Wall clock time and date at job start Wed Apr 15 2020 11:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38349 * 119.91083 * 2 1 4 4 C 1.38554 * 120.27769 * 179.97438 * 3 2 1 5 5 F 1.35100 * 119.95545 * 180.02562 * 4 3 2 6 6 C 1.38205 * 120.09903 * 0.02666 * 4 3 2 7 7 C 1.39588 * 119.81531 * 359.97438 * 6 4 3 8 8 C 1.47737 * 120.13343 * 179.97438 * 7 6 4 9 9 O 1.21469 * 119.99789 * 180.02562 * 8 7 6 10 10 O 1.34706 * 120.00244 * 0.02562 * 8 7 6 11 11 C 1.45194 * 117.00261 * 179.97438 * 10 8 7 12 12 C 1.50703 * 109.47519 * 180.02562 * 11 10 8 13 13 O 1.21292 * 119.99758 * 359.97438 * 12 11 10 14 14 N 1.34769 * 119.99828 * 180.02562 * 12 11 10 15 15 C 1.37100 * 119.99742 * 179.97438 * 14 12 11 16 16 H 1.08006 * 119.99950 * 359.97438 * 15 14 12 17 17 C 1.38951 * 120.00127 * 179.97438 * 15 14 12 18 18 N 1.31408 * 120.00196 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99905 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47150 * 60.00397 * 19 17 15 21 21 H 1.48497 * 109.47067 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47288 * 300.00338 * 19 17 15 23 23 C 1.37923 * 119.90660 * 179.97438 * 2 1 3 24 24 H 1.09006 * 109.47078 * 89.99349 * 1 2 3 25 25 H 1.08997 * 109.47437 * 209.99757 * 1 2 3 26 26 H 1.09000 * 109.46672 * 329.99918 * 1 2 3 27 27 H 1.07996 * 119.86155 * 359.97438 * 3 2 1 28 28 H 1.07999 * 120.09185 * 179.72112 * 6 4 3 29 29 H 1.09006 * 109.47248 * 300.00380 * 11 10 8 30 30 H 1.08995 * 109.47108 * 59.99682 * 11 10 8 31 31 H 0.96998 * 120.00738 * 359.97438 * 14 12 11 32 32 H 0.96993 * 120.00146 * 179.97438 * 18 17 15 33 33 H 1.08002 * 120.05317 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1969 1.1992 0.0000 4 6 3.5824 1.2081 0.0005 5 9 4.2495 2.3829 0.0011 6 6 4.2832 0.0169 0.0005 7 6 3.5912 -1.1954 0.0005 8 6 4.3332 -2.4729 -0.0001 9 8 3.7285 -3.5264 -0.0006 10 8 5.6802 -2.4695 -0.0001 11 6 6.3427 -3.7615 -0.0001 12 6 7.8363 -3.5603 0.0005 13 8 8.2970 -2.4383 0.0005 14 7 8.6599 -4.6270 0.0001 15 6 10.0186 -4.4440 0.0001 16 1 10.4289 -3.4449 0.0001 17 6 10.8678 -5.5438 0.0002 18 7 10.3687 -6.7594 -0.0002 19 14 12.7191 -5.2943 -0.0004 20 1 13.1166 -4.5341 1.2117 21 1 13.3967 -6.6156 -0.0008 22 1 13.1158 -4.5347 -1.2132 23 6 2.1947 -1.1956 0.0005 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6532 2.1323 -0.0004 28 1 5.3631 0.0239 -0.0036 29 1 6.0512 -4.3194 0.8899 30 1 6.0513 -4.3193 -0.8900 31 1 8.2915 -5.5243 -0.0003 32 1 10.9615 -7.5270 -0.0005 33 1 1.6541 -2.1305 0.0014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745566940.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:26 Heat of formation + Delta-G solvation = -146.689248 kcal Electronic energy + Delta-G solvation = -20507.509478 eV Core-core repulsion = 16833.780762 eV Total energy + Delta-G solvation = -3673.728716 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.09129 -40.59471 -39.10195 -38.06594 -36.14115 -34.02065 -33.29682 -31.40639 -31.12241 -28.53944 -27.38281 -25.12964 -24.10023 -22.18823 -20.79953 -19.61151 -18.10444 -18.06538 -17.22718 -16.47838 -16.39995 -16.36539 -15.97935 -15.79099 -15.42545 -14.55909 -14.18218 -14.02303 -13.87594 -13.72090 -13.64648 -13.04575 -12.51301 -12.47022 -12.20522 -11.93828 -11.93065 -11.74328 -11.62833 -11.12123 -10.58445 -10.49541 -10.47334 -10.29969 -9.60772 -9.33336 -8.98575 -8.54590 -8.09671 -6.50980 -3.93154 0.33551 0.84638 2.35847 2.56014 3.14957 3.22470 3.27125 3.36260 3.72226 3.86070 4.09436 4.27386 4.44114 4.68691 4.78137 4.86425 4.99664 5.07961 5.13789 5.22618 5.28037 5.49857 5.52674 5.66495 5.71278 5.72906 5.95132 5.98857 6.06442 6.48457 6.50308 7.46736 7.73279 7.93267 8.46973 9.05797 9.37740 9.87518 10.66165 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.033331 B = 0.003141 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.846479 B = 8913.269923 C = 9732.671064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.073 4.073 3 C -0.125 4.125 4 C 0.092 3.908 5 F -0.133 7.133 6 C -0.099 4.099 7 C -0.085 4.085 8 C 0.506 3.494 9 O -0.505 6.505 10 O -0.319 6.319 11 C 0.061 3.939 12 C 0.438 3.562 13 O -0.576 6.576 14 N -0.551 5.551 15 C -0.303 4.303 16 H 0.106 0.894 17 C 0.026 3.974 18 N -0.897 5.897 19 Si 0.935 3.065 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.272 1.272 23 C -0.068 4.068 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.141 0.859 28 H 0.159 0.841 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.395 0.605 32 H 0.275 0.725 33 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.663 10.480 -0.022 21.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.073 4.073 3 C -0.143 4.143 4 C 0.073 3.927 5 F -0.112 7.112 6 C -0.118 4.118 7 C -0.087 4.087 8 C 0.350 3.650 9 O -0.395 6.395 10 O -0.233 6.233 11 C -0.016 4.016 12 C 0.222 3.778 13 O -0.460 6.460 14 N -0.189 5.189 15 C -0.432 4.432 16 H 0.124 0.876 17 C -0.177 4.177 18 N -0.538 5.538 19 Si 0.761 3.239 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.197 1.197 23 C -0.086 4.086 24 H 0.095 0.905 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.159 0.841 28 H 0.176 0.824 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.229 0.771 32 H 0.085 0.915 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -18.354 10.751 -0.021 21.271 hybrid contribution 0.884 -0.511 -0.006 1.021 sum -17.470 10.240 -0.027 20.250 Atomic orbital electron populations 1.20817 0.89651 1.03504 1.03032 1.19654 0.96816 0.91545 0.99270 1.21273 0.92254 0.99566 1.01245 1.17505 0.90071 0.81331 1.03768 1.91541 1.80672 1.45066 1.93914 1.21641 1.02530 0.90092 0.97560 1.18916 0.93080 0.90492 1.06177 1.21038 0.81663 0.89110 0.73210 1.90828 1.69828 1.32921 1.45937 1.86585 1.18944 1.34980 1.82836 1.22808 0.92996 0.82081 1.03726 1.19284 0.86084 0.86281 0.86108 1.90564 1.76723 1.23415 1.55294 1.41687 1.06374 1.07060 1.63740 1.19684 0.80095 0.95120 1.48348 0.87639 1.25313 1.01049 0.94512 0.96823 1.69601 1.36704 0.97936 1.49521 0.85853 0.81398 0.77401 0.79219 1.19731 1.20854 1.19736 1.21220 0.91948 0.99039 0.96427 0.90484 0.90754 0.90994 0.84148 0.82382 0.89305 0.89299 0.77127 0.91544 0.83705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 10.01 36.01 0.36 -0.25 16 2 C -0.07 -0.62 5.87 -104.69 -0.61 -1.23 16 3 C -0.12 -1.11 9.67 -39.42 -0.38 -1.49 16 4 C 0.09 1.05 7.29 -39.48 -0.29 0.76 16 5 F -0.13 -1.62 17.26 2.25 0.04 -1.58 16 6 C -0.10 -1.28 9.60 -39.09 -0.38 -1.66 16 7 C -0.09 -1.13 5.87 -104.99 -0.62 -1.75 16 8 C 0.51 8.20 7.90 34.61 0.27 8.47 16 9 O -0.51 -8.75 16.14 -19.24 -0.31 -9.06 16 10 O -0.32 -5.96 9.01 -47.19 -0.42 -6.39 16 11 C 0.06 1.16 5.95 36.01 0.21 1.38 16 12 C 0.44 10.51 7.86 -10.99 -0.09 10.42 16 13 O -0.58 -15.93 16.08 -14.11 -0.23 -16.15 16 14 N -0.55 -13.89 5.29 -10.96 -0.06 -13.95 16 15 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 16 H 0.11 3.03 7.16 -52.48 -0.38 2.65 16 17 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 18 N -0.90 -24.01 13.05 55.50 0.72 -23.28 16 19 Si 0.93 20.69 29.55 -169.99 -5.02 15.67 16 20 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 21 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 22 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 23 C -0.07 -0.72 9.24 -39.17 -0.36 -1.08 16 24 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 26 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 27 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 28 H 0.16 2.21 7.61 -52.49 -0.40 1.81 16 29 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 30 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.40 9.41 7.90 -40.82 -0.32 9.09 16 32 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 33 H 0.15 1.41 7.65 -52.49 -0.40 1.01 16 LS Contribution 309.40 15.07 4.66 4.66 Total: -1.00 -31.83 309.40 -5.90 -37.73 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -3.16 Total: 6.71 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: -2.12 Total: 5.65 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.67 Total: -37.23 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -0.96 Total: -31.60 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.83 -5.90 -37.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745566940.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.963 kcal (2) G-P(sol) polarization free energy of solvation -31.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds