Wall clock time and date at job start Wed Apr 15 2020 11:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38349 * 119.91083 * 2 1 4 4 C 1.38554 * 120.27769 * 179.97438 * 3 2 1 5 5 F 1.35100 * 119.95545 * 180.02562 * 4 3 2 6 6 C 1.38205 * 120.09903 * 0.02666 * 4 3 2 7 7 C 1.39588 * 119.81531 * 359.97438 * 6 4 3 8 8 C 1.47737 * 120.13343 * 179.97438 * 7 6 4 9 9 O 1.21469 * 119.99789 * 180.02562 * 8 7 6 10 10 O 1.34706 * 120.00244 * 0.02562 * 8 7 6 11 11 C 1.45194 * 117.00261 * 179.97438 * 10 8 7 12 12 C 1.50703 * 109.47519 * 180.02562 * 11 10 8 13 13 O 1.21292 * 119.99758 * 359.97438 * 12 11 10 14 14 N 1.34769 * 119.99828 * 180.02562 * 12 11 10 15 15 C 1.37100 * 119.99742 * 179.97438 * 14 12 11 16 16 H 1.08006 * 119.99950 * 359.97438 * 15 14 12 17 17 C 1.38951 * 120.00127 * 179.97438 * 15 14 12 18 18 N 1.31408 * 120.00196 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99905 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47150 * 60.00397 * 19 17 15 21 21 H 1.48497 * 109.47067 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47288 * 300.00338 * 19 17 15 23 23 C 1.37923 * 119.90660 * 179.97438 * 2 1 3 24 24 H 1.09006 * 109.47078 * 89.99349 * 1 2 3 25 25 H 1.08997 * 109.47437 * 209.99757 * 1 2 3 26 26 H 1.09000 * 109.46672 * 329.99918 * 1 2 3 27 27 H 1.07996 * 119.86155 * 359.97438 * 3 2 1 28 28 H 1.07999 * 120.09185 * 179.72112 * 6 4 3 29 29 H 1.09006 * 109.47248 * 300.00380 * 11 10 8 30 30 H 1.08995 * 109.47108 * 59.99682 * 11 10 8 31 31 H 0.96998 * 120.00738 * 359.97438 * 14 12 11 32 32 H 0.96993 * 120.00146 * 179.97438 * 18 17 15 33 33 H 1.08002 * 120.05317 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1969 1.1992 0.0000 4 6 3.5824 1.2081 0.0005 5 9 4.2495 2.3829 0.0011 6 6 4.2832 0.0169 0.0005 7 6 3.5912 -1.1954 0.0005 8 6 4.3332 -2.4729 -0.0001 9 8 3.7285 -3.5264 -0.0006 10 8 5.6802 -2.4695 -0.0001 11 6 6.3427 -3.7615 -0.0001 12 6 7.8363 -3.5603 0.0005 13 8 8.2970 -2.4383 0.0005 14 7 8.6599 -4.6270 0.0001 15 6 10.0186 -4.4440 0.0001 16 1 10.4289 -3.4449 0.0001 17 6 10.8678 -5.5438 0.0002 18 7 10.3687 -6.7594 -0.0002 19 14 12.7191 -5.2943 -0.0004 20 1 13.1166 -4.5341 1.2117 21 1 13.3967 -6.6156 -0.0008 22 1 13.1158 -4.5347 -1.2132 23 6 2.1947 -1.1956 0.0005 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6532 2.1323 -0.0004 28 1 5.3631 0.0239 -0.0036 29 1 6.0512 -4.3194 0.8899 30 1 6.0513 -4.3193 -0.8900 31 1 8.2915 -5.5243 -0.0003 32 1 10.9615 -7.5270 -0.0005 33 1 1.6541 -2.1305 0.0014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745566940.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:24 Heat of formation + Delta-G solvation = -165.672716 kcal Electronic energy + Delta-G solvation = -20508.332663 eV Core-core repulsion = 16833.780762 eV Total energy + Delta-G solvation = -3674.551901 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 4.93 seconds Orbital eigenvalues (eV) -50.00715 -41.86012 -40.32311 -39.71306 -37.57369 -36.06222 -34.08607 -33.43897 -32.01694 -30.13099 -28.05249 -26.82787 -25.44349 -23.02775 -21.96820 -21.46974 -20.10661 -19.21127 -18.44200 -17.80832 -17.73342 -17.30597 -17.17859 -16.94804 -16.72738 -16.38439 -15.79601 -15.78322 -14.83587 -14.53191 -14.50270 -14.31862 -14.02530 -13.73783 -13.56849 -13.09647 -12.95635 -12.76229 -12.74599 -12.61708 -12.50747 -12.13786 -11.94797 -11.81467 -11.59462 -10.55198 -10.16847 -10.14185 -9.82321 -8.54174 -6.05086 -0.60865 0.00029 1.22437 1.24824 1.36258 1.42778 1.54144 1.84489 2.27765 2.43851 2.87882 3.08203 3.11242 3.45210 3.61560 3.87703 3.94334 4.02187 4.07882 4.11736 4.18883 4.38050 4.62644 4.77823 4.88696 4.90765 5.05400 5.12286 5.27417 5.33985 5.35090 5.69036 5.86411 6.39562 6.50533 7.00542 7.37011 7.90634 8.62640 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.033331 B = 0.003141 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.846479 B = 8913.269923 C = 9732.671064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.060 4.060 3 C -0.107 4.107 4 C 0.082 3.918 5 F -0.141 7.141 6 C -0.116 4.116 7 C -0.105 4.105 8 C 0.507 3.493 9 O -0.519 6.519 10 O -0.339 6.339 11 C 0.071 3.929 12 C 0.435 3.565 13 O -0.619 6.619 14 N -0.556 5.556 15 C -0.340 4.340 16 H 0.084 0.916 17 C -0.007 4.007 18 N -0.914 5.914 19 Si 0.998 3.002 20 H -0.270 1.270 21 H -0.268 1.268 22 H -0.270 1.270 23 C -0.064 4.064 24 H 0.091 0.909 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.175 0.825 28 H 0.135 0.865 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.401 0.599 32 H 0.282 0.718 33 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.640 10.849 -0.024 23.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.060 4.060 3 C -0.125 4.125 4 C 0.062 3.938 5 F -0.120 7.120 6 C -0.135 4.135 7 C -0.106 4.106 8 C 0.353 3.647 9 O -0.410 6.410 10 O -0.254 6.254 11 C -0.006 4.006 12 C 0.222 3.778 13 O -0.505 6.505 14 N -0.193 5.193 15 C -0.469 4.469 16 H 0.102 0.898 17 C -0.208 4.208 18 N -0.554 5.554 19 Si 0.821 3.179 20 H -0.195 1.195 21 H -0.193 1.193 22 H -0.195 1.195 23 C -0.083 4.083 24 H 0.109 0.891 25 H 0.101 0.899 26 H 0.110 0.890 27 H 0.192 0.808 28 H 0.153 0.847 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.235 0.765 32 H 0.091 0.909 33 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -20.360 11.097 -0.023 23.188 hybrid contribution 1.381 -0.581 -0.006 1.499 sum -18.979 10.516 -0.029 21.697 Atomic orbital electron populations 1.20939 0.86679 1.04954 1.04336 1.20051 0.98648 0.90349 0.96990 1.21654 0.90975 1.01235 0.98638 1.17644 0.91134 0.80434 1.04548 1.91521 1.81095 1.45258 1.94081 1.21479 1.01666 0.91113 0.99266 1.18841 0.93988 0.88920 1.08875 1.21524 0.80589 0.90202 0.72364 1.90804 1.69637 1.33615 1.46930 1.86589 1.20663 1.34726 1.83455 1.22595 0.89403 0.82812 1.05744 1.20073 0.88176 0.85271 0.84278 1.90530 1.78166 1.25004 1.56841 1.41716 1.06059 1.07637 1.63895 1.19691 0.81564 0.94778 1.50890 0.89806 1.26126 1.05211 0.93950 0.95546 1.69658 1.38341 0.98471 1.48951 0.84920 0.75971 0.77912 0.79141 1.19496 1.19254 1.19506 1.21437 0.90657 1.00540 0.95619 0.89058 0.89947 0.89024 0.80781 0.84684 0.87171 0.87162 0.76474 0.90878 0.82775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 10.01 71.24 0.71 -0.01 16 2 C -0.06 -0.84 5.87 -19.91 -0.12 -0.95 16 3 C -0.11 -1.58 9.67 22.37 0.22 -1.37 16 4 C 0.08 1.79 7.29 22.34 0.16 1.95 16 5 F -0.14 -3.38 17.26 44.97 0.78 -2.60 16 6 C -0.12 -3.10 9.60 22.59 0.22 -2.88 16 7 C -0.10 -2.78 5.87 -20.10 -0.12 -2.90 16 8 C 0.51 16.64 7.90 70.33 0.56 17.19 16 9 O -0.52 -17.78 16.14 19.94 0.32 -17.45 16 10 O -0.34 -13.05 9.01 -49.78 -0.45 -13.50 16 11 C 0.07 2.73 5.95 71.24 0.42 3.16 16 12 C 0.44 21.55 7.86 87.66 0.69 22.24 16 13 O -0.62 -35.72 16.08 15.73 0.25 -35.46 16 14 N -0.56 -28.72 5.29 -306.98 -1.62 -30.34 16 15 C -0.34 -19.24 9.68 84.04 0.81 -18.42 16 16 H 0.08 5.02 7.16 -2.91 -0.02 5.00 16 17 C -0.01 -0.39 5.50 84.93 0.47 0.08 16 18 N -0.91 -48.64 13.05 21.66 0.28 -48.36 16 19 Si 1.00 42.21 29.55 68.60 2.03 44.24 16 20 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 21 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 22 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 23 C -0.06 -1.25 9.24 22.54 0.21 -1.05 16 24 H 0.09 0.42 8.14 -2.38 -0.02 0.40 16 25 H 0.08 0.46 8.08 -2.39 -0.02 0.44 16 26 H 0.09 0.29 8.08 -2.39 -0.02 0.27 16 27 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 28 H 0.14 4.14 7.61 -2.91 -0.02 4.12 16 29 H 0.11 3.74 8.14 -2.38 -0.02 3.72 16 30 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 31 H 0.40 19.41 7.90 -92.71 -0.73 18.68 16 32 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 33 H 0.15 2.70 7.65 -2.91 -0.02 2.67 16 Total: -1.00 -70.13 309.40 6.25 -63.87 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 0.43 Total: 22.55 kcal Atomic # 6 Polarization: 12.82 SS G_CDS: 4.23 Total: 17.05 kcal Atomic # 7 Polarization: -77.36 SS G_CDS: -1.34 Total: -78.70 kcal Atomic # 8 Polarization: -66.54 SS G_CDS: 0.13 Total: -66.41 kcal Atomic # 9 Polarization: -3.38 SS G_CDS: 0.78 Total: -2.60 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -70.13 6.25 -63.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745566940.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.800 kcal (2) G-P(sol) polarization free energy of solvation -70.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.93 seconds