Wall clock time and date at job start Wed Apr 15 2020 11:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37979 * 120.05068 * 2 1 4 4 C 1.38304 * 120.17500 * 180.24980 * 3 2 1 5 5 C 1.38606 * 120.28292 * 359.48960 * 4 3 2 6 6 F 1.35098 * 119.95527 * 180.24986 * 5 4 3 7 7 C 1.38159 * 120.09527 * 0.27852 * 5 4 3 8 8 C 1.39603 * 120.05126 * 179.76630 * 2 1 3 9 9 C 1.47737 * 120.13522 * 359.97438 * 8 2 1 10 10 O 1.21472 * 120.00402 * 353.79341 * 9 8 2 11 11 O 1.34716 * 119.99931 * 173.78999 * 9 8 2 12 12 C 1.45200 * 116.99902 * 180.02562 * 11 9 8 13 13 C 1.50706 * 109.46911 * 180.02562 * 12 11 9 14 14 O 1.21293 * 120.00094 * 359.97438 * 13 12 11 15 15 N 1.34774 * 119.99676 * 179.97438 * 13 12 11 16 16 C 1.37098 * 119.99696 * 179.97438 * 15 13 12 17 17 H 1.08005 * 119.99956 * 359.97438 * 16 15 13 18 18 C 1.38945 * 120.00073 * 180.02562 * 16 15 13 19 19 N 1.31415 * 120.00534 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 120.00091 * 359.97438 * 18 16 15 21 21 H 1.48507 * 109.47055 * 90.00144 * 20 18 16 22 22 H 1.48499 * 109.47436 * 210.00451 * 20 18 16 23 23 H 1.48498 * 109.46977 * 330.00516 * 20 18 16 24 24 H 1.08998 * 109.46801 * 263.64803 * 1 2 3 25 25 H 1.08998 * 109.47040 * 23.65284 * 1 2 3 26 26 H 1.09005 * 109.47173 * 143.64754 * 1 2 3 27 27 H 1.07996 * 119.91124 * 0.02562 * 3 2 1 28 28 H 1.07998 * 119.85861 * 179.76354 * 4 3 2 29 29 H 1.07992 * 120.09049 * 179.97438 * 7 5 4 30 30 H 1.09000 * 109.47127 * 299.99654 * 12 11 9 31 31 H 1.08992 * 109.47498 * 60.00049 * 12 11 9 32 32 H 0.96998 * 119.99969 * 359.97438 * 15 13 12 33 33 H 0.96994 * 120.00325 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1943 0.0000 4 6 3.5810 1.1973 -0.0052 5 6 4.2826 0.0020 0.0002 6 9 5.6335 0.0126 0.0002 7 6 3.6023 -1.2006 0.0050 8 6 2.2061 -1.2084 0.0049 9 6 1.4716 -2.4902 0.0107 10 8 0.2623 -2.4968 0.1250 11 8 2.1430 -3.6518 -0.1107 12 6 1.3565 -4.8722 -0.0975 13 6 2.2714 -6.0610 -0.2427 14 8 3.4684 -5.8958 -0.3475 15 7 1.7594 -7.3076 -0.2561 16 6 2.5916 -8.3890 -0.3887 17 1 3.6574 -8.2419 -0.4828 18 6 2.0638 -9.6742 -0.4030 19 7 2.8615 -10.7109 -0.5296 20 14 0.2203 -9.9288 -0.2409 21 1 -0.4003 -9.9265 -1.5901 22 1 -0.0433 -11.2307 0.4230 23 1 -0.3612 -8.8313 0.5732 24 1 -0.3633 -0.1137 1.0214 25 1 -0.3633 0.9413 -0.4123 26 1 -0.3634 -0.8277 -0.6092 27 1 1.6574 2.1292 0.0004 28 1 4.1166 2.1351 -0.0091 29 1 4.1490 -2.1319 0.0088 30 1 0.8140 -4.9447 0.8451 31 1 0.6470 -4.8563 -0.9247 32 1 0.8021 -7.4397 -0.1719 33 1 2.4930 -11.6081 -0.5392 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731241220.