Wall clock time and date at job start Wed Apr 15 2020 11:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37832 * 119.94377 * 2 1 4 4 C 1.39687 * 119.87905 * 179.97438 * 3 2 1 5 5 C 1.47595 * 120.12554 * 179.97438 * 4 3 2 6 6 O 1.21487 * 119.99957 * 0.02562 * 5 4 3 7 7 O 1.34731 * 119.99883 * 180.02562 * 5 4 3 8 8 C 1.45202 * 116.99882 * 180.02562 * 7 5 4 9 9 C 1.50699 * 109.47278 * 179.97438 * 8 7 5 10 10 O 1.21294 * 119.99422 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00184 * 179.97438 * 9 8 7 12 12 C 1.37096 * 119.99910 * 179.97438 * 11 9 8 13 13 H 1.07999 * 120.00231 * 0.02562 * 12 11 9 14 14 C 1.38945 * 120.00050 * 180.02562 * 12 11 9 15 15 N 1.31414 * 120.00067 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00313 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46754 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.47136 * 120.00122 * 16 14 12 19 19 H 1.48498 * 109.47327 * 240.00385 * 16 14 12 20 20 C 1.39725 * 119.75028 * 0.02562 * 4 3 2 21 21 C 1.37797 * 119.87438 * 359.97025 * 20 4 3 22 22 C 1.38645 * 119.93408 * 179.97438 * 2 1 3 23 23 F 1.35104 * 119.87602 * 359.72453 * 22 2 1 24 24 H 1.09000 * 109.47137 * 270.02425 * 1 2 3 25 25 H 1.09004 * 109.46531 * 30.01705 * 1 2 3 26 26 H 1.08994 * 109.47368 * 150.01701 * 1 2 3 27 27 H 1.08000 * 120.06141 * 359.97438 * 3 2 1 28 28 H 1.09005 * 109.46817 * 299.99160 * 8 7 5 29 29 H 1.08999 * 109.47377 * 59.99202 * 8 7 5 30 30 H 0.97000 * 119.99984 * 0.02562 * 11 9 8 31 31 H 0.96999 * 120.00542 * 179.97438 * 15 14 12 32 32 H 1.07996 * 120.06375 * 179.97438 * 20 4 3 33 33 H 1.08001 * 119.93663 * 180.02562 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1950 1.1943 0.0000 4 6 3.5919 1.1928 0.0005 5 6 4.3341 2.4685 0.0000 6 8 3.7301 3.5226 -0.0005 7 8 5.6814 2.4640 0.0000 8 6 6.3449 3.7556 0.0000 9 6 7.8382 3.5532 0.0006 10 8 8.2980 2.4308 0.0006 11 7 8.6628 4.6193 0.0002 12 6 10.0213 4.4351 0.0013 13 1 10.4308 3.4358 0.0021 14 6 10.8714 5.5342 0.0014 15 7 10.3732 6.7502 0.0010 16 14 12.7225 5.2833 0.0022 17 1 13.0249 3.8294 0.0020 18 1 13.3075 5.9103 -1.2102 19 1 13.3065 5.9107 1.2148 20 6 4.2838 -0.0211 0.0005 21 6 3.5857 -1.2091 0.0006 22 6 2.1989 -1.2015 0.0005 23 9 1.5195 -2.3693 0.0067 24 1 -0.3633 0.0004 1.0277 25 1 -0.3632 0.8899 -0.5141 26 1 -0.3634 -0.8901 -0.5135 27 1 1.6551 2.1297 -0.0004 28 1 6.0539 4.3135 -0.8901 29 1 6.0538 4.3136 0.8899 30 1 8.2950 5.5169 -0.0001 31 1 10.9666 7.5175 0.0014 32 1 5.3638 -0.0282 0.0005 33 1 4.1196 -2.1480 0.0010 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731248655.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:06 Heat of formation + Delta-G solvation = -147.105033 kcal Electronic energy + Delta-G solvation = -20463.686065 eV Core-core repulsion = 16789.939319 eV Total energy + Delta-G solvation = -3673.746746 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.28911 -40.56127 -39.01966 -38.05114 -36.11497 -34.02763 -33.34032 -31.43433 -31.22579 -28.51086 -27.28898 -24.96312 -23.93685 -22.55590 -20.70873 -19.61369 -18.11297 -17.93611 -17.80153 -16.88657 -16.37911 -16.25375 -16.00690 -15.63142 -14.77357 -14.52903 -14.14441 -14.03715 -13.75704 -13.66018 -13.55235 -13.43991 -12.82348 -12.51324 -12.34133 -12.03043 -12.02425 -11.64144 -11.31790 -11.16777 -10.57206 -10.46354 -10.40523 -10.31719 -9.63681 -9.32748 -9.00467 -8.55284 -8.10465 -6.51939 -3.94046 0.32362 0.88884 2.35767 2.59921 3.10426 3.22857 3.30178 3.38942 3.71421 3.83120 4.08865 4.31349 4.40064 4.50332 4.81289 4.87669 4.98713 5.13163 5.19681 5.24314 5.38774 5.49814 5.57615 5.66753 5.70900 5.83578 5.86900 5.98034 6.04999 6.45347 6.52851 7.46230 7.76362 7.93188 8.46059 9.05139 9.37138 9.86635 10.65329 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.043946 B = 0.002902 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.997546 B = 9645.926308 C =10262.475630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.135 4.135 3 C -0.029 4.029 4 C -0.127 4.127 5 C 0.506 3.494 6 O -0.509 6.509 7 O -0.320 6.320 8 C 0.061 3.939 9 C 0.438 3.562 10 O -0.576 6.576 11 N -0.552 5.552 12 C -0.302 4.302 13 H 0.107 0.893 14 C 0.025 3.975 15 N -0.897 5.897 16 Si 0.933 3.067 17 H -0.267 1.267 18 H -0.280 1.280 19 H -0.280 1.280 20 C -0.033 4.033 21 C -0.162 4.162 22 C 0.128 3.872 23 F -0.133 7.133 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.148 0.852 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.395 0.605 31 H 0.274 0.726 32 H 0.157 0.843 33 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.323 -10.648 0.011 20.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.136 4.136 3 C -0.047 4.047 4 C -0.128 4.128 5 C 0.351 3.649 6 O -0.400 6.400 7 O -0.235 6.235 8 C -0.016 4.016 9 C 0.223 3.777 10 O -0.460 6.460 11 N -0.189 5.189 12 C -0.431 4.431 13 H 0.125 0.875 14 C -0.178 4.178 15 N -0.537 5.537 16 Si 0.760 3.240 17 H -0.191 1.191 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.051 4.051 21 C -0.181 4.181 22 C 0.108 3.892 23 F -0.111 7.111 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.166 0.834 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.229 0.771 31 H 0.083 0.917 32 H 0.174 0.826 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -17.075 -10.934 0.009 20.276 hybrid contribution 0.600 0.549 0.005 0.813 sum -16.475 -10.385 0.014 19.475 Atomic orbital electron populations 1.20728 0.89426 1.03638 1.03110 1.19826 0.97457 0.91317 1.05036 1.21026 0.92007 0.98145 0.93527 1.19179 0.93151 0.91336 1.09147 1.21048 0.81596 0.89200 0.73090 1.90827 1.69861 1.33059 1.46224 1.86580 1.19000 1.34895 1.82985 1.22792 0.92928 0.82192 1.03689 1.19292 0.86094 0.86269 0.86025 1.90558 1.76794 1.23376 1.55321 1.41708 1.06401 1.07087 1.63743 1.19774 0.80067 0.95157 1.48102 0.87536 1.25318 1.01057 0.94527 0.96873 1.69620 1.36494 0.97940 1.49677 0.85742 0.81598 0.78849 0.77819 1.19071 1.20610 1.20607 1.21534 1.01857 0.90018 0.91738 1.21171 0.91912 1.00223 1.04795 1.17871 0.90077 0.80974 1.00258 1.91503 1.80142 1.46120 1.93377 0.90565 0.90581 0.90994 0.83430 0.89355 0.89361 0.77133 0.91651 0.82582 0.83650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 9.83 36.01 0.35 -0.43 16 2 C -0.14 -1.30 5.88 -104.62 -0.62 -1.91 16 3 C -0.03 -0.31 9.24 -39.19 -0.36 -0.67 16 4 C -0.13 -1.63 5.87 -104.98 -0.62 -2.25 16 5 C 0.51 8.07 7.89 34.55 0.27 8.35 16 6 O -0.51 -8.82 16.13 -19.26 -0.31 -9.13 16 7 O -0.32 -5.84 9.00 -47.26 -0.43 -6.26 16 8 C 0.06 1.15 5.95 36.01 0.21 1.36 16 9 C 0.44 10.38 7.86 -10.99 -0.09 10.30 16 10 O -0.58 -15.67 16.08 -14.12 -0.23 -15.89 16 11 N -0.55 -13.78 5.29 -10.97 -0.06 -13.84 16 12 C -0.30 -8.24 9.68 -14.94 -0.14 -8.38 16 13 H 0.11 3.04 7.16 -52.49 -0.38 2.66 16 14 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 15 N -0.90 -23.87 13.05 55.50 0.72 -23.15 16 16 Si 0.93 20.51 29.55 -169.99 -5.02 15.49 16 17 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 18 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 19 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 20 C -0.03 -0.39 9.61 -39.19 -0.38 -0.76 16 21 C -0.16 -1.61 10.01 -39.58 -0.40 -2.00 16 22 C 0.13 1.28 7.25 -39.27 -0.28 1.00 16 23 F -0.13 -1.33 16.46 2.25 0.04 -1.30 16 24 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.08 0.45 8.08 -51.93 -0.42 0.03 16 26 H 0.07 0.48 7.63 -51.93 -0.40 0.08 16 27 H 0.15 1.47 7.65 -52.49 -0.40 1.07 16 28 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 29 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 30 H 0.40 9.34 7.90 -40.82 -0.32 9.02 16 31 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 32 H 0.16 1.87 7.61 -52.49 -0.40 1.47 16 33 H 0.15 1.14 8.06 -52.49 -0.42 0.71 16 LS Contribution 308.27 15.07 4.65 4.65 Total: -1.00 -31.41 308.27 -5.91 -37.33 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -3.14 Total: 6.98 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: -2.14 Total: 5.13 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.67 Total: -36.99 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: -0.96 Total: -31.29 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.41 -5.91 -37.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731248655.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.779 kcal (2) G-P(sol) polarization free energy of solvation -31.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds