Wall clock time and date at job start Wed Apr 15 2020 11:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34777 * 120.00178 * 2 1 4 4 O 1.21285 * 119.99728 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00178 * 179.97438 * 3 2 1 6 6 S 1.81406 * 109.47388 * 180.02562 * 5 3 2 7 7 O 1.42100 * 109.46518 * 63.61177 * 6 5 3 8 8 C 1.81401 * 102.99917 * 180.02562 * 6 5 3 9 9 C 1.50699 * 109.46915 * 180.02562 * 8 6 5 10 10 C 1.38636 * 119.75289 * 89.99596 * 9 8 6 11 11 C 1.37615 * 120.25185 * 179.70401 * 10 9 8 12 12 C 1.40720 * 119.74367 * 0.27407 * 11 10 9 13 13 C 1.41400 * 120.24537 * 180.02562 * 12 11 10 14 14 H 1.07994 * 119.99966 * 204.38968 * 13 12 11 15 15 C 1.39950 * 119.99539 * 24.39535 * 13 12 11 16 16 N 1.30819 * 120.00082 * 17.85436 * 15 13 12 17 17 Si 1.86800 * 119.99528 * 197.85557 * 15 13 12 18 18 H 1.48492 * 109.47384 * 59.99611 * 17 15 13 19 19 H 1.48500 * 109.46729 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46863 * 299.99545 * 17 15 13 21 21 C 1.40718 * 119.51008 * 0.02562 * 12 11 10 22 22 C 1.37614 * 119.74514 * 359.97438 * 21 12 11 23 23 H 1.09009 * 109.47104 * 59.99808 * 1 2 3 24 24 H 1.08993 * 109.47598 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47453 * 300.00057 * 1 2 3 26 26 H 0.96996 * 120.00119 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.47092 * 60.00256 * 5 3 2 28 28 H 1.09000 * 109.47683 * 300.00444 * 5 3 2 29 29 H 1.08995 * 109.47166 * 59.99909 * 8 6 5 30 30 H 1.09000 * 109.47273 * 299.99390 * 8 6 5 31 31 H 1.08001 * 119.87542 * 359.97438 * 10 9 8 32 32 H 1.08000 * 120.13427 * 180.30023 * 11 10 9 33 33 H 0.97001 * 119.99459 * 180.02562 * 16 15 13 34 34 H 1.08006 * 120.12519 * 180.02562 * 21 12 11 35 35 H 1.08007 * 119.87423 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2175 -0.0005 5 6 3.6458 1.1672 0.0006 6 16 4.2506 2.8775 0.0012 7 8 3.8466 3.5221 1.2014 8 6 6.0530 2.6729 0.0011 9 6 6.7123 4.0280 0.0022 10 6 7.0132 4.6457 1.2063 11 6 7.6207 5.8805 1.2193 12 6 7.9313 6.5185 0.0042 13 6 8.5561 7.7870 0.0051 14 1 8.4464 8.4436 -0.8452 15 6 9.3167 8.1915 1.1081 16 7 9.7438 7.3039 1.9690 17 14 9.7218 9.9988 1.3509 18 1 8.4628 10.7755 1.4790 19 1 10.5330 10.1628 2.5839 20 1 10.4926 10.4945 0.1824 21 6 7.6156 5.8849 -1.2120 22 6 7.0081 4.6502 -1.2009 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.9500 -0.8400 -0.0004 27 1 4.0095 0.6532 -0.8891 28 1 4.0089 0.6535 0.8907 29 1 6.3561 2.1217 -0.8891 30 1 6.3562 2.1211 0.8909 31 1 6.7739 4.1542 2.1377 32 1 7.8587 6.3578 2.1584 33 1 10.2706 7.5844 2.7337 34 1 7.8499 6.3655 -2.1504 35 1 6.7652 4.1618 -2.1331 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399054944.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:43 Heat of formation + Delta-G solvation = -88.265152 kcal Electronic energy + Delta-G solvation = -18713.518718 eV Core-core repulsion = 15608.536638 eV Total energy + Delta-G solvation = -3104.982081 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -40.61822 -39.44161 -36.72506 -35.82848 -35.66397 -32.96687 -31.40150 -31.17256 -29.25303 -27.05396 -25.69578 -22.89727 -22.07353 -21.62258 -19.22112 -18.61163 -18.23293 -17.23450 -17.14756 -16.73980 -16.18684 -15.85276 -15.68206 -15.64542 -15.07320 -14.73012 -14.42133 -14.27244 -13.95103 -13.81294 -13.44604 -13.16892 -13.11150 -13.03737 -12.75843 -12.50980 -12.39005 -12.23637 -11.56193 -11.36875 -11.25912 -11.16260 -10.92966 -10.19176 -9.48646 -9.32221 -8.88223 -8.63648 -6.32093 0.36447 1.07790 1.15609 1.36015 1.47953 1.52088 1.54650 1.91166 2.19069 2.30042 2.73890 3.02270 3.75607 3.81577 4.13653 4.21723 4.33867 4.45895 4.48865 4.57156 4.61659 4.72917 4.94646 4.96046 5.10471 5.15609 5.36882 5.39063 5.44504 5.70223 5.96091 6.10888 6.19660 6.37924 6.44253 6.70284 6.92843 7.04174 7.17708 8.31502 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.046602 B = 0.003216 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.693774 B = 8704.377152 C = 8821.621071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.717 5.717 3 C 0.527 3.473 4 O -0.585 6.585 5 C -0.484 4.484 6 S 1.300 4.700 7 O -0.908 6.908 8 C -0.373 4.373 9 C -0.196 4.196 10 C -0.110 4.110 11 C -0.196 4.196 12 C 0.076 3.924 13 C -0.498 4.498 14 H 0.082 0.918 15 C 0.030 3.970 16 N -0.829 5.829 17 Si 0.983 3.017 18 H -0.263 1.263 19 H -0.270 1.270 20 H -0.252 1.252 21 C -0.237 4.237 22 C -0.076 4.076 23 H 0.057 0.943 24 H 0.116 0.884 25 H 0.040 0.960 26 H 0.422 0.578 27 H 0.202 0.798 28 H 0.124 0.876 29 H 0.166 0.834 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.286 0.714 34 H 0.111 0.889 35 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.507 -17.155 -8.591 21.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.370 5.370 3 C 0.313 3.687 4 O -0.465 6.465 5 C -0.622 4.622 6 S 1.501 4.499 7 O -0.904 6.904 8 C -0.510 4.510 9 C -0.199 4.199 10 C -0.130 4.130 11 C -0.216 4.216 12 C 0.073 3.927 13 C -0.528 4.528 14 H 0.101 0.899 15 C -0.185 4.185 16 N -0.455 5.455 17 Si 0.804 3.196 18 H -0.188 1.188 19 H -0.195 1.195 20 H -0.176 1.176 21 C -0.257 4.257 22 C -0.094 4.094 23 H 0.076 0.924 24 H 0.134 0.866 25 H 0.058 0.942 26 H 0.260 0.740 27 H 0.219 0.781 28 H 0.142 0.858 29 H 0.183 0.817 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.109 0.891 33 H 0.097 0.903 34 H 0.130 0.870 35 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -11.388 -15.689 -8.345 21.106 hybrid contribution 1.313 -0.491 2.780 3.113 sum -10.075 -16.180 -5.565 19.856 Atomic orbital electron populations 1.21729 0.78791 1.04464 1.01466 1.45695 1.08378 1.08464 1.74474 1.20164 0.89373 0.84072 0.75047 1.90785 1.71291 1.32999 1.51470 1.28037 0.97430 1.24308 1.12444 1.70320 0.85315 0.84167 1.10124 1.93018 1.78411 1.66239 1.52683 1.26392 1.17283 0.98612 1.08686 1.18788 1.10889 0.97399 0.92829 1.20766 0.99433 0.95929 0.96834 1.21219 1.04966 0.97092 0.98339 1.18040 0.89621 0.93046 0.91988 1.19892 1.28010 1.01553 1.03353 0.89944 1.26858 0.93343 1.04187 0.94093 1.69900 1.26381 1.37568 1.11682 0.85237 0.79041 0.76432 0.78923 1.18779 1.19462 1.17586 1.21326 1.09898 0.97927 0.96522 1.20963 0.96926 0.94336 0.97221 0.92395 0.86597 0.94165 0.74045 0.78116 0.85803 0.81652 0.90816 0.90568 0.89145 0.90326 0.87045 0.82675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.00 10.70 127.77 1.37 2.37 16 2 N -0.72 -9.98 5.71 -484.53 -2.77 -12.75 16 3 C 0.53 12.03 7.85 87.66 0.69 12.72 16 4 O -0.58 -19.93 15.70 -2.05 -0.03 -19.96 16 5 C -0.48 -8.14 6.41 71.23 0.46 -7.69 16 6 S 1.30 37.19 12.35 -56.49 -0.70 36.50 16 7 O -0.91 -41.96 17.94 -147.99 -2.65 -44.61 16 8 C -0.37 -10.59 6.04 71.24 0.43 -10.16 16 9 C -0.20 -8.19 5.16 -19.67 -0.10 -8.29 16 10 C -0.11 -5.69 9.67 22.22 0.21 -5.47 16 11 C -0.20 -11.32 8.70 22.73 0.20 -11.13 16 12 C 0.08 4.25 5.58 -21.29 -0.12 4.13 16 13 C -0.50 -27.79 9.05 23.46 0.21 -27.58 16 14 H 0.08 4.33 7.91 -2.91 -0.02 4.31 16 15 C 0.03 1.56 5.14 85.26 0.44 2.00 16 16 N -0.83 -46.02 10.95 21.83 0.24 -45.78 16 17 Si 0.98 39.94 29.60 68.60 2.03 41.97 16 18 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 19 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 20 H -0.25 -9.62 7.11 99.48 0.71 -8.92 16 21 C -0.24 -11.29 9.80 22.73 0.22 -11.07 16 22 C -0.08 -2.98 9.67 22.22 0.21 -2.77 16 23 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 24 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 25 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.42 2.40 8.83 -92.71 -0.82 1.58 16 27 H 0.20 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.17 2.83 8.08 -2.39 -0.02 2.81 16 30 H 0.07 2.16 8.08 -2.39 -0.02 2.14 16 31 H 0.08 3.90 8.06 -2.91 -0.02 3.88 16 32 H 0.09 5.55 6.16 -2.91 -0.02 5.54 16 33 H 0.29 14.45 8.30 -92.71 -0.77 13.68 16 34 H 0.11 4.82 8.06 -2.91 -0.02 4.80 16 35 H 0.16 4.25 8.06 -2.91 -0.02 4.23 16 Total: -1.00 -89.05 319.57 0.63 -88.43 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 0.29 Total: 19.16 kcal Atomic # 6 Polarization: -67.16 SS G_CDS: 4.22 Total: -62.94 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: -2.53 Total: -58.53 kcal Atomic # 8 Polarization: -61.89 SS G_CDS: -2.69 Total: -64.58 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 2.03 Total: 41.97 kcal Atomic # 16 Polarization: 37.19 SS G_CDS: -0.70 Total: 36.50 kcal Total: -89.05 0.63 -88.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399054944.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.161 kcal (2) G-P(sol) polarization free energy of solvation -89.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds