13 30 30 H 1.08997 * 109.47571 * 299.99840 * 18 17 14 31 31 H 1.08998 * 109.47049 * 60.00499 * 18 17 14 32 32 H 1.09002 * 109.47225 * 300.00265 * 19 18 17 33 33 H 1.08995 * 109.47267 * 59.99755 * 19 18 17 34 34 H 1.08998 * 109.88206 * 239.55467 * 21 13 12 35 35 H 1.09007 * 109.88177 * 118.39340 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 0.4494 -2.6180 1.1776 11 6 0.3763 -2.6281 -1.2745 12 6 0.2717 -4.1661 -1.4268 13 7 1.5929 -4.6763 -1.0159 14 16 2.2564 -6.1205 -1.4810 15 8 1.6420 -6.4022 -2.7310 16 8 3.6583 -5.9091 -1.3850 17 6 1.7027 -7.3004 -0.2193 18 6 2.2569 -8.6895 -0.5418 19 6 1.7894 -9.6848 0.5220 20 9 2.2966 -10.9548 0.2274 21 6 2.2231 -3.6910 -0.1253 22 1 -0.4849 0.8401 -0.0004 23 1 -0.2287 -1.9338 1.2625 24 1 -0.6067 -2.1829 -1.1206 25 1 0.8738 -2.1831 -2.1362 26 1 -0.5068 -4.5599 -0.7732 27 1 0.0674 -4.4316 -2.4640 28 1 2.0642 -6.9827 0.7587 29 1 0.6134 -7.3374 -0.2097 30 1 1.8952 -9.0070 -1.5198 31 1 3.3463 -8.6528 -0.5517 32 1 2.1508 -9.3676 1.5002 33 1 0.7001 -9.7214 0.5316 34 1 3.1677 -3.3553 -0.5532 35 1 2.3950 -4.1344 0.8556 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592077346.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:50 Heat of formation + Delta-G solvation = -179.151671 kcal Electronic energy + Delta-G solvation = -20823.401473 eV Core-core repulsion = 17283.709032 eV Total energy + Delta-G solvation = -3539.692441 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.093 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -47.87441 -38.10579 -36.92305 -35.77301 -34.69083 -34.33759 -32.23058 -29.21287 -28.33038 -27.17478 -24.87219 -22.50128 -21.54007 -19.84717 -18.61972 -17.61709 -16.94238 -16.82413 -16.71818 -15.73941 -15.60226 -15.09717 -14.97122 -14.60295 -14.21623 -14.14204 -13.31765 -13.06064 -12.64599 -12.19842 -12.12681 -12.04577 -11.92888 -11.87188 -11.85423 -11.65217 -11.35575 -11.10326 -11.03773 -10.88331 -10.64129 -10.46828 -10.40807 -10.12713 -9.37464 -8.69206 -8.45208 -8.22644 -6.30092 -4.37358 0.36412 2.88248 3.18403 3.27656 3.32591 3.88310 4.14872 4.25656 4.26905 4.38072 4.43259 4.72905 4.85784 4.98213 5.19901 5.29748 5.38835 5.40427 5.70511 5.78168 5.95510 5.97254 6.17663 6.29358 6.62217 6.74263 6.91972 6.98442 7.33931 7.37132 7.72464 8.01329 8.65435 9.27826 9.36721 10.77442 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.035804 B = 0.004238 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.853261 B = 6604.977169 C = 6693.158910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.902 3.098 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.536 4.536 8 H 0.066 0.934 9 C 0.249 3.751 10 O -0.587 6.587 11 C -0.129 4.129 12 C 0.112 3.888 13 N -1.007 6.007 14 S 2.629 3.371 15 O -0.958 6.958 16 O -0.953 6.953 17 C -0.640 4.640 18 C -0.145 4.145 19 C 0.070 3.930 20 F -0.218 7.218 21 C 0.135 3.865 22 H 0.267 0.733 23 H 0.382 0.618 24 H 0.086 0.914 25 H 0.067 0.933 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.136 0.864 29 H 0.134 0.866 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.538 -12.616 0.665 12.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.574 4.574 8 H 0.084 0.916 9 C 0.208 3.792 10 O -0.396 6.396 11 C -0.169 4.169 12 C -0.012 4.012 13 N -0.846 5.846 14 S 2.722 3.278 15 O -0.948 6.948 16 O -0.944 6.944 17 C -0.767 4.767 18 C -0.185 4.185 19 C 0.014 3.986 20 F -0.199 7.199 21 C 0.011 3.989 22 H 0.077 0.923 23 H 0.233 0.767 24 H 0.105 0.895 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.154 0.846 29 H 0.153 0.847 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.288 -13.281 -0.014 13.284 hybrid contribution -0.396 1.241 0.567 1.420 sum -0.108 -12.040 0.552 12.054 Atomic orbital electron populations 1.69706 1.05954 1.27506 1.50366 1.24987 0.95028 0.99537 0.93494 0.86371 0.80217 0.82761 0.77671 1.19565 1.20852 1.20824 1.21600 0.93798 0.90291 1.51726 0.91625 1.19474 0.86903 0.90597 0.82245 1.86086 1.51855 1.56572 1.45117 1.23268 1.02595 0.90252 1.00808 1.22215 0.82606 0.97851 0.98563 1.58481 1.30002 1.32711 1.63411 1.04407 0.74203 0.73727 0.75502 1.93566 1.78276 1.84780 1.38185 1.93581 1.29551 1.84031 1.87209 1.30722 1.12740 1.11860 1.21403 1.21862 1.02922 0.92425 1.01242 1.21948 0.99632 0.78024 0.98972 1.92772 1.89497 1.42568 1.95089 1.21870 0.96799 0.88917 0.91342 0.92299 0.76727 0.89536 0.91421 0.92507 0.91338 0.84578 0.84741 0.89215 0.89150 0.90158 0.90218 0.90452 0.92544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.52 10.67 55.43 0.59 -21.93 16 2 C 0.07 1.81 5.28 -17.82 -0.09 1.72 16 3 Si 0.90 19.95 29.54 -169.99 -5.02 14.93 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.54 -13.65 8.21 -34.44 -0.28 -13.93 16 8 H 0.07 1.68 7.57 -52.48 -0.40 1.28 16 9 C 0.25 5.74 0.85 -89.94 -0.08 5.67 16 10 O -0.59 -13.80 13.08 -35.23 -0.46 -14.26 16 11 C -0.13 -2.76 5.46 -24.58 -0.13 -2.90 16 12 C 0.11 2.01 7.07 -2.50 -0.02 1.99 16 13 N -1.01 -17.87 3.62 -111.39 -0.40 -18.27 16 14 S 2.63 40.44 5.65 -107.50 -0.61 39.83 16 15 O -0.96 -16.81 17.28 -57.54 -0.99 -17.80 16 16 O -0.95 -17.37 17.60 -57.54 -1.01 -18.38 16 17 C -0.64 -6.74 6.18 37.16 0.23 -6.51 16 18 C -0.15 -1.42 5.68 -26.73 -0.15 -1.58 16 19 C 0.07 0.60 7.55 37.16 0.28 0.88 16 20 F -0.22 -2.40 17.36 2.25 0.04 -2.36 16 21 C 0.14 2.75 6.25 -3.07 -0.02 2.73 16 22 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 23 H 0.38 9.11 7.46 45.56 0.34 9.45 16 24 H 0.09 1.90 7.54 -51.93 -0.39 1.51 16 25 H 0.07 1.51 8.04 -51.93 -0.42 1.09 16 26 H 0.06 0.92 8.14 -51.92 -0.42 0.49 16 27 H 0.07 1.15 7.67 -51.93 -0.40 0.75 16 28 H 0.14 1.27 8.14 -51.93 -0.42 0.84 16 29 H 0.13 1.18 8.14 -51.92 -0.42 0.76 16 30 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.08 1.62 7.66 -51.93 -0.40 1.22 16 35 H 0.06 1.07 8.07 -51.93 -0.42 0.65 16 LS Contribution 307.96 15.07 4.64 4.64 Total: -1.00 -29.87 307.96 -7.67 -37.54 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -4.18 Total: 7.99 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: -0.27 Total: -11.92 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.19 Total: -40.20 kcal Atomic # 8 Polarization: -47.98 SS G_CDS: -2.47 Total: -50.45 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.04 Total: -2.36 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Atomic # 16 Polarization: 40.44 SS G_CDS: -0.61 Total: 39.83 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.87 -7.67 -37.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592077346.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.615 kcal (2) G-P(sol) polarization free energy of solvation -29.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds