Wall clock time and date at job start Wed Apr 15 2020 11:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00468 * 2 1 4 4 H 1.48498 * 109.47524 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46970 * 299.99957 * 3 2 1 6 6 H 1.48502 * 109.47162 * 59.99546 * 3 2 1 7 7 C 1.37875 * 119.99829 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00164 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00240 * 0.02562 * 7 2 1 10 10 O 1.42903 * 110.63538 * 298.31185 * 9 7 2 11 11 C 1.55156 * 110.71965 * 61.44641 * 9 7 2 12 12 C 1.54906 * 101.61451 * 153.84937 * 11 9 7 13 13 N 1.47471 * 104.81210 * 323.04512 * 12 11 9 14 14 S 1.65598 * 125.62816 * 204.06537 * 13 12 11 15 15 O 1.42104 * 104.27651 * 26.07690 * 14 13 12 16 16 O 1.42097 * 104.27618 * 153.92925 * 14 13 12 17 17 C 1.81398 * 104.45183 * 270.00176 * 14 13 12 18 18 C 1.53002 * 109.46904 * 179.97438 * 17 14 13 19 19 C 1.53001 * 109.47100 * 180.02562 * 18 17 14 20 20 F 1.39896 * 109.47143 * 180.02562 * 19 18 17 21 21 C 1.47017 * 108.71970 * 24.07007 * 13 12 11 22 22 H 0.97005 * 119.99288 * 0.02562 * 1 2 3 23 23 H 0.96698 * 114.00549 * 61.68763 * 10 9 7 24 24 H 1.09002 * 111.00677 * 271.94521 * 11 9 7 25 25 H 1.09002 * 111.00564 * 35.75779 * 11 9 7 26 26 H 1.09008 * 110.36753 * 81.85112 * 12 11 9 27 27 H 1.09001 * 110.37094 * 204.16995 * 12 11 9 28 28 H 1.08998 * 109.46798 * 299.99699 * 17 14 13 29 29 H 1.08998 * 109.46860 * 60.00368 * 17 14 13 30 30 H 1.08997 * 109.47571 * 299.99840 * 18 17 14 31 31 H 1.08998 * 109.47049 * 60.00499 * 18 17 14 32 32 H 1.09002 * 109.47225 * 300.00265 * 19 18 17 33 33 H 1.08995 * 109.47267 * 59.99755 * 19 18 17 34 34 H 1.08998 * 109.88206 * 239.55467 * 21 13 12 35 35 H 1.09007 * 109.88177 * 118.39340 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 0.4494 -2.6180 1.1776 11 6 0.3763 -2.6281 -1.2745 12 6 0.2717 -4.1661 -1.4268 13 7 1.5929 -4.6763 -1.0159 14 16 2.2564 -6.1205 -1.4810 15 8 1.6420 -6.4022 -2.7310 16 8 3.6583 -5.9091 -1.3850 17 6 1.7027 -7.3004 -0.2193 18 6 2.2569 -8.6895 -0.5418 19 6 1.7894 -9.6848 0.5220 20 9 2.2966 -10.9548 0.2274 21 6 2.2231 -3.6910 -0.1253 22 1 -0.4849 0.8401 -0.0004 23 1 -0.2287 -1.9338 1.2625 24 1 -0.6067 -2.1829 -1.1206 25 1 0.8738 -2.1831 -2.1362 26 1 -0.5068 -4.5599 -0.7732 27 1 0.0674 -4.4316 -2.4640 28 1 2.0642 -6.9827 0.7587 29 1 0.6134 -7.3374 -0.2097 30 1 1.8952 -9.0070 -1.5198 31 1 3.3463 -8.6528 -0.5517 32 1 2.1508 -9.3676 1.5002 33 1 0.7001 -9.7214 0.5316 34 1 3.1677 -3.3553 -0.5532 35 1 2.3950 -4.1344 0.8556 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592077346.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:50 Heat of formation + Delta-G solvation = -202.279607 kcal Electronic energy + Delta-G solvation = -20824.404376 eV Core-core repulsion = 17283.709032 eV Total energy + Delta-G solvation = -3540.695343 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.093 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.60635 -39.74125 -38.23601 -37.08251 -36.03405 -35.48324 -34.14900 -30.83449 -29.97507 -27.97508 -26.68475 -23.45356 -22.84742 -21.58078 -19.92330 -19.21018 -18.51979 -17.82203 -17.59297 -16.91122 -16.87262 -16.47492 -16.15340 -16.01609 -15.72718 -15.10356 -14.96162 -14.54097 -13.91788 -13.67831 -13.47245 -13.37518 -13.29241 -13.21348 -13.09272 -12.81075 -12.77818 -12.69405 -12.61746 -12.23870 -12.14688 -11.92921 -11.66816 -11.57649 -11.14459 -10.59732 -10.07062 -9.85243 -8.21453 -6.34798 -0.82570 1.41109 1.45844 1.55006 1.61227 2.40870 2.80387 3.00723 3.08583 3.36186 3.64192 3.67535 3.78755 4.06493 4.14336 4.15852 4.32844 4.46924 4.49096 4.60608 4.64464 4.69820 4.74484 5.01238 5.01422 5.22393 5.28918 5.37632 5.58540 5.59443 5.82220 6.14446 6.69447 7.35754 7.45245 8.84244 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.035804 B = 0.004238 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.853261 B = 6604.977169 C = 6693.158910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.036 3.964 3 Si 0.955 3.045 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.277 1.277 7 C -0.563 4.563 8 H 0.054 0.946 9 C 0.235 3.765 10 O -0.587 6.587 11 C -0.127 4.127 12 C 0.118 3.882 13 N -1.013 6.013 14 S 2.626 3.374 15 O -0.984 6.984 16 O -0.990 6.990 17 C -0.604 4.604 18 C -0.156 4.156 19 C 0.067 3.933 20 F -0.234 7.234 21 C 0.140 3.860 22 H 0.270 0.730 23 H 0.378 0.622 24 H 0.075 0.925 25 H 0.046 0.954 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.159 0.841 29 H 0.165 0.835 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.061 0.939 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.211 -13.986 1.612 14.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.165 4.165 3 Si 0.781 3.219 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.203 1.203 7 C -0.601 4.601 8 H 0.072 0.928 9 C 0.194 3.806 10 O -0.395 6.395 11 C -0.167 4.167 12 C -0.006 4.006 13 N -0.851 5.851 14 S 2.725 3.275 15 O -0.975 6.975 16 O -0.981 6.981 17 C -0.737 4.737 18 C -0.196 4.196 19 C 0.011 3.989 20 F -0.215 7.215 21 C 0.015 3.985 22 H 0.079 0.921 23 H 0.228 0.772 24 H 0.094 0.906 25 H 0.064 0.936 26 H 0.100 0.900 27 H 0.097 0.903 28 H 0.177 0.823 29 H 0.183 0.817 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.079 0.921 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.374 -14.609 0.888 14.640 hybrid contribution -0.184 1.593 0.284 1.629 sum -0.558 -13.015 1.172 13.080 Atomic orbital electron populations 1.69764 1.06498 1.28114 1.50177 1.25570 0.95839 1.01863 0.93256 0.85558 0.78917 0.79716 0.77688 1.19944 1.20620 1.20309 1.21884 0.93616 0.92110 1.52538 0.92815 1.19602 0.87497 0.90873 0.82620 1.86066 1.51716 1.56224 1.45492 1.23086 1.01298 0.93077 0.99208 1.22161 0.83410 0.95148 0.99922 1.58425 1.29604 1.33800 1.63234 1.04353 0.73203 0.73819 0.76088 1.93529 1.78271 1.84908 1.40818 1.93535 1.31857 1.84760 1.87935 1.30359 1.14582 1.09653 1.19118 1.22011 1.03122 0.92151 1.02268 1.22128 1.01024 0.76706 0.99031 1.92744 1.89851 1.43661 1.95232 1.21603 0.95542 0.88898 0.92446 0.92095 0.77235 0.90640 0.93551 0.90043 0.90323 0.82336 0.81733 0.88905 0.89269 0.88286 0.87958 0.92115 0.91051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.70 10.67 21.45 0.23 -45.47 16 2 C 0.04 1.82 5.28 84.65 0.45 2.27 16 3 Si 0.95 41.09 29.54 68.60 2.03 43.12 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 5 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 7 C -0.56 -29.17 8.21 25.60 0.21 -28.96 16 8 H 0.05 2.82 7.57 -2.91 -0.02 2.80 16 9 C 0.23 10.87 0.85 -10.35 -0.01 10.87 16 10 O -0.59 -27.26 13.08 -148.98 -1.95 -29.21 16 11 C -0.13 -5.45 5.46 31.98 0.17 -5.28 16 12 C 0.12 4.07 7.07 86.85 0.61 4.68 16 13 N -1.01 -34.75 3.62 -506.33 -1.83 -36.58 16 14 S 2.63 76.86 5.65 -56.49 -0.32 76.54 16 15 O -0.98 -33.45 17.28 -127.65 -2.21 -35.65 16 16 O -0.99 -35.75 17.60 -127.65 -2.25 -37.99 16 17 C -0.60 -10.33 6.18 71.98 0.44 -9.88 16 18 C -0.16 -2.54 5.68 30.60 0.17 -2.36 16 19 C 0.07 0.88 7.55 71.98 0.54 1.42 16 20 F -0.23 -4.52 17.36 44.97 0.78 -3.74 16 21 C 0.14 5.67 6.25 86.73 0.54 6.22 16 22 H 0.27 12.97 8.31 -92.70 -0.77 12.20 16 23 H 0.38 18.02 7.46 -74.06 -0.55 17.47 16 24 H 0.08 3.35 7.54 -2.39 -0.02 3.34 16 25 H 0.05 2.13 8.04 -2.39 -0.02 2.11 16 26 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 27 H 0.08 2.53 7.67 -2.39 -0.02 2.51 16 28 H 0.16 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.16 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.09 1.48 8.14 -2.39 -0.02 1.47 16 32 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.06 2.61 7.66 -2.39 -0.02 2.59 16 35 H 0.07 2.62 8.07 -2.38 -0.02 2.60 16 Total: -1.00 -64.62 307.96 -1.83 -66.45 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: 0.55 Total: 23.57 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: 3.14 Total: -21.03 kcal Atomic # 7 Polarization: -80.44 SS G_CDS: -1.61 Total: -82.05 kcal Atomic # 8 Polarization: -96.46 SS G_CDS: -6.40 Total: -102.86 kcal Atomic # 9 Polarization: -4.52 SS G_CDS: 0.78 Total: -3.74 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.12 kcal Atomic # 16 Polarization: 76.86 SS G_CDS: -0.32 Total: 76.54 kcal Total: -64.62 -1.83 -66.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592077346.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.827 kcal (2) G-P(sol) polarization free energy of solvation -64.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds