Wall clock time and date at job start Wed Apr 15 2020 11:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37979 * 120.05068 * 2 1 4 4 C 1.38304 * 120.17500 * 180.24980 * 3 2 1 5 5 C 1.38606 * 120.28292 * 359.48960 * 4 3 2 6 6 F 1.35098 * 119.95527 * 180.24986 * 5 4 3 7 7 C 1.38159 * 120.09527 * 0.27852 * 5 4 3 8 8 C 1.39603 * 120.05126 * 179.76630 * 2 1 3 9 9 C 1.47737 * 120.13522 * 359.97438 * 8 2 1 10 10 O 1.21472 * 120.00402 * 353.79341 * 9 8 2 11 11 O 1.34716 * 119.99931 * 173.78999 * 9 8 2 12 12 C 1.45200 * 116.99902 * 180.02562 * 11 9 8 13 13 C 1.50706 * 109.46911 * 180.02562 * 12 11 9 14 14 O 1.21293 * 120.00094 * 359.97438 * 13 12 11 15 15 N 1.34774 * 119.99676 * 179.97438 * 13 12 11 16 16 C 1.37098 * 119.99696 * 179.97438 * 15 13 12 17 17 H 1.08005 * 119.99956 * 359.97438 * 16 15 13 18 18 C 1.38945 * 120.00073 * 180.02562 * 16 15 13 19 19 N 1.31415 * 120.00534 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 120.00091 * 359.97438 * 18 16 15 21 21 H 1.48507 * 109.47055 * 90.00144 * 20 18 16 22 22 H 1.48499 * 109.47436 * 210.00451 * 20 18 16 23 23 H 1.48498 * 109.46977 * 330.00516 * 20 18 16 24 24 H 1.08998 * 109.46801 * 263.64803 * 1 2 3 25 25 H 1.08998 * 109.47040 * 23.65284 * 1 2 3 26 26 H 1.09005 * 109.47173 * 143.64754 * 1 2 3 27 27 H 1.07996 * 119.91124 * 0.02562 * 3 2 1 28 28 H 1.07998 * 119.85861 * 179.76354 * 4 3 2 29 29 H 1.07992 * 120.09049 * 179.97438 * 7 5 4 30 30 H 1.09000 * 109.47127 * 299.99654 * 12 11 9 31 31 H 1.08992 * 109.47498 * 60.00049 * 12 11 9 32 32 H 0.96998 * 119.99969 * 359.97438 * 15 13 12 33 33 H 0.96994 * 120.00325 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1943 0.0000 4 6 3.5810 1.1973 -0.0052 5 6 4.2826 0.0020 0.0002 6 9 5.6335 0.0126 0.0002 7 6 3.6023 -1.2006 0.0050 8 6 2.2061 -1.2084 0.0049 9 6 1.4716 -2.4902 0.0107 10 8 0.2623 -2.4968 0.1250 11 8 2.1430 -3.6518 -0.1107 12 6 1.3565 -4.8722 -0.0975 13 6 2.2714 -6.0610 -0.2427 14 8 3.4684 -5.8958 -0.3475 15 7 1.7594 -7.3076 -0.2561 16 6 2.5916 -8.3890 -0.3887 17 1 3.6574 -8.2419 -0.4828 18 6 2.0638 -9.6742 -0.4030 19 7 2.8615 -10.7109 -0.5296 20 14 0.2203 -9.9288 -0.2409 21 1 -0.4003 -9.9265 -1.5901 22 1 -0.0433 -11.2307 0.4230 23 1 -0.3612 -8.8313 0.5732 24 1 -0.3633 -0.1137 1.0214 25 1 -0.3633 0.9413 -0.4123 26 1 -0.3634 -0.8277 -0.6092 27 1 1.6574 2.1292 0.0004 28 1 4.1166 2.1351 -0.0091 29 1 4.1490 -2.1319 0.0088 30 1 0.8140 -4.9447 0.8451 31 1 0.6470 -4.8563 -0.9247 32 1 0.8021 -7.4397 -0.1719 33 1 2.4930 -11.6081 -0.5392 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731241220.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:00 Heat of formation + Delta-G solvation = -133.391440 kcal Electronic energy + Delta-G solvation = -20819.826143 eV Core-core repulsion = 17146.674063 eV Total energy + Delta-G solvation = -3673.152080 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.07803 -40.79563 -39.10076 -38.20450 -36.31015 -34.08421 -32.59645 -31.98939 -31.78461 -28.72407 -27.05616 -24.91452 -24.08801 -22.24065 -20.99320 -19.66860 -18.65043 -18.37241 -17.33708 -16.57989 -16.33794 -16.13882 -15.77978 -15.75842 -15.35897 -14.86310 -14.43683 -14.14392 -13.74511 -13.68618 -13.55747 -12.97928 -12.54473 -12.39765 -12.32998 -12.19437 -12.03674 -11.98848 -11.71289 -11.27749 -10.66476 -10.58306 -10.24209 -10.05874 -9.69166 -9.51533 -8.86689 -8.69179 -8.30760 -6.40314 -3.93443 0.31096 0.83372 2.31991 2.48637 2.97625 3.02317 3.11202 3.30776 3.53659 3.88921 4.02662 4.23233 4.39541 4.55436 4.59073 4.79028 4.94433 5.09685 5.24229 5.35556 5.43297 5.51287 5.52821 5.59838 5.64406 5.66083 5.79867 5.94023 6.11896 6.42060 6.52766 7.42989 7.69102 7.99379 8.46262 8.82411 9.28416 9.63703 10.71936 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.028472 B = 0.003584 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.190699 B = 7809.542648 C = 8767.576405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.029 4.029 3 C -0.109 4.109 4 C -0.116 4.116 5 C 0.080 3.920 6 F -0.134 7.134 7 C -0.088 4.088 8 C -0.098 4.098 9 C 0.506 3.494 10 O -0.501 6.501 11 O -0.319 6.319 12 C 0.059 3.941 13 C 0.447 3.553 14 O -0.557 6.557 15 N -0.578 5.578 16 C -0.309 4.309 17 H 0.122 0.878 18 C 0.045 3.955 19 N -0.874 5.874 20 Si 0.879 3.121 21 H -0.269 1.269 22 H -0.274 1.274 23 H -0.268 1.268 24 H 0.080 0.920 25 H 0.063 0.937 26 H 0.096 0.904 27 H 0.142 0.858 28 H 0.141 0.859 29 H 0.158 0.842 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.373 0.627 33 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.918 22.802 1.429 23.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.030 4.030 3 C -0.127 4.127 4 C -0.135 4.135 5 C 0.060 3.940 6 F -0.113 7.113 7 C -0.107 4.107 8 C -0.099 4.099 9 C 0.351 3.649 10 O -0.392 6.392 11 O -0.233 6.233 12 C -0.018 4.018 13 C 0.232 3.768 14 O -0.438 6.438 15 N -0.219 5.219 16 C -0.437 4.437 17 H 0.140 0.860 18 C -0.159 4.159 19 N -0.514 5.514 20 Si 0.705 3.295 21 H -0.194 1.194 22 H -0.199 1.199 23 H -0.193 1.193 24 H 0.098 0.902 25 H 0.082 0.918 26 H 0.114 0.886 27 H 0.160 0.840 28 H 0.159 0.841 29 H 0.176 0.824 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.206 0.794 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.362 22.612 1.372 23.279 hybrid contribution -1.228 -0.507 0.163 1.339 sum -6.591 22.105 1.536 23.117 Atomic orbital electron populations 1.21137 0.89312 1.03520 1.04001 1.20119 0.97402 0.90990 0.94485 1.20856 0.92968 0.97800 1.01047 1.21412 0.94978 0.97429 0.99682 1.17526 0.77390 0.94143 1.04898 1.91540 1.28393 1.97332 1.94011 1.21632 0.93753 0.98781 0.96533 1.18761 0.92507 0.90533 1.08089 1.21043 0.85845 0.84668 0.73335 1.90782 1.14713 1.87787 1.45869 1.86603 1.40427 1.13880 1.82432 1.22790 0.93601 0.81738 1.03702 1.19172 0.88864 0.83154 0.85637 1.90609 1.15076 1.84804 1.53360 1.42024 1.08716 1.05271 1.65844 1.19428 0.93702 0.82617 1.47946 0.85993 1.25039 0.98519 0.95072 0.97237 1.69612 1.35055 0.98688 1.48011 0.86676 0.84828 0.78901 0.79078 1.19391 1.19939 1.19343 0.90176 0.91812 0.88581 0.84027 0.84081 0.82389 0.89216 0.89204 0.79371 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 8.73 36.01 0.31 -0.82 16 2 C -0.03 -0.30 5.91 -104.21 -0.62 -0.92 16 3 C -0.11 -0.86 9.66 -39.65 -0.38 -1.24 16 4 C -0.12 -0.98 10.02 -39.42 -0.39 -1.37 16 5 C 0.08 0.88 7.29 -39.47 -0.29 0.60 16 6 F -0.13 -1.62 17.26 2.25 0.04 -1.58 16 7 C -0.09 -1.11 9.59 -39.09 -0.38 -1.48 16 8 C -0.10 -1.25 5.87 -104.99 -0.62 -1.86 16 9 C 0.51 7.65 7.83 34.61 0.27 7.92 16 10 O -0.50 -7.73 13.13 -19.24 -0.25 -7.98 16 11 O -0.32 -5.63 9.03 -47.21 -0.43 -6.05 16 12 C 0.06 1.04 5.95 36.01 0.21 1.25 16 13 C 0.45 10.21 7.86 -10.98 -0.09 10.13 16 14 O -0.56 -15.15 16.08 -14.11 -0.23 -15.38 16 15 N -0.58 -13.58 5.09 -10.96 -0.06 -13.64 16 16 C -0.31 -8.59 10.16 -14.93 -0.15 -8.74 16 17 H 0.12 3.87 7.39 -52.48 -0.39 3.49 16 18 C 0.05 1.22 5.50 -17.47 -0.10 1.12 16 19 N -0.87 -25.05 13.96 55.50 0.77 -24.27 16 20 Si 0.88 18.88 27.74 -169.99 -4.71 14.16 16 21 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 22 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 23 H -0.27 -5.23 6.52 56.52 0.37 -4.86 16 24 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.42 8.04 -51.93 -0.42 0.01 16 26 H 0.10 1.07 5.86 -51.93 -0.30 0.77 16 27 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 28 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 29 H 0.16 2.15 7.63 -52.49 -0.40 1.75 16 30 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.37 7.58 5.76 -40.82 -0.24 7.35 16 33 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 300.91 15.07 4.53 4.53 Total: -1.00 -32.53 300.91 -5.56 -38.09 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -3.03 Total: 7.54 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: -2.21 Total: 4.57 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: 0.72 Total: -37.91 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -0.91 Total: -29.41 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -4.71 Total: 14.16 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.53 -5.56 -38.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731241220.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.297 kcal (2) G-P(sol) polarization free energy of solvation -32.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds