Wall clock time and date at job start Wed Apr 15 2020 11:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37832 * 119.94377 * 2 1 4 4 C 1.39687 * 119.87905 * 179.97438 * 3 2 1 5 5 C 1.47595 * 120.12554 * 179.97438 * 4 3 2 6 6 O 1.21487 * 119.99957 * 0.02562 * 5 4 3 7 7 O 1.34731 * 119.99883 * 180.02562 * 5 4 3 8 8 C 1.45202 * 116.99882 * 180.02562 * 7 5 4 9 9 C 1.50699 * 109.47278 * 179.97438 * 8 7 5 10 10 O 1.21294 * 119.99422 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00184 * 179.97438 * 9 8 7 12 12 C 1.37096 * 119.99910 * 179.97438 * 11 9 8 13 13 H 1.07999 * 120.00231 * 0.02562 * 12 11 9 14 14 C 1.38945 * 120.00050 * 180.02562 * 12 11 9 15 15 N 1.31414 * 120.00067 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00313 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46754 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.47136 * 120.00122 * 16 14 12 19 19 H 1.48498 * 109.47327 * 240.00385 * 16 14 12 20 20 C 1.39725 * 119.75028 * 0.02562 * 4 3 2 21 21 C 1.37797 * 119.87438 * 359.97025 * 20 4 3 22 22 C 1.38645 * 119.93408 * 179.97438 * 2 1 3 23 23 F 1.35104 * 119.87602 * 359.72453 * 22 2 1 24 24 H 1.09000 * 109.47137 * 270.02425 * 1 2 3 25 25 H 1.09004 * 109.46531 * 30.01705 * 1 2 3 26 26 H 1.08994 * 109.47368 * 150.01701 * 1 2 3 27 27 H 1.08000 * 120.06141 * 359.97438 * 3 2 1 28 28 H 1.09005 * 109.46817 * 299.99160 * 8 7 5 29 29 H 1.08999 * 109.47377 * 59.99202 * 8 7 5 30 30 H 0.97000 * 119.99984 * 0.02562 * 11 9 8 31 31 H 0.96999 * 120.00542 * 179.97438 * 15 14 12 32 32 H 1.07996 * 120.06375 * 179.97438 * 20 4 3 33 33 H 1.08001 * 119.93663 * 180.02562 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1950 1.1943 0.0000 4 6 3.5919 1.1928 0.0005 5 6 4.3341 2.4685 0.0000 6 8 3.7301 3.5226 -0.0005 7 8 5.6814 2.4640 0.0000 8 6 6.3449 3.7556 0.0000 9 6 7.8382 3.5532 0.0006 10 8 8.2980 2.4308 0.0006 11 7 8.6628 4.6193 0.0002 12 6 10.0213 4.4351 0.0013 13 1 10.4308 3.4358 0.0021 14 6 10.8714 5.5342 0.0014 15 7 10.3732 6.7502 0.0010 16 14 12.7225 5.2833 0.0022 17 1 13.0249 3.8294 0.0020 18 1 13.3075 5.9103 -1.2102 19 1 13.3065 5.9107 1.2148 20 6 4.2838 -0.0211 0.0005 21 6 3.5857 -1.2091 0.0006 22 6 2.1989 -1.2015 0.0005 23 9 1.5195 -2.3693 0.0067 24 1 -0.3633 0.0004 1.0277 25 1 -0.3632 0.8899 -0.5141 26 1 -0.3634 -0.8901 -0.5135 27 1 1.6551 2.1297 -0.0004 28 1 6.0539 4.3135 -0.8901 29 1 6.0538 4.3136 0.8899 30 1 8.2950 5.5169 -0.0001 31 1 10.9666 7.5175 0.0014 32 1 5.3638 -0.0282 0.0005 33 1 4.1196 -2.1480 0.0010 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731248655.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:06 Heat of formation + Delta-G solvation = -165.329785 kcal Electronic energy + Delta-G solvation = -20464.476349 eV Core-core repulsion = 16789.939319 eV Total energy + Delta-G solvation = -3674.537030 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.09107 -41.80730 -40.27713 -39.63984 -37.52052 -36.03756 -34.11238 -33.42026 -32.18689 -30.06155 -28.04917 -26.72494 -25.16401 -23.38535 -21.86445 -21.43598 -20.08386 -19.04864 -18.72640 -18.16295 -17.75653 -17.45106 -17.18728 -16.82494 -16.55190 -15.83846 -15.75784 -15.44974 -14.86263 -14.55681 -14.39776 -14.33601 -14.05758 -13.99375 -13.57823 -13.50080 -12.98192 -12.95741 -12.90465 -12.46772 -12.11942 -12.10632 -11.90954 -11.82678 -11.58714 -10.52237 -10.14787 -10.12084 -9.84565 -8.52797 -6.03338 -0.62097 0.07886 1.25189 1.27066 1.34706 1.44493 1.58800 1.86268 2.29297 2.46024 2.97438 3.03542 3.12920 3.51122 3.56668 3.68142 3.99259 4.01658 4.07076 4.14770 4.21393 4.50883 4.65757 4.74622 4.77283 4.95598 5.07641 5.11575 5.16311 5.24204 5.37215 5.65538 5.88642 6.43104 6.54707 7.02626 7.39394 7.92554 8.64485 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.043946 B = 0.002902 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.997546 B = 9645.926308 C =10262.475630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.129 4.129 3 C -0.027 4.027 4 C -0.145 4.145 5 C 0.508 3.492 6 O -0.526 6.526 7 O -0.337 6.337 8 C 0.072 3.928 9 C 0.437 3.563 10 O -0.616 6.616 11 N -0.558 5.558 12 C -0.337 4.337 13 H 0.085 0.915 14 C -0.009 4.009 15 N -0.916 5.916 16 Si 0.998 3.002 17 H -0.271 1.271 18 H -0.270 1.270 19 H -0.270 1.270 20 C -0.040 4.040 21 C -0.156 4.156 22 C 0.128 3.872 23 F -0.130 7.130 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.156 0.844 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.400 0.600 31 H 0.281 0.719 32 H 0.147 0.853 33 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.347 -10.999 0.023 21.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.130 4.130 3 C -0.045 4.045 4 C -0.146 4.146 5 C 0.355 3.645 6 O -0.417 6.417 7 O -0.252 6.252 8 C -0.006 4.006 9 C 0.224 3.776 10 O -0.503 6.503 11 N -0.195 5.195 12 C -0.466 4.466 13 H 0.103 0.897 14 C -0.210 4.210 15 N -0.556 5.556 16 Si 0.821 3.179 17 H -0.195 1.195 18 H -0.195 1.195 19 H -0.195 1.195 20 C -0.058 4.058 21 C -0.175 4.175 22 C 0.108 3.892 23 F -0.108 7.108 24 H 0.106 0.894 25 H 0.107 0.893 26 H 0.096 0.904 27 H 0.174 0.826 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.235 0.765 31 H 0.090 0.910 32 H 0.165 0.835 33 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -18.128 -11.265 0.021 21.343 hybrid contribution 0.816 0.592 0.002 1.008 sum -17.312 -10.673 0.023 20.338 Atomic orbital electron populations 1.20832 0.87339 1.04632 1.04162 1.20089 0.98897 0.90538 1.03507 1.21122 0.91066 0.99086 0.93212 1.19151 0.93839 0.90170 1.11488 1.21527 0.80578 0.90218 0.72209 1.90808 1.69745 1.33880 1.47304 1.86579 1.20533 1.34504 1.83553 1.22572 0.89399 0.82975 1.05609 1.20060 0.88126 0.85271 0.84133 1.90525 1.78191 1.24860 1.56727 1.41741 1.06086 1.07678 1.64016 1.19755 0.81526 0.94753 1.50524 0.89721 1.26125 1.05183 0.93989 0.95678 1.69675 1.38140 0.98498 1.49258 0.84802 0.76191 0.78507 0.78421 1.19514 1.19484 1.19474 1.21466 1.01531 0.90358 0.92477 1.21330 0.92091 1.00376 1.03693 1.17985 0.90169 0.81247 0.99765 1.91516 1.80052 1.46001 1.93267 0.89375 0.89264 0.90391 0.82606 0.87336 0.87344 0.76535 0.90963 0.83527 0.81583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 9.83 71.24 0.70 -0.57 16 2 C -0.13 -2.20 5.88 -19.86 -0.12 -2.32 16 3 C -0.03 -0.54 9.24 22.52 0.21 -0.33 16 4 C -0.15 -3.66 5.87 -20.10 -0.12 -3.78 16 5 C 0.51 16.10 7.89 70.29 0.55 16.65 16 6 O -0.53 -17.87 16.13 19.88 0.32 -17.55 16 7 O -0.34 -12.34 9.00 -50.03 -0.45 -12.79 16 8 C 0.07 2.66 5.95 71.24 0.42 3.09 16 9 C 0.44 21.10 7.86 87.66 0.69 21.79 16 10 O -0.62 -34.51 16.08 15.72 0.25 -34.25 16 11 N -0.56 -28.34 5.29 -306.99 -1.62 -29.96 16 12 C -0.34 -18.74 9.68 84.04 0.81 -17.93 16 13 H 0.08 5.01 7.16 -2.91 -0.02 4.99 16 14 C -0.01 -0.47 5.50 84.92 0.47 -0.01 16 15 N -0.92 -48.33 13.05 21.66 0.28 -48.05 16 16 Si 1.00 41.74 29.55 68.60 2.03 43.77 16 17 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 18 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 19 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 20 C -0.04 -0.92 9.61 22.52 0.22 -0.70 16 21 C -0.16 -2.87 10.01 22.27 0.22 -2.64 16 22 C 0.13 2.31 7.25 22.47 0.16 2.47 16 23 F -0.13 -2.30 16.46 44.97 0.74 -1.56 16 24 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.09 0.79 8.08 -2.39 -0.02 0.77 16 26 H 0.08 0.81 7.63 -2.39 -0.02 0.79 16 27 H 0.16 2.85 7.65 -2.91 -0.02 2.83 16 28 H 0.11 3.60 8.14 -2.38 -0.02 3.58 16 29 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 30 H 0.40 19.14 7.90 -92.71 -0.73 18.41 16 31 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 32 H 0.15 3.61 7.61 -2.91 -0.02 3.58 16 33 H 0.17 2.28 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -67.16 308.27 6.21 -60.96 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: 0.43 Total: 23.72 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: 4.22 Total: 15.72 kcal Atomic # 7 Polarization: -76.67 SS G_CDS: -1.34 Total: -78.01 kcal Atomic # 8 Polarization: -64.72 SS G_CDS: 0.12 Total: -64.60 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.74 Total: -1.56 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -67.16 6.21 -60.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731248655.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.374 kcal (2) G-P(sol) polarization free energy of solvation -67.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds