Wall clock time and date at job start Wed Apr 15 2020 11:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47190 * 304.19280 * 3 2 1 5 5 C 1.46500 * 120.00018 * 85.00118 * 4 3 2 6 6 C 1.47195 * 109.47192 * 84.99857 * 5 4 3 7 7 C 5.26211 * 147.67970 * 0.83331 * 2 1 3 8 8 S 1.65594 * 120.00002 * 265.00372 * 4 3 2 9 9 O 1.42108 * 104.27690 * 206.06890 * 8 4 3 10 10 O 1.42097 * 104.27838 * 333.92649 * 8 4 3 11 11 C 1.81398 * 104.45138 * 89.99850 * 8 4 3 12 12 C 1.53005 * 109.47060 * 173.80226 * 11 8 4 13 13 C 1.50694 * 115.55146 * 65.19251 * 12 11 8 14 14 H 1.07996 * 120.00162 * 264.78299 * 13 12 11 15 15 C 1.37877 * 119.99770 * 84.78588 * 13 12 11 16 16 N 1.31517 * 120.00392 * 352.23169 * 15 13 12 17 17 Si 1.86798 * 120.00060 * 172.23169 * 15 13 12 18 18 H 1.48504 * 109.46888 * 89.99771 * 17 15 13 19 19 H 1.48492 * 109.47411 * 209.99916 * 17 15 13 20 20 H 1.48498 * 109.47388 * 330.00063 * 17 15 13 21 21 C 1.52999 * 117.49627 * 279.52310 * 12 11 8 22 22 C 1.53001 * 117.49711 * 210.86902 * 12 11 8 23 23 H 4.40642 * 5.51362 * 179.97438 * 4 1 2 24 24 H 1.08998 * 109.47070 * 184.19122 * 3 2 1 25 25 H 1.09000 * 109.47245 * 64.19520 * 3 2 1 26 26 H 1.08996 * 109.47185 * 205.00524 * 5 4 3 27 27 H 1.09005 * 109.47282 * 325.00131 * 5 4 3 28 28 H 6.19758 * 150.20073 * 8.72718 * 2 1 3 29 29 H 1.08997 * 109.47399 * 293.79835 * 11 8 4 30 30 H 1.09007 * 109.47236 * 53.80299 * 11 8 4 31 31 H 0.96993 * 120.00107 * 185.03003 * 16 15 13 32 32 H 1.08996 * 117.50289 * 359.97438 * 21 12 11 33 33 H 1.08996 * 117.49941 * 145.02372 * 21 12 11 34 34 H 1.09001 * 117.49657 * 214.98310 * 22 12 11 35 35 H 1.08999 * 117.50204 * 359.96814 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.7753 1.1425 5 6 3.2753 -2.2295 1.0339 6 6 4.5809 -2.5530 0.4360 7 6 5.6209 -2.8131 -0.0409 8 16 3.5281 -0.0088 2.5566 9 8 4.4866 -0.8642 3.1640 10 8 3.8731 1.3102 2.1560 11 6 1.9860 -0.0012 3.5116 12 6 2.2570 0.5481 4.9137 13 6 2.6799 1.9932 4.9751 14 1 3.7288 2.2479 5.0104 15 6 1.7277 2.9903 4.9862 16 7 0.4617 2.6928 4.7899 17 14 2.2356 4.7637 5.2801 18 1 2.5418 5.4128 3.9801 19 1 1.1272 5.4919 5.9481 20 1 3.4417 4.7962 6.1458 21 6 2.8616 -0.4092 5.9427 22 6 1.3955 0.0148 6.0601 23 1 -1.0498 0.0000 0.0003 24 1 3.0089 1.0257 0.0751 25 1 3.0096 -0.4465 -0.9252 26 1 3.2094 -2.6760 2.0260 27 1 2.4790 -2.6256 0.4037 28 1 6.5521 -3.0443 -0.4673 29 1 1.2513 0.6290 3.0104 30 1 1.6008 -1.0181 3.5880 31 1 -0.1983 3.4005 4.7250 32 1 3.0659 -1.4304 5.6211 33 1 3.5649 0.0063 6.6644 34 1 1.1348 0.7091 6.8589 35 1 0.6353 -0.7270 5.8155 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491704140.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:17 Heat of formation + Delta-G solvation = 71.498176 kcal Electronic energy + Delta-G solvation = -20258.526595 eV Core-core repulsion = 17160.472371 eV Total energy + Delta-G solvation = -3098.054223 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 2.61 seconds Orbital eigenvalues (eV) -37.10951 -36.76191 -36.39488 -35.11333 -33.45891 -32.04650 -31.90763 -28.20458 -28.02820 -25.53979 -24.99718 -21.22265 -19.69832 -18.90000 -18.64258 -17.55742 -17.10180 -16.55783 -15.97423 -15.31135 -14.73235 -14.49295 -14.30591 -13.87669 -13.69805 -13.44762 -13.07322 -12.99144 -11.96461 -11.84626 -11.61963 -11.30519 -11.20194 -11.04047 -10.94091 -10.60085 -10.49792 -10.45827 -10.39014 -10.16080 -10.05652 -9.99386 -9.76788 -9.31045 -8.95963 -8.56442 -8.10193 -6.14048 -4.24713 0.92280 2.54762 2.90571 2.97534 2.98585 3.30637 3.36261 3.41292 3.59012 4.37119 4.39292 4.44011 4.64581 4.85222 4.90917 5.13111 5.19345 5.42223 5.45182 5.60118 5.73097 5.93795 5.96674 6.04575 6.06330 6.25610 6.37107 6.60773 6.64329 6.71439 6.98487 7.24429 7.38174 7.67646 7.72954 7.80193 8.19775 8.80554 9.46456 10.93570 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.019045 B = 0.006742 C = 0.006177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.860601 B = 4152.189042 C = 4531.990544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.212 4.212 3 C 0.223 3.777 4 N -1.002 6.002 5 C 0.232 3.768 6 C -0.196 4.196 7 C -0.194 4.194 8 S 2.599 3.401 9 O -0.962 6.962 10 O -0.944 6.944 11 C -0.548 4.548 12 C 0.042 3.958 13 C -0.517 4.517 14 H 0.068 0.932 15 C 0.083 3.917 16 N -0.873 5.873 17 Si 0.891 3.109 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.269 1.269 21 C -0.208 4.208 22 C -0.140 4.140 23 H 0.217 0.783 24 H 0.120 0.880 25 H 0.100 0.900 26 H 0.105 0.895 27 H 0.099 0.901 28 H 0.217 0.783 29 H 0.135 0.865 30 H 0.097 0.903 31 H 0.263 0.737 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.649 -9.140 -9.313 13.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.214 4.214 3 C 0.099 3.901 4 N -0.834 5.834 5 C 0.107 3.893 6 C -0.197 4.197 7 C -0.212 4.212 8 S 2.698 3.302 9 O -0.953 6.953 10 O -0.934 6.934 11 C -0.681 4.681 12 C 0.040 3.960 13 C -0.554 4.554 14 H 0.086 0.914 15 C -0.123 4.123 16 N -0.509 5.509 17 Si 0.717 3.283 18 H -0.200 1.200 19 H -0.210 1.210 20 H -0.194 1.194 21 C -0.245 4.245 22 C -0.180 4.180 23 H 0.234 0.766 24 H 0.138 0.862 25 H 0.118 0.882 26 H 0.123 0.877 27 H 0.117 0.883 28 H 0.233 0.767 29 H 0.154 0.846 30 H 0.116 0.884 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.339 -8.719 -9.088 12.665 hybrid contribution -0.726 0.714 0.025 1.019 sum 0.613 -8.004 -9.063 12.107 Atomic orbital electron populations 1.24952 0.95900 1.00250 0.98763 1.23707 0.95045 1.00895 1.01768 1.18194 0.83329 0.98471 0.90147 1.58175 1.81415 1.14421 1.29363 1.18043 0.89333 0.80462 1.01440 1.23571 0.96694 1.00630 0.98855 1.24866 0.96532 0.98926 1.00905 1.05611 0.77902 0.73609 0.73127 1.93515 1.57966 1.67615 1.76188 1.93521 1.82433 1.37289 1.80198 1.29991 1.19366 1.07058 1.11721 1.18298 1.00900 0.93306 0.83501 1.20513 0.93413 0.87911 1.53605 0.91382 1.24949 0.94653 0.99220 0.93430 1.69976 1.01028 1.32941 1.46922 0.86591 0.78452 0.84273 0.78953 1.20015 1.21034 1.19394 1.23200 0.97313 0.98635 1.05381 1.22552 0.91124 1.01611 1.02666 0.76603 0.86188 0.88236 0.87720 0.88265 0.76661 0.84643 0.88428 0.92725 0.90683 0.89486 0.89545 0.91510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.37 19.25 29.55 0.57 -1.80 16 2 C -0.21 -3.06 13.67 -37.12 -0.51 -3.57 16 3 C 0.22 3.18 6.13 -6.83 -0.04 3.14 16 4 N -1.00 -15.95 2.64 -120.63 -0.32 -16.26 16 5 C 0.23 3.09 5.73 -6.83 -0.04 3.05 16 6 C -0.20 -2.76 13.66 -37.13 -0.51 -3.26 16 7 C -0.19 -2.42 19.25 29.54 0.57 -1.85 16 8 S 2.60 53.86 5.11 -107.50 -0.55 53.32 16 9 O -0.96 -21.32 16.98 -57.54 -0.98 -22.30 16 10 O -0.94 -22.64 16.20 -57.54 -0.93 -23.57 16 11 C -0.55 -11.68 6.03 37.16 0.22 -11.46 16 12 C 0.04 1.04 1.32 -155.66 -0.21 0.83 16 13 C -0.52 -14.24 8.18 -34.44 -0.28 -14.52 16 14 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 15 C 0.08 2.26 5.38 -17.82 -0.10 2.17 16 16 N -0.87 -24.07 12.98 55.43 0.72 -23.35 16 17 Si 0.89 21.44 29.55 -169.99 -5.02 16.42 16 18 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 C -0.21 -4.57 9.96 -26.70 -0.27 -4.84 16 22 C -0.14 -3.19 9.49 -26.70 -0.25 -3.45 16 23 H 0.22 2.11 7.80 -54.10 -0.42 1.69 16 24 H 0.12 1.83 6.82 -51.93 -0.35 1.48 16 25 H 0.10 1.12 8.11 -51.93 -0.42 0.70 16 26 H 0.10 1.32 7.61 -51.93 -0.40 0.93 16 27 H 0.10 1.01 8.11 -51.93 -0.42 0.59 16 28 H 0.22 1.84 7.80 -54.09 -0.42 1.42 16 29 H 0.14 3.06 8.14 -51.93 -0.42 2.64 16 30 H 0.10 1.75 8.09 -51.92 -0.42 1.33 16 31 H 0.26 6.90 8.32 -40.82 -0.34 6.56 16 32 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 33 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 34 H 0.09 2.07 8.14 -51.93 -0.42 1.65 16 35 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 LS Contribution 334.01 15.07 5.03 5.03 Total: -1.00 -33.41 334.01 -7.40 -40.80 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -4.51 Total: 5.48 kcal Atomic # 6 Polarization: -34.73 SS G_CDS: -0.84 Total: -35.56 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.40 Total: -39.61 kcal Atomic # 8 Polarization: -43.96 SS G_CDS: -1.91 Total: -45.87 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: 53.86 SS G_CDS: -0.55 Total: 53.32 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.41 -7.40 -40.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491704140.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.302 kcal (2) G-P(sol) polarization free energy of solvation -33.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.61 seconds