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:59 Heat of formation + Delta-G solvation = -154.572471 kcal Electronic energy + Delta-G solvation = -20820.744621 eV Core-core repulsion = 17146.674063 eV Total energy + Delta-G solvation = -3674.070558 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.96882 -41.93213 -40.44321 -39.64693 -37.59100 -36.11493 -33.89427 -33.38311 -32.81090 -30.23926 -27.91153 -26.56254 -25.25003 -23.15637 -21.99170 -21.57214 -20.54453 -19.47684 -18.44618 -17.83393 -17.71833 -17.32094 -16.96610 -16.69237 -16.67476 -16.32201 -15.89830 -15.40040 -14.86071 -14.73251 -14.63292 -14.54611 -14.23469 -13.82358 -13.77211 -13.19185 -13.01118 -12.85044 -12.76751 -12.53169 -12.47593 -12.01348 -11.89762 -11.60694 -11.27725 -10.63873 -10.36289 -10.30917 -9.67949 -8.47678 -6.11412 -0.55981 0.03155 1.24272 1.29301 1.31282 1.33128 1.44478 1.73461 2.19302 2.46153 2.73111 3.06535 3.09012 3.48936 3.66635 3.77945 3.86452 3.96695 4.06725 4.11811 4.14915 4.50822 4.70459 4.82532 4.88771 4.88834 5.04727 5.08933 5.25618 5.44674 5.50695 5.73117 5.83015 6.42457 6.54666 6.75107 7.23201 7.75373 8.69046 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.028472 B = 0.003584 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.190699 B = 7809.542648 C = 8767.576405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.028 4.028 3 C -0.092 4.092 4 C -0.098 4.098 5 C 0.064 3.936 6 F -0.145 7.145 7 C -0.108 4.108 8 C -0.120 4.120 9 C 0.506 3.494 10 O -0.505 6.505 11 O -0.345 6.345 12 C 0.069 3.931 13 C 0.446 3.554 14 O -0.610 6.610 15 N -0.574 5.574 16 C -0.336 4.336 17 H 0.059 0.941 18 C -0.008 4.008 19 N -0.926 5.926 20 Si 0.963 3.037 21 H -0.254 1.254 22 H -0.272 1.272 23 H -0.230 1.230 24 H 0.081 0.919 25 H 0.096 0.904 26 H 0.074 0.926 27 H 0.187 0.813 28 H 0.176 0.824 29 H 0.132 0.868 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.394 0.606 33 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.485 25.880 1.795 27.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.028 4.028 3 C -0.109 4.109 4 C -0.116 4.116 5 C 0.045 3.955 6 F -0.124 7.124 7 C -0.127 4.127 8 C -0.121 4.121 9 C 0.352 3.648 10 O -0.395 6.395 11 O -0.260 6.260 12 C -0.008 4.008 13 C 0.234 3.766 14 O -0.495 6.495 15 N -0.216 5.216 16 C -0.464 4.464 17 H 0.077 0.923 18 C -0.208 4.208 19 N -0.565 5.565 20 Si 0.782 3.218 21 H -0.178 1.178 22 H -0.196 1.196 23 H -0.154 1.154 24 H 0.099 0.901 25 H 0.115 0.885 26 H 0.093 0.907 27 H 0.204 0.796 28 H 0.194 0.806 29 H 0.150 0.850 30 H 0.137 0.863 31 H 0.139 0.861 32 H 0.230 0.770 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.947 25.713 1.743 27.281 hybrid contribution 0.008 -1.357 0.034 1.357 sum -8.939 24.356 1.777 26.006 Atomic orbital electron populations 1.21137 0.88333 1.04453 1.03825 1.20419 0.98160 0.90727 0.93528 1.21338 0.92701 0.98436 0.98462 1.21819 0.95380 0.97411 0.97000 1.17751 0.77085 0.94766 1.05940 1.91511 1.29223 1.97397 1.94228 1.21470 0.94072 0.98691 0.98446 1.18780 0.92394 0.90368 1.10605 1.21441 0.86003 0.84468 0.72907 1.90772 1.14695 1.87747 1.46335 1.86607 1.41560 1.14679 1.83173 1.22645 0.92019 0.79633 1.06456 1.20204 0.88964 0.84385 0.83091 1.90586 1.17999 1.85852 1.55076 1.41785 1.09210 1.04523 1.66051 1.19005 0.91922 0.84980 1.50521 0.92283 1.26117 1.05442 0.93688 0.95518 1.69783 1.38438 0.99611 1.48682 0.85397 0.76129 0.79961 0.80295 1.17822 1.19636 1.15353 0.90077 0.88497 0.90709 0.79605 0.80633 0.85045 0.86266 0.86119 0.76982 0.90762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.85 8.73 71.24 0.62 -1.23 16 2 C -0.03 -0.50 5.91 -19.60 -0.12 -0.61 16 3 C -0.09 -1.04 9.66 22.22 0.21 -0.83 16 4 C -0.10 -1.31 10.02 22.37 0.22 -1.08 16 5 C 0.06 1.37 7.29 22.34 0.16 1.53 16 6 F -0.14 -3.51 17.26 44.97 0.78 -2.73 16 7 C -0.11 -2.81 9.59 22.59 0.22 -2.60 16 8 C -0.12 -3.02 5.87 -20.10 -0.12 -3.14 16 9 C 0.51 15.15 7.83 70.33 0.55 15.70 16 10 O -0.50 -14.86 13.13 19.93 0.26 -14.60 16 11 O -0.34 -12.38 9.03 -49.87 -0.45 -12.83 16 12 C 0.07 2.35 5.95 71.24 0.42 2.78 16 13 C 0.45 20.90 7.86 87.66 0.69 21.59 16 14 O -0.61 -35.29 16.08 15.73 0.25 -35.04 16 15 N -0.57 -27.12 5.09 -306.98 -1.56 -28.68 16 16 C -0.34 -19.57 10.16 84.04 0.85 -18.72 16 17 H 0.06 4.10 7.39 -2.91 -0.02 4.08 16 18 C -0.01 -0.42 5.50 84.92 0.47 0.05 16 19 N -0.93 -54.98 13.96 21.66 0.30 -54.67 16 20 Si 0.96 37.83 27.74 68.60 1.90 39.73 16 21 H -0.25 -9.43 7.11 99.48 0.71 -8.72 16 22 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 23 H -0.23 -7.60 6.52 99.48 0.65 -6.95 16 24 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.10 0.82 8.04 -2.39 -0.02 0.80 16 26 H 0.07 1.50 5.86 -2.38 -0.01 1.49 16 27 H 0.19 0.55 8.06 -2.91 -0.02 0.52 16 28 H 0.18 1.16 8.06 -2.91 -0.02 1.14 16 29 H 0.13 4.02 7.63 -2.91 -0.02 4.00 16 30 H 0.12 3.37 8.14 -2.39 -0.02 3.35 16 31 H 0.12 3.37 8.14 -2.39 -0.02 3.35 16 32 H 0.39 15.14 5.76 -92.71 -0.53 14.60 16 33 H 0.28 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -78.09 300.91 6.25 -71.84 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: 0.58 Total: 23.52 kcal Atomic # 6 Polarization: 9.26 SS G_CDS: 4.19 Total: 13.45 kcal Atomic # 7 Polarization: -82.09 SS G_CDS: -1.26 Total: -83.35 kcal Atomic # 8 Polarization: -62.53 SS G_CDS: 0.06 Total: -62.46 kcal Atomic # 9 Polarization: -3.51 SS G_CDS: 0.78 Total: -2.73 kcal Atomic # 14 Polarization: 37.83 SS G_CDS: 1.90 Total: 39.73 kcal Total: -78.09 6.25 -71.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731241220.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.731 kcal (2) G-P(sol) polarization free energy of solvation -78.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds