Wall clock time and date at job start Wed Apr 15 2020 11:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47190 * 304.19280 * 3 2 1 5 5 C 1.46500 * 120.00018 * 85.00118 * 4 3 2 6 6 C 1.47195 * 109.47192 * 84.99857 * 5 4 3 7 7 C 5.26211 * 147.67970 * 0.83331 * 2 1 3 8 8 S 1.65594 * 120.00002 * 265.00372 * 4 3 2 9 9 O 1.42108 * 104.27690 * 206.06890 * 8 4 3 10 10 O 1.42097 * 104.27838 * 333.92649 * 8 4 3 11 11 C 1.81398 * 104.45138 * 89.99850 * 8 4 3 12 12 C 1.53005 * 109.47060 * 173.80226 * 11 8 4 13 13 C 1.50694 * 115.55146 * 65.19251 * 12 11 8 14 14 H 1.07996 * 120.00162 * 264.78299 * 13 12 11 15 15 C 1.37877 * 119.99770 * 84.78588 * 13 12 11 16 16 N 1.31517 * 120.00392 * 352.23169 * 15 13 12 17 17 Si 1.86798 * 120.00060 * 172.23169 * 15 13 12 18 18 H 1.48504 * 109.46888 * 89.99771 * 17 15 13 19 19 H 1.48492 * 109.47411 * 209.99916 * 17 15 13 20 20 H 1.48498 * 109.47388 * 330.00063 * 17 15 13 21 21 C 1.52999 * 117.49627 * 279.52310 * 12 11 8 22 22 C 1.53001 * 117.49711 * 210.86902 * 12 11 8 23 23 H 4.40642 * 5.51362 * 179.97438 * 4 1 2 24 24 H 1.08998 * 109.47070 * 184.19122 * 3 2 1 25 25 H 1.09000 * 109.47245 * 64.19520 * 3 2 1 26 26 H 1.08996 * 109.47185 * 205.00524 * 5 4 3 27 27 H 1.09005 * 109.47282 * 325.00131 * 5 4 3 28 28 H 6.19758 * 150.20073 * 8.72718 * 2 1 3 29 29 H 1.08997 * 109.47399 * 293.79835 * 11 8 4 30 30 H 1.09007 * 109.47236 * 53.80299 * 11 8 4 31 31 H 0.96993 * 120.00107 * 185.03003 * 16 15 13 32 32 H 1.08996 * 117.50289 * 359.97438 * 21 12 11 33 33 H 1.08996 * 117.49941 * 145.02372 * 21 12 11 34 34 H 1.09001 * 117.49657 * 214.98310 * 22 12 11 35 35 H 1.08999 * 117.50204 * 359.96814 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.7753 1.1425 5 6 3.2753 -2.2295 1.0339 6 6 4.5809 -2.5530 0.4360 7 6 5.6209 -2.8131 -0.0409 8 16 3.5281 -0.0088 2.5566 9 8 4.4866 -0.8642 3.1640 10 8 3.8731 1.3102 2.1560 11 6 1.9860 -0.0012 3.5116 12 6 2.2570 0.5481 4.9137 13 6 2.6799 1.9932 4.9751 14 1 3.7288 2.2479 5.0104 15 6 1.7277 2.9903 4.9862 16 7 0.4617 2.6928 4.7899 17 14 2.2356 4.7637 5.2801 18 1 2.5418 5.4128 3.9801 19 1 1.1272 5.4919 5.9481 20 1 3.4417 4.7962 6.1458 21 6 2.8616 -0.4092 5.9427 22 6 1.3955 0.0148 6.0601 23 1 -1.0498 0.0000 0.0003 24 1 3.0089 1.0257 0.0751 25 1 3.0096 -0.4465 -0.9252 26 1 3.2094 -2.6760 2.0260 27 1 2.4790 -2.6256 0.4037 28 1 6.5521 -3.0443 -0.4673 29 1 1.2513 0.6290 3.0104 30 1 1.6008 -1.0181 3.5880 31 1 -0.1983 3.4005 4.7250 32 1 3.0659 -1.4304 5.6211 33 1 3.5649 0.0063 6.6644 34 1 1.1348 0.7091 6.8589 35 1 0.6353 -0.7270 5.8155 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491704140.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:10 Heat of formation + Delta-G solvation = 50.227856 kcal Electronic energy + Delta-G solvation = -20259.448945 eV Core-core repulsion = 17160.472371 eV Total energy + Delta-G solvation = -3098.976573 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -38.59746 -38.24087 -38.09657 -36.82659 -34.48347 -34.09791 -32.96573 -29.89089 -29.09578 -27.53731 -26.20694 -23.00127 -21.48243 -20.31982 -19.72960 -18.91977 -18.38779 -18.29973 -17.37281 -16.86264 -16.67826 -15.97434 -15.63507 -15.58175 -15.01324 -14.68010 -14.53736 -14.09947 -13.77041 -13.70252 -13.15041 -13.04030 -12.95006 -12.87974 -12.87542 -12.44708 -12.24451 -11.94590 -11.66489 -11.52632 -11.42077 -11.08486 -11.01203 -10.88910 -10.65943 -10.53731 -9.88906 -8.20456 -6.35266 -0.65589 1.35555 1.37185 1.39717 1.48205 1.89680 1.94665 1.95886 2.31311 2.38593 2.92179 3.05572 3.28713 3.38196 3.46201 3.61939 3.73617 4.02957 4.22670 4.40070 4.48593 4.52442 4.58414 4.62323 4.81913 4.91437 4.96909 5.08397 5.11438 5.20065 5.42295 5.49415 5.58079 5.70271 6.21029 6.69526 6.70576 6.71214 7.36962 8.86557 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.019045 B = 0.006742 C = 0.006177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.860601 B = 4152.189042 C = 4531.990544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.246 4.246 3 C 0.220 3.780 4 N -0.993 5.993 5 C 0.224 3.776 6 C -0.239 4.239 7 C -0.181 4.181 8 S 2.613 3.387 9 O -0.981 6.981 10 O -0.987 6.987 11 C -0.544 4.544 12 C 0.008 3.992 13 C -0.537 4.537 14 H 0.047 0.953 15 C 0.043 3.957 16 N -0.890 5.890 17 Si 0.934 3.066 18 H -0.277 1.277 19 H -0.272 1.272 20 H -0.269 1.269 21 C -0.195 4.195 22 C -0.137 4.137 23 H 0.246 0.754 24 H 0.102 0.898 25 H 0.131 0.869 26 H 0.110 0.890 27 H 0.133 0.867 28 H 0.248 0.752 29 H 0.119 0.881 30 H 0.132 0.868 31 H 0.266 0.734 32 H 0.100 0.900 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.196 -10.545 -10.238 14.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.248 4.248 3 C 0.096 3.904 4 N -0.828 5.828 5 C 0.100 3.900 6 C -0.241 4.241 7 C -0.199 4.199 8 S 2.712 3.288 9 O -0.972 6.972 10 O -0.977 6.977 11 C -0.677 4.677 12 C 0.006 3.994 13 C -0.574 4.574 14 H 0.066 0.934 15 C -0.160 4.160 16 N -0.526 5.526 17 Si 0.759 3.241 18 H -0.203 1.203 19 H -0.196 1.196 20 H -0.193 1.193 21 C -0.233 4.233 22 C -0.176 4.176 23 H 0.262 0.738 24 H 0.120 0.880 25 H 0.149 0.851 26 H 0.127 0.873 27 H 0.151 0.849 28 H 0.265 0.735 29 H 0.138 0.862 30 H 0.150 0.850 31 H 0.075 0.925 32 H 0.119 0.881 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.886 -10.124 -9.997 14.255 hybrid contribution -0.563 1.082 0.248 1.245 sum 0.324 -9.042 -9.749 13.300 Atomic orbital electron populations 1.25740 0.96751 0.98761 0.97282 1.23863 0.95464 1.02283 1.03149 1.18317 0.83751 0.97707 0.90586 1.57729 1.81320 1.15750 1.27984 1.18385 0.90501 0.78476 1.02608 1.23955 0.97698 1.02233 1.00196 1.25774 0.96915 0.97249 0.99936 1.04852 0.77492 0.72743 0.73696 1.93476 1.58699 1.67687 1.77303 1.93462 1.83183 1.39959 1.81132 1.29857 1.19475 1.08482 1.09924 1.18425 1.02819 0.92611 0.85526 1.20692 0.92573 0.90269 1.53888 0.93444 1.25516 0.94879 1.02109 0.93466 1.70017 1.01385 1.33770 1.47450 0.85923 0.78539 0.80969 0.78709 1.20267 1.19634 1.19327 1.23249 0.96707 0.99299 1.03997 1.22516 0.92128 1.01586 1.01358 0.73793 0.88005 0.85102 0.87258 0.84949 0.73534 0.86218 0.84990 0.92502 0.88145 0.89935 0.91483 0.89258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.04 19.25 74.32 1.43 -2.61 16 2 C -0.25 -6.73 13.67 31.13 0.43 -6.30 16 3 C 0.22 6.08 6.13 84.57 0.52 6.60 16 4 N -0.99 -30.48 2.64 -535.57 -1.41 -31.89 16 5 C 0.22 5.49 5.73 84.57 0.48 5.97 16 6 C -0.24 -6.26 13.66 31.13 0.43 -5.83 16 7 C -0.18 -4.08 19.25 74.33 1.43 -2.65 16 8 S 2.61 107.99 5.11 -56.49 -0.29 107.70 16 9 O -0.98 -43.02 16.98 -127.65 -2.17 -45.19 16 10 O -0.99 -48.58 16.20 -127.65 -2.07 -50.64 16 11 C -0.54 -22.82 6.03 71.98 0.43 -22.39 16 12 C 0.01 0.41 1.32 -52.93 -0.07 0.34 16 13 C -0.54 -30.09 8.18 25.60 0.21 -29.88 16 14 H 0.05 2.77 7.83 -2.91 -0.02 2.74 16 15 C 0.04 2.40 5.38 84.65 0.46 2.86 16 16 N -0.89 -49.22 12.98 21.45 0.28 -48.94 16 17 Si 0.93 44.25 29.55 68.60 2.03 46.27 16 18 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 19 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 20 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 21 C -0.20 -8.38 9.96 30.62 0.30 -8.08 16 22 C -0.14 -6.11 9.49 30.62 0.29 -5.82 16 23 H 0.25 4.05 7.80 -4.42 -0.03 4.02 16 24 H 0.10 3.17 6.82 -2.39 -0.02 3.16 16 25 H 0.13 2.71 8.11 -2.39 -0.02 2.69 16 26 H 0.11 2.54 7.61 -2.39 -0.02 2.52 16 27 H 0.13 2.31 8.11 -2.38 -0.02 2.29 16 28 H 0.25 3.43 7.80 -4.42 -0.03 3.40 16 29 H 0.12 5.41 8.14 -2.39 -0.02 5.39 16 30 H 0.13 4.44 8.09 -2.39 -0.02 4.42 16 31 H 0.27 13.93 8.32 -92.71 -0.77 13.16 16 32 H 0.10 3.76 8.14 -2.39 -0.02 3.74 16 33 H 0.08 3.56 8.14 -2.39 -0.02 3.54 16 34 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 35 H 0.09 3.53 8.14 -2.39 -0.02 3.51 16 Total: -1.00 -72.27 334.01 3.78 -68.50 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: 1.07 Total: 21.99 kcal Atomic # 6 Polarization: -74.13 SS G_CDS: 6.34 Total: -67.79 kcal Atomic # 7 Polarization: -79.70 SS G_CDS: -1.13 Total: -80.84 kcal Atomic # 8 Polarization: -91.60 SS G_CDS: -4.24 Total: -95.84 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: 107.99 SS G_CDS: -0.29 Total: 107.70 kcal Total: -72.27 3.78 -68.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491704140.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.724 kcal (2) G-P(sol) polarization free energy of solvation -72.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds