Wall clock time and date at job start Wed Apr 15 2020 11:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28774 * 125.44905 * 2 1 4 4 N 1.28998 * 108.73114 * 179.97438 * 3 2 1 5 5 C 1.33324 * 107.34910 * 0.02562 * 4 3 2 6 6 C 1.50699 * 126.54752 * 179.97438 * 5 4 3 7 7 S 1.81005 * 109.47167 * 90.02295 * 6 5 4 8 8 C 1.76199 * 99.99850 * 180.02562 * 7 6 5 9 9 N 1.32387 * 126.26244 * 0.02562 * 8 7 6 10 10 N 1.28507 * 110.20289 * 179.97438 * 9 8 7 11 11 C 1.33103 * 109.75061 * 359.97438 * 10 9 8 12 12 C 1.39770 * 126.56666 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00198 * 180.02562 * 12 11 10 14 14 C 1.40084 * 119.99860 * 0.03103 * 12 11 10 15 15 N 1.30806 * 120.00476 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99920 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46992 * 89.99969 * 16 14 12 18 18 H 1.48493 * 109.47157 * 209.99948 * 16 14 12 19 19 H 1.48505 * 109.47208 * 330.00322 * 16 14 12 20 20 N 1.36671 * 126.25423 * 179.71841 * 8 7 6 21 21 C 1.46498 * 127.15447 * 0.02815 * 20 8 7 22 22 N 1.28882 * 125.44857 * 179.97438 * 2 1 3 23 23 H 1.08998 * 109.47213 * 269.99674 * 1 2 3 24 24 H 1.08993 * 109.47056 * 30.00500 * 1 2 3 25 25 H 1.09000 * 109.47118 * 150.00016 * 1 2 3 26 26 H 1.09004 * 109.47107 * 210.02455 * 6 5 4 27 27 H 1.09008 * 109.47263 * 330.02296 * 6 5 4 28 28 H 0.97002 * 120.00658 * 179.97438 * 15 14 12 29 29 H 1.09004 * 109.47272 * 90.02670 * 21 20 8 30 30 H 1.09006 * 109.47555 * 210.03119 * 21 20 8 31 31 H 1.09001 * 109.47334 * 330.03172 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2119 1.0490 0.0000 4 7 3.4473 0.6780 0.0005 5 6 3.4620 -0.6552 0.0003 6 6 4.6825 -1.5392 0.0002 7 16 5.1707 -1.8940 1.7067 8 6 6.5787 -2.9127 1.4166 9 7 7.0628 -3.2614 0.2348 10 7 8.0972 -4.0096 0.3821 11 6 8.3425 -4.1878 1.6782 12 6 9.3814 -4.9402 2.2332 13 1 9.4815 -5.0137 3.3061 14 6 10.2929 -5.5988 1.3980 15 7 10.1716 -5.5102 0.0986 16 14 11.6819 -6.6038 2.1398 17 1 11.2295 -8.0047 2.3357 18 1 12.8507 -6.5846 1.2240 19 1 12.0697 -6.0213 3.4497 20 7 7.3743 -3.4826 2.3706 21 6 7.2304 -3.3719 3.8243 22 7 2.2125 -1.0499 0.0005 23 1 -0.3633 -0.0001 1.0276 24 1 -0.3633 0.8899 -0.5139 25 1 -0.3633 -0.8900 -0.5138 26 1 4.4548 -2.4729 -0.5142 27 1 5.4990 -1.0313 -0.5131 28 1 10.8030 -5.9660 -0.4798 29 1 6.5936 -4.1780 4.1888 30 1 8.2119 -3.4439 4.2932 31 1 6.7787 -2.4115 4.0727 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116920621.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:37 Heat of formation + Delta-G solvation = 178.404843 kcal Electronic energy + Delta-G solvation = -18536.931388 eV Core-core repulsion = 15404.558144 eV Total energy + Delta-G solvation = -3132.373243 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.075 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -45.49750 -42.46041 -36.43359 -35.61880 -35.17810 -34.77392 -31.52172 -31.09819 -28.78612 -28.17475 -27.37884 -24.22028 -23.68892 -22.79300 -22.29981 -19.28016 -18.71389 -18.59952 -17.86729 -17.24394 -16.58783 -16.27104 -15.94899 -15.55580 -15.23587 -14.84532 -14.48459 -14.21970 -13.92376 -13.82864 -13.79475 -13.16260 -12.98962 -12.91920 -12.75945 -12.27545 -12.14367 -12.05976 -11.95802 -11.71603 -11.43746 -11.08257 -10.58679 -10.37177 -10.29465 -8.60035 -8.53115 -6.58095 -0.12348 0.20017 0.89979 1.05683 1.19836 1.36239 1.43945 1.60092 1.62743 2.19984 2.45260 2.50693 2.58397 3.07731 3.35361 3.92599 4.07906 4.10370 4.25558 4.30472 4.46682 4.51497 4.57836 4.63326 4.72173 4.87683 4.96310 5.13081 5.32899 5.56589 6.02335 6.23071 6.76838 6.92400 7.16798 8.42258 8.63552 Molecular weight = 281.08amu Principal moments of inertia in cm(-1) A = 0.051273 B = 0.003410 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.965290 B = 8209.495144 C = 8492.371585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.122 5.122 3 N -0.070 5.070 4 N -0.296 5.296 5 C 0.176 3.824 6 C 0.002 3.998 7 S 0.026 5.974 8 C 0.052 3.948 9 N -0.324 5.324 10 N -0.387 5.387 11 C 0.320 3.680 12 C -0.470 4.470 13 H 0.104 0.896 14 C 0.029 3.971 15 N -0.786 5.786 16 Si 1.007 2.993 17 H -0.261 1.261 18 H -0.272 1.272 19 H -0.248 1.248 20 N -0.520 5.520 21 C 0.092 3.908 22 N -0.296 5.296 23 H 0.126 0.874 24 H 0.139 0.861 25 H 0.130 0.870 26 H 0.118 0.882 27 H 0.116 0.884 28 H 0.285 0.715 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.244 6.881 5.064 18.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.037 5.037 3 N -0.063 5.063 4 N -0.167 5.167 5 C -0.107 4.107 6 C -0.150 4.150 7 S 0.250 5.750 8 C -0.322 4.322 9 N -0.169 5.169 10 N -0.233 5.233 11 C 0.074 3.926 12 C -0.510 4.510 13 H 0.122 0.878 14 C -0.192 4.192 15 N -0.411 5.411 16 Si 0.826 3.174 17 H -0.186 1.186 18 H -0.196 1.196 19 H -0.171 1.171 20 N -0.222 5.222 21 C -0.050 4.050 22 N -0.149 5.149 23 H 0.144 0.856 24 H 0.157 0.843 25 H 0.149 0.851 26 H 0.136 0.864 27 H 0.134 0.866 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.986 7.696 4.325 19.143 hybrid contribution 1.362 -1.202 0.129 1.821 sum -15.624 6.494 4.454 17.497 Atomic orbital electron populations 1.23155 0.65395 1.09180 1.08388 1.50661 1.12449 0.99761 1.40788 1.78887 0.96085 1.14856 1.16460 1.75859 1.11043 1.11106 1.18728 1.24359 0.92341 0.90128 1.03918 1.21254 0.93941 1.01204 0.98563 1.84351 1.24732 1.58114 1.07768 1.26169 1.04597 1.11904 0.89524 1.74407 1.08482 1.13229 1.20787 1.75319 1.12381 1.21532 1.14109 1.22034 0.90357 0.92875 0.87355 1.18641 1.08477 1.28238 0.95650 0.87759 1.26988 1.00942 0.96607 0.94671 1.70147 1.33141 1.32272 1.05582 0.84848 0.75497 0.77984 0.79105 1.18560 1.19633 1.17070 1.46340 1.24818 1.43286 1.07753 1.21873 1.04123 1.03266 0.75784 1.74721 1.02729 1.15848 1.21632 0.85552 0.84309 0.85143 0.86393 0.86613 0.90484 0.90606 0.89122 0.89258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.44 11.63 127.77 1.49 1.93 16 2 N -0.12 -2.50 4.40 -206.74 -0.91 -3.41 16 3 N -0.07 -1.81 13.25 37.02 0.49 -1.32 16 4 N -0.30 -9.39 12.50 -51.26 -0.64 -10.03 16 5 C 0.18 5.45 7.62 138.55 1.06 6.50 16 6 C 0.00 0.07 5.85 71.24 0.42 0.49 16 7 S 0.03 0.94 21.77 -56.49 -1.23 -0.28 16 8 C 0.05 2.52 8.09 179.18 1.45 3.97 16 9 N -0.32 -18.33 11.62 -56.17 -0.65 -18.98 16 10 N -0.39 -24.17 10.48 -55.02 -0.58 -24.74 16 11 C 0.32 18.26 7.53 133.23 1.00 19.27 16 12 C -0.47 -25.02 9.04 23.09 0.21 -24.81 16 13 H 0.10 4.89 7.31 -2.91 -0.02 4.87 16 14 C 0.03 1.48 5.50 85.29 0.47 1.95 16 15 N -0.79 -44.51 11.94 21.85 0.26 -44.25 16 16 Si 1.01 37.54 29.56 68.60 2.03 39.57 16 17 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 18 H -0.27 -9.86 7.11 99.48 0.71 -9.16 16 19 H -0.25 -8.54 7.11 99.48 0.71 -7.83 16 20 N -0.52 -25.18 3.26 -543.62 -1.77 -26.95 16 21 C 0.09 3.21 10.87 127.77 1.39 4.60 16 22 N -0.30 -7.91 12.13 -51.20 -0.62 -8.54 16 23 H 0.13 0.24 8.14 -2.39 -0.02 0.22 16 24 H 0.14 0.13 8.14 -2.39 -0.02 0.11 16 25 H 0.13 0.34 8.14 -2.39 -0.02 0.32 16 26 H 0.12 4.10 8.14 -2.39 -0.02 4.08 16 27 H 0.12 4.16 8.14 -2.39 -0.02 4.14 16 28 H 0.28 14.54 8.30 -92.71 -0.77 13.77 16 29 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 30 H 0.09 2.94 7.54 -2.38 -0.02 2.92 16 31 H 0.09 2.68 7.85 -2.39 -0.02 2.66 16 Total: -1.00 -80.26 298.20 5.03 -75.23 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: 1.18 Total: 9.80 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: 7.48 Total: 13.90 kcal Atomic # 7 Polarization: -133.80 SS G_CDS: -4.42 Total: -138.22 kcal Atomic # 14 Polarization: 37.54 SS G_CDS: 2.03 Total: 39.57 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -1.23 Total: -0.28 kcal Total: -80.26 5.03 -75.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116920621.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 253.632 kcal (2) G-P(sol) polarization free energy of solvation -80.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 173.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 178.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds