Wall clock time and date at job start Wed Apr 15 2020 11:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28774 * 125.44905 * 2 1 4 4 N 1.28998 * 108.73114 * 179.97438 * 3 2 1 5 5 C 1.33324 * 107.34910 * 0.02562 * 4 3 2 6 6 C 1.50699 * 126.54752 * 179.97438 * 5 4 3 7 7 S 1.81005 * 109.47167 * 90.02295 * 6 5 4 8 8 C 1.76199 * 99.99850 * 180.02562 * 7 6 5 9 9 N 1.32387 * 126.26244 * 0.02562 * 8 7 6 10 10 N 1.28507 * 110.20289 * 179.97438 * 9 8 7 11 11 C 1.33103 * 109.75061 * 359.97438 * 10 9 8 12 12 C 1.39770 * 126.56666 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00198 * 180.02562 * 12 11 10 14 14 C 1.40084 * 119.99860 * 0.03103 * 12 11 10 15 15 N 1.30806 * 120.00476 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99920 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46992 * 89.99969 * 16 14 12 18 18 H 1.48493 * 109.47157 * 209.99948 * 16 14 12 19 19 H 1.48505 * 109.47208 * 330.00322 * 16 14 12 20 20 N 1.36671 * 126.25423 * 179.71841 * 8 7 6 21 21 C 1.46498 * 127.15447 * 0.02815 * 20 8 7 22 22 N 1.28882 * 125.44857 * 179.97438 * 2 1 3 23 23 H 1.08998 * 109.47213 * 269.99674 * 1 2 3 24 24 H 1.08993 * 109.47056 * 30.00500 * 1 2 3 25 25 H 1.09000 * 109.47118 * 150.00016 * 1 2 3 26 26 H 1.09004 * 109.47107 * 210.02455 * 6 5 4 27 27 H 1.09008 * 109.47263 * 330.02296 * 6 5 4 28 28 H 0.97002 * 120.00658 * 179.97438 * 15 14 12 29 29 H 1.09004 * 109.47272 * 90.02670 * 21 20 8 30 30 H 1.09006 * 109.47555 * 210.03119 * 21 20 8 31 31 H 1.09001 * 109.47334 * 330.03172 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2119 1.0490 0.0000 4 7 3.4473 0.6780 0.0005 5 6 3.4620 -0.6552 0.0003 6 6 4.6825 -1.5392 0.0002 7 16 5.1707 -1.8940 1.7067 8 6 6.5787 -2.9127 1.4166 9 7 7.0628 -3.2614 0.2348 10 7 8.0972 -4.0096 0.3821 11 6 8.3425 -4.1878 1.6782 12 6 9.3814 -4.9402 2.2332 13 1 9.4815 -5.0137 3.3061 14 6 10.2929 -5.5988 1.3980 15 7 10.1716 -5.5102 0.0986 16 14 11.6819 -6.6038 2.1398 17 1 11.2295 -8.0047 2.3357 18 1 12.8507 -6.5846 1.2240 19 1 12.0697 -6.0213 3.4497 20 7 7.3743 -3.4826 2.3706 21 6 7.2304 -3.3719 3.8243 22 7 2.2125 -1.0499 0.0005 23 1 -0.3633 -0.0001 1.0276 24 1 -0.3633 0.8899 -0.5139 25 1 -0.3633 -0.8900 -0.5138 26 1 4.4548 -2.4729 -0.5142 27 1 5.4990 -1.0313 -0.5131 28 1 10.8030 -5.9660 -0.4798 29 1 6.5936 -4.1780 4.1888 30 1 8.2119 -3.4439 4.2932 31 1 6.7787 -2.4115 4.0727 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116920621.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:39 Heat of formation + Delta-G solvation = 203.318890 kcal Electronic energy + Delta-G solvation = -18535.851034 eV Core-core repulsion = 15404.558144 eV Total energy + Delta-G solvation = -3131.292889 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.075 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.42142 -40.52415 -35.46541 -33.74474 -33.65917 -33.30483 -30.32229 -29.32083 -27.77818 -26.48738 -25.52135 -23.23024 -22.52603 -20.86042 -20.45854 -17.72631 -17.64129 -17.36401 -16.29936 -15.45995 -14.89612 -14.76620 -14.50750 -14.19392 -14.00781 -13.48402 -13.41017 -13.13938 -12.97521 -12.30407 -12.23561 -11.95741 -11.44845 -11.30628 -11.06565 -11.01325 -10.95345 -10.73140 -10.38001 -9.90009 -9.75274 -9.63260 -8.72416 -8.45559 -8.40565 -6.87889 -6.65687 -4.58824 1.05450 1.49757 1.81201 2.49804 2.74949 2.91210 3.06543 3.10085 3.34202 3.73383 3.86859 4.11086 4.22333 4.40960 4.54044 4.65367 4.83331 5.31576 5.33409 5.51767 5.54879 5.67600 5.88139 5.88741 6.02675 6.04495 6.73912 6.87836 7.22959 7.46968 7.86345 8.16723 8.26404 8.69094 8.84315 10.26746 10.61277 Molecular weight = 281.08amu Principal moments of inertia in cm(-1) A = 0.051273 B = 0.003410 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.965290 B = 8209.495144 C = 8492.371585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.144 5.144 3 N -0.066 5.066 4 N -0.267 5.267 5 C 0.189 3.811 6 C -0.002 4.002 7 S -0.021 6.021 8 C 0.042 3.958 9 N -0.283 5.283 10 N -0.332 5.332 11 C 0.348 3.652 12 C -0.446 4.446 13 H 0.085 0.915 14 C 0.078 3.922 15 N -0.735 5.735 16 Si 0.921 3.079 17 H -0.269 1.269 18 H -0.275 1.275 19 H -0.262 1.262 20 N -0.514 5.514 21 C 0.101 3.899 22 N -0.293 5.293 23 H 0.101 0.899 24 H 0.111 0.889 25 H 0.111 0.889 26 H 0.121 0.879 27 H 0.124 0.876 28 H 0.280 0.720 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.818 6.662 3.188 16.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.057 5.057 3 N -0.059 5.059 4 N -0.139 5.139 5 C -0.094 4.094 6 C -0.153 4.153 7 S 0.204 5.796 8 C -0.330 4.330 9 N -0.129 5.129 10 N -0.179 5.179 11 C 0.104 3.896 12 C -0.486 4.486 13 H 0.103 0.897 14 C -0.148 4.148 15 N -0.359 5.359 16 Si 0.745 3.255 17 H -0.194 1.194 18 H -0.200 1.200 19 H -0.186 1.186 20 N -0.216 5.216 21 C -0.044 4.044 22 N -0.145 5.145 23 H 0.120 0.880 24 H 0.130 0.870 25 H 0.129 0.871 26 H 0.139 0.861 27 H 0.142 0.858 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.529 7.448 2.433 17.394 hybrid contribution 1.260 -1.280 0.699 1.928 sum -14.269 6.168 3.132 15.858 Atomic orbital electron populations 1.22413 0.69189 1.06774 1.06015 1.50045 1.10700 1.01006 1.43903 1.78962 0.96522 1.14379 1.16057 1.75898 1.09619 1.10938 1.17484 1.24726 0.92261 0.90249 1.02174 1.21367 0.93266 1.01029 0.99682 1.84570 1.28067 1.60231 1.06725 1.25199 1.04168 1.13602 0.90030 1.74529 1.07819 1.11595 1.18993 1.75456 1.10713 1.19616 1.12145 1.21618 0.88991 0.91775 0.87199 1.18115 1.08226 1.27850 0.94448 0.89733 1.25800 0.98412 0.95984 0.94555 1.70001 1.31566 1.30761 1.03594 0.86114 0.79698 0.79986 0.79718 1.19367 1.19970 1.18642 1.46003 1.25758 1.44215 1.05668 1.21507 1.02685 1.01243 0.78969 1.74758 1.03148 1.14907 1.21648 0.88048 0.87027 0.87094 0.86095 0.85755 0.90919 0.92507 0.90261 0.91542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.45 11.63 59.85 0.70 1.15 16 2 N -0.14 -1.66 4.40 -16.70 -0.07 -1.73 16 3 N -0.07 -0.91 13.25 60.35 0.80 -0.11 16 4 N -0.27 -4.34 12.50 32.45 0.41 -3.93 16 5 C 0.19 3.00 7.62 -156.62 -1.19 1.80 16 6 C 0.00 -0.03 5.85 36.00 0.21 0.18 16 7 S -0.02 -0.39 21.77 -107.50 -2.34 -2.73 16 8 C 0.04 1.00 8.09 -87.28 -0.71 0.30 16 9 N -0.28 -7.71 11.62 30.89 0.36 -7.35 16 10 N -0.33 -9.94 10.48 31.26 0.33 -9.61 16 11 C 0.35 9.71 7.53 -154.81 -1.17 8.54 16 12 C -0.45 -11.76 9.04 -38.32 -0.35 -12.11 16 13 H 0.08 2.01 7.31 -52.49 -0.38 1.63 16 14 C 0.08 1.99 5.50 -17.30 -0.10 1.89 16 15 N -0.74 -20.11 11.94 55.56 0.66 -19.45 16 16 Si 0.92 18.41 29.56 -169.99 -5.03 13.39 16 17 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 18 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 19 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 20 N -0.51 -12.44 3.26 -123.18 -0.40 -12.84 16 21 C 0.10 1.85 10.87 59.85 0.65 2.50 16 22 N -0.29 -4.16 12.13 32.47 0.39 -3.77 16 23 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 24 H 0.11 0.27 8.14 -51.93 -0.42 -0.16 16 25 H 0.11 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.12 2.06 8.14 -51.91 -0.42 1.64 16 27 H 0.12 2.16 8.14 -51.91 -0.42 1.74 16 28 H 0.28 6.89 8.30 -40.82 -0.34 6.55 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.08 1.36 7.54 -51.93 -0.39 0.97 16 31 H 0.07 1.08 7.85 -51.93 -0.41 0.67 16 LS Contribution 298.20 15.07 4.49 4.49 Total: -1.00 -35.37 298.20 -5.20 -40.57 By element: Atomic # 1 Polarization: 1.66 SS G_CDS: -2.85 Total: -1.19 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -1.95 Total: 4.26 kcal Atomic # 7 Polarization: -61.26 SS G_CDS: 2.47 Total: -58.79 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.03 Total: 13.39 kcal Atomic # 16 Polarization: -0.39 SS G_CDS: -2.34 Total: -2.73 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -35.37 -5.20 -40.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116920621.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 243.886 kcal (2) G-P(sol) polarization free energy of solvation -35.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 208.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 203.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds