Wall clock time and date at job start Wed Apr 15 2020 11:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34777 * 120.00178 * 2 1 4 4 O 1.21285 * 119.99728 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00178 * 179.97438 * 3 2 1 6 6 S 1.81406 * 109.47388 * 180.02562 * 5 3 2 7 7 O 1.42100 * 109.46518 * 63.61177 * 6 5 3 8 8 C 1.81401 * 102.99917 * 180.02562 * 6 5 3 9 9 C 1.50699 * 109.46915 * 180.02562 * 8 6 5 10 10 C 1.38636 * 119.75289 * 89.99596 * 9 8 6 11 11 C 1.37615 * 120.25185 * 179.70401 * 10 9 8 12 12 C 1.40720 * 119.74367 * 0.27407 * 11 10 9 13 13 C 1.41400 * 120.24537 * 180.02562 * 12 11 10 14 14 H 1.07994 * 119.99966 * 204.38968 * 13 12 11 15 15 C 1.39950 * 119.99539 * 24.39535 * 13 12 11 16 16 N 1.30819 * 120.00082 * 17.85436 * 15 13 12 17 17 Si 1.86800 * 119.99528 * 197.85557 * 15 13 12 18 18 H 1.48492 * 109.47384 * 59.99611 * 17 15 13 19 19 H 1.48500 * 109.46729 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46863 * 299.99545 * 17 15 13 21 21 C 1.40718 * 119.51008 * 0.02562 * 12 11 10 22 22 C 1.37614 * 119.74514 * 359.97438 * 21 12 11 23 23 H 1.09009 * 109.47104 * 59.99808 * 1 2 3 24 24 H 1.08993 * 109.47598 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47453 * 300.00057 * 1 2 3 26 26 H 0.96996 * 120.00119 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.47092 * 60.00256 * 5 3 2 28 28 H 1.09000 * 109.47683 * 300.00444 * 5 3 2 29 29 H 1.08995 * 109.47166 * 59.99909 * 8 6 5 30 30 H 1.09000 * 109.47273 * 299.99390 * 8 6 5 31 31 H 1.08001 * 119.87542 * 359.97438 * 10 9 8 32 32 H 1.08000 * 120.13427 * 180.30023 * 11 10 9 33 33 H 0.97001 * 119.99459 * 180.02562 * 16 15 13 34 34 H 1.08006 * 120.12519 * 180.02562 * 21 12 11 35 35 H 1.08007 * 119.87423 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2175 -0.0005 5 6 3.6458 1.1672 0.0006 6 16 4.2506 2.8775 0.0012 7 8 3.8466 3.5221 1.2014 8 6 6.0530 2.6729 0.0011 9 6 6.7123 4.0280 0.0022 10 6 7.0132 4.6457 1.2063 11 6 7.6207 5.8805 1.2193 12 6 7.9313 6.5185 0.0042 13 6 8.5561 7.7870 0.0051 14 1 8.4464 8.4436 -0.8452 15 6 9.3167 8.1915 1.1081 16 7 9.7438 7.3039 1.9690 17 14 9.7218 9.9988 1.3509 18 1 8.4628 10.7755 1.4790 19 1 10.5330 10.1628 2.5839 20 1 10.4926 10.4945 0.1824 21 6 7.6156 5.8849 -1.2120 22 6 7.0081 4.6502 -1.2009 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.9500 -0.8400 -0.0004 27 1 4.0095 0.6532 -0.8891 28 1 4.0089 0.6535 0.8907 29 1 6.3561 2.1217 -0.8891 30 1 6.3562 2.1211 0.8909 31 1 6.7739 4.1542 2.1377 32 1 7.8587 6.3578 2.1584 33 1 10.2706 7.5844 2.7337 34 1 7.8499 6.3655 -2.1504 35 1 6.7652 4.1618 -2.1331 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399054944.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:47 Heat of formation + Delta-G solvation = -60.021495 kcal Electronic energy + Delta-G solvation = -18712.293982 eV Core-core repulsion = 15608.536638 eV Total energy + Delta-G solvation = -3103.757344 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -39.63993 -37.60884 -35.23965 -34.78459 -33.97919 -31.23648 -30.46355 -29.30028 -27.55755 -26.29525 -23.95475 -21.02240 -20.91179 -20.06446 -17.53559 -17.31536 -17.12341 -16.19977 -15.80697 -15.34689 -14.69743 -14.62421 -14.21068 -13.97786 -13.68168 -13.58427 -13.26206 -12.77143 -12.56420 -12.51688 -12.06172 -11.95669 -11.63371 -11.44110 -11.08531 -11.02300 -10.64837 -10.55676 -10.18969 -9.91072 -9.63117 -9.39823 -9.38515 -9.11499 -8.01059 -7.46027 -7.18837 -6.78073 -4.35583 1.63705 2.47344 2.77102 3.02073 3.06027 3.07829 3.08318 3.10906 3.30118 3.92060 4.19668 4.59947 4.64586 4.95676 5.05065 5.25339 5.31356 5.53419 5.56681 5.64805 5.73623 6.13286 6.26206 6.34650 6.40186 6.95080 7.04724 7.17413 7.25069 7.33123 7.59191 7.81566 8.00186 8.03672 8.07244 8.26681 8.61965 8.86670 8.95077 10.15516 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.046602 B = 0.003216 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.693774 B = 8704.377152 C = 8821.621071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.737 5.737 3 C 0.539 3.461 4 O -0.528 6.528 5 C -0.506 4.506 6 S 1.278 4.722 7 O -0.821 6.821 8 C -0.373 4.373 9 C -0.207 4.207 10 C -0.086 4.086 11 C -0.163 4.163 12 C 0.113 3.887 13 C -0.458 4.458 14 H 0.080 0.920 15 C 0.075 3.925 16 N -0.790 5.790 17 Si 0.910 3.090 18 H -0.263 1.263 19 H -0.278 1.278 20 H -0.265 1.265 21 C -0.226 4.226 22 C -0.081 4.081 23 H 0.062 0.938 24 H 0.074 0.926 25 H 0.059 0.941 26 H 0.402 0.598 27 H 0.140 0.860 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.118 0.882 33 H 0.282 0.718 34 H 0.096 0.904 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.907 -14.106 -6.150 18.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.389 5.389 3 C 0.325 3.675 4 O -0.404 6.404 5 C -0.640 4.640 6 S 1.474 4.526 7 O -0.816 6.816 8 C -0.510 4.510 9 C -0.211 4.211 10 C -0.106 4.106 11 C -0.183 4.183 12 C 0.110 3.890 13 C -0.487 4.487 14 H 0.098 0.902 15 C -0.144 4.144 16 N -0.415 5.415 17 Si 0.734 3.266 18 H -0.187 1.187 19 H -0.203 1.203 20 H -0.189 1.189 21 C -0.246 4.246 22 C -0.101 4.101 23 H 0.081 0.919 24 H 0.093 0.907 25 H 0.078 0.922 26 H 0.235 0.765 27 H 0.158 0.842 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.136 0.864 33 H 0.093 0.907 34 H 0.114 0.886 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.821 -12.627 -5.898 17.644 hybrid contribution 1.337 -1.052 2.102 2.704 sum -9.485 -13.678 -3.796 17.073 Atomic orbital electron populations 1.21560 0.79599 1.02101 1.02600 1.45805 1.07742 1.08697 1.76700 1.19784 0.88523 0.83803 0.75395 1.90784 1.70173 1.30876 1.48576 1.28355 0.98642 1.28343 1.08639 1.71408 0.86800 0.82029 1.12319 1.93107 1.76931 1.61278 1.50256 1.26333 1.17349 1.01462 1.05897 1.18245 1.13244 0.95489 0.94093 1.20555 0.98680 0.96119 0.95233 1.21303 1.02495 0.95590 0.98895 1.17669 0.88323 0.92101 0.90942 1.19617 1.26309 1.00752 1.02068 0.90211 1.25958 0.93953 0.99659 0.94806 1.69820 1.25298 1.35443 1.10911 0.86344 0.79320 0.82487 0.78462 1.18703 1.20348 1.18923 1.20963 1.09923 0.96650 0.97032 1.20390 0.99110 0.95517 0.95070 0.91933 0.90740 0.92225 0.76474 0.84211 0.87316 0.87347 0.90746 0.89782 0.86394 0.90720 0.88607 0.88617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.65 10.70 59.84 0.64 1.29 16 2 N -0.74 -6.52 5.71 -67.08 -0.38 -6.90 16 3 C 0.54 6.95 7.85 -10.99 -0.09 6.86 16 4 O -0.53 -9.18 15.70 4.51 0.07 -9.11 16 5 C -0.51 -5.47 6.41 36.00 0.23 -5.24 16 6 S 1.28 19.77 12.35 -107.50 -1.33 18.45 16 7 O -0.82 -18.62 17.94 -36.27 -0.65 -19.27 16 8 C -0.37 -6.02 6.04 36.01 0.22 -5.81 16 9 C -0.21 -4.47 5.16 -104.33 -0.54 -5.01 16 10 C -0.09 -2.15 9.67 -39.66 -0.38 -2.53 16 11 C -0.16 -4.42 8.70 -38.87 -0.34 -4.76 16 12 C 0.11 3.03 5.58 -106.82 -0.60 2.43 16 13 C -0.46 -12.18 9.05 -37.74 -0.34 -12.52 16 14 H 0.08 2.01 7.91 -52.49 -0.42 1.60 16 15 C 0.07 1.89 5.14 -17.34 -0.09 1.80 16 16 N -0.79 -20.70 10.95 55.55 0.61 -20.09 16 17 Si 0.91 18.81 29.60 -169.99 -5.03 13.78 16 18 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 19 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 20 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 21 C -0.23 -5.41 9.80 -38.87 -0.38 -5.79 16 22 C -0.08 -1.72 9.67 -39.66 -0.38 -2.10 16 23 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 24 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.40 2.18 8.83 -40.82 -0.36 1.82 16 27 H 0.14 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.11 1.12 8.14 -51.92 -0.42 0.69 16 29 H 0.11 1.32 8.08 -51.93 -0.42 0.90 16 30 H 0.07 1.21 8.08 -51.92 -0.42 0.79 16 31 H 0.08 2.03 8.06 -52.49 -0.42 1.61 16 32 H 0.12 3.31 6.16 -52.49 -0.32 2.99 16 33 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 34 H 0.10 2.11 8.06 -52.48 -0.42 1.69 16 35 H 0.10 1.60 8.06 -52.48 -0.42 1.18 16 LS Contribution 319.57 15.07 4.82 4.82 Total: -1.00 -36.27 319.57 -8.40 -44.67 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -4.45 Total: 5.03 kcal Atomic # 6 Polarization: -29.32 SS G_CDS: -2.05 Total: -31.36 kcal Atomic # 7 Polarization: -27.22 SS G_CDS: 0.23 Total: -26.99 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -0.58 Total: -28.38 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Atomic # 16 Polarization: 19.77 SS G_CDS: -1.33 Total: 18.45 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -36.27 -8.40 -44.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399054944.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.353 kcal (2) G-P(sol) polarization free energy of solvation -36.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds