Wall clock time and date at job start Wed Apr 15 2020 11:45:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45197 * 1
3 3 C 1.34229 * 117.00145 * 2 1
4 4 O 1.20829 * 120.00016 * 359.97438 * 3 2 1
5 5 C 1.50703 * 119.99948 * 179.97438 * 3 2 1
6 6 N 1.46503 * 109.46979 * 179.97438 * 5 3 2
7 7 C 1.36889 * 119.99928 * 270.00102 * 6 5 3
8 8 H 1.07997 * 119.99779 * 139.21058 * 7 6 5
9 9 C 1.39038 * 120.00364 * 319.20879 * 7 6 5
10 10 N 1.31365 * 119.99974 * 161.59467 * 9 7 6
11 11 Si 1.86799 * 119.99653 * 341.59912 * 9 7 6
12 12 H 1.48499 * 109.47255 * 95.26816 * 11 9 7
13 13 H 1.48503 * 109.46586 * 215.26257 * 11 9 7
14 14 H 1.48499 * 109.47230 * 335.25916 * 11 9 7
15 15 C 1.34780 * 119.99676 * 90.00380 * 6 5 3
16 16 O 1.21601 * 119.99777 * 3.58099 * 15 6 5
17 17 C 1.47611 * 119.99559 * 183.58181 * 15 6 5
18 18 C 1.39713 * 120.12927 * 327.65739 * 17 15 6
19 19 C 1.37813 * 119.87361 * 180.25281 * 18 17 15
20 20 C 1.38666 * 120.12957 * 359.47581 * 19 18 17
21 21 F 1.35094 * 119.88016 * 180.27689 * 20 19 18
22 22 C 1.38673 * 120.24433 * 0.25466 * 20 19 18
23 23 C 1.37821 * 120.13119 * 359.97438 * 22 20 19
24 24 H 1.08998 * 109.46971 * 60.00090 * 1 2 3
25 25 H 1.09001 * 109.47507 * 179.97438 * 1 2 3
26 26 H 1.08998 * 109.47247 * 300.00222 * 1 2 3
27 27 H 1.09007 * 109.46945 * 60.00211 * 5 3 2
28 28 H 1.08993 * 109.47494 * 300.00419 * 5 3 2
29 29 H 0.97000 * 120.00425 * 179.97438 * 10 9 7
30 30 H 1.08006 * 120.06202 * 0.02562 * 18 17 15
31 31 H 1.08000 * 119.93517 * 179.74965 * 19 18 17
32 32 H 1.08005 * 119.93233 * 180.02562 * 22 20 19
33 33 H 1.07998 * 120.06258 * 180.02562 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1960 0.0000
4 8 1.4033 2.2093 -0.0005
5 6 3.5664 1.2748 0.0006
6 7 3.9818 2.6797 -0.0002
7 6 4.1763 3.3353 -1.1860
8 1 3.8408 4.3554 -1.3004
9 6 4.8058 2.6878 -2.2432
10 7 4.6797 3.1514 -3.4659
11 14 5.8306 1.1589 -1.9249
12 1 4.9990 -0.0504 -2.1514
13 1 6.9927 1.1407 -2.8494
14 1 6.3149 1.1710 -0.5212
15 6 4.1724 3.3266 1.1668
16 8 4.0632 2.7272 2.2191
17 6 4.5137 4.7627 1.1672
18 6 5.2741 5.3031 0.1271
19 6 5.5941 6.6436 0.1355
20 6 5.1539 7.4578 1.1679
21 9 5.4659 8.7723 1.1682
22 6 4.3942 6.9280 2.2000
23 6 4.0720 5.5880 2.2045
24 1 -0.3633 0.5138 -0.8900
25 1 -0.3634 -1.0276 -0.0005
26 1 -0.3634 0.5139 0.8899
27 1 3.9564 0.7805 -0.8892
28 1 3.9558 0.7808 0.8907
29 1 5.1192 2.6999 -4.2035
30 1 5.6135 4.6708 -0.6801
31 1 6.1852 7.0615 -0.6659
32 1 4.0536 7.5669 3.0014
33 1 3.4799 5.1766 3.0086
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000120632551.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 15 2020 11:45:40
Heat of formation + Delta-G solvation = -114.124839 kcal
Electronic energy + Delta-G solvation = -22062.555572 eV
Core-core repulsion = 18390.238955 eV
Total energy + Delta-G solvation = -3672.316617 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 281.090 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-48.60016 -40.19832 -39.29674 -37.50984 -35.97563 -35.08684 -32.23814 -30.85531
-30.45907 -28.63649 -26.59595 -25.29268 -22.75216 -22.46200 -20.94102 -19.47453
-18.09312 -17.36706 -17.11829 -16.84441 -15.96826 -15.93318 -15.57550 -15.28075
-15.02559 -14.75131 -13.99416 -13.71850 -13.40006 -13.15230 -13.07478 -12.81837
-12.69908 -12.57622 -11.94908 -11.87831 -11.66478 -11.61830 -11.14996 -10.74296
-10.49513 -10.40462 -10.20530 -9.96597 -9.49794 -8.94019 -8.65252 -8.21245
-8.09620 -6.69045 -4.34503 1.31051 1.74182 2.76648 2.87274 2.92103
3.08416 3.11295 3.53099 3.88210 4.07289 4.27295 4.59316 4.75944
5.20619 5.25734 5.30759 5.36896 5.39812 5.51512 5.61520 5.73500
5.77196 5.82609 5.86257 6.34086 6.42550 6.54934 6.75987 6.78646
6.97353 6.99789 7.32989 7.78190 8.02605 8.30850 8.64979 9.00558
9.32503 10.38535
Molecular weight = 281.09amu
Principal moments of inertia in cm(-1)
A = 0.016624 B = 0.006753 C = 0.005449
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1683.910513 B = 4145.243417 C = 5137.200282
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.037 3.963
2 O -0.369 6.369
3 C 0.449 3.551
4 O -0.487 6.487
5 C 0.107 3.893
6 N -0.442 5.442
7 C -0.350 4.350
8 H 0.115 0.885
9 C 0.066 3.934
10 N -0.844 5.844
11 Si 0.861 3.139
12 H -0.267 1.267
13 H -0.278 1.278
14 H -0.253 1.253
15 C 0.538 3.462
16 O -0.585 6.585
17 C -0.112 4.112
18 C -0.036 4.036
19 C -0.172 4.172
20 C 0.102 3.898
21 F -0.147 7.147
22 C -0.176 4.176
23 C -0.048 4.048
24 H 0.060 0.940
25 H 0.095 0.905
26 H 0.058 0.942
27 H 0.106 0.894
28 H 0.116 0.884
29 H 0.280 0.720
30 H 0.177 0.823
31 H 0.134 0.866
32 H 0.131 0.869
33 H 0.133 0.867
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.727 -0.941 4.552 4.705
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.058 4.058
2 O -0.286 6.286
3 C 0.289 3.711
4 O -0.372 6.372
5 C -0.018 4.018
6 N -0.162 5.162
7 C -0.477 4.477
8 H 0.133 0.867
9 C -0.143 4.143
10 N -0.478 5.478
11 Si 0.687 3.313
12 H -0.194 1.194
13 H -0.204 1.204
14 H -0.176 1.176
15 C 0.329 3.671
16 O -0.469 6.469
17 C -0.115 4.115
18 C -0.054 4.054
19 C -0.191 4.191
20 C 0.083 3.917
21 F -0.126 7.126
22 C -0.194 4.194
23 C -0.067 4.067
24 H 0.079 0.921
25 H 0.113 0.887
26 H 0.077 0.923
27 H 0.124 0.876
28 H 0.134 0.866
29 H 0.091 0.909
30 H 0.194 0.806
31 H 0.152 0.848
32 H 0.149 0.851
33 H 0.151 0.849
Dipole moment (debyes) X Y Z Total
from point charges -0.968 -0.900 4.825 5.003
hybrid contribution 0.124 -0.430 -0.291 0.534
sum -0.844 -1.330 4.534 4.799
Atomic orbital electron populations
1.23147 0.77410 1.02902 1.02307 1.86516 1.22764 1.34406 1.84905
1.24664 0.92756 0.81273 0.72398 1.90630 1.66557 1.36219 1.43805
1.21389 0.87017 0.88236 1.05176 1.43211 1.58031 1.08438 1.06512
1.19249 1.39239 1.01089 0.88098 0.86738 1.25400 0.96207 0.98097
0.94634 1.69708 1.38900 1.40519 0.98643 0.87125 0.81124 0.82756
0.80318 1.19376 1.20394 1.17619 1.18138 0.78827 0.86937 0.83201
1.90656 1.56283 1.68414 1.31567 1.19845 1.01511 0.93912 0.96251
1.22367 0.92131 0.94076 0.96782 1.21188 1.04276 0.94658 0.98973
1.17990 0.99187 0.77623 0.96907 1.91450 1.91407 1.33141 1.96584
1.20875 1.02804 0.96219 0.99539 1.21005 0.96810 0.91792 0.97099
0.92145 0.88662 0.92295 0.87634 0.86617 0.90939 0.80590 0.84807
0.85102 0.84882
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.51 10.56 101.05 1.07 1.57 16
2 O -0.37 -6.65 10.56 -39.25 -0.41 -7.07 16
3 C 0.45 9.60 8.02 36.01 0.29 9.89 16
4 O -0.49 -11.74 16.18 -18.75 -0.30 -12.04 16
5 C 0.11 2.28 4.79 -5.19 -0.02 2.25 16
6 N -0.44 -10.30 1.61 -117.25 -0.19 -10.49 16
7 C -0.35 -8.50 6.57 -15.00 -0.10 -8.60 16
8 H 0.12 2.98 6.41 -52.49 -0.34 2.65 16
9 C 0.07 1.59 5.31 -17.45 -0.09 1.50 16
10 N -0.84 -21.43 13.95 55.50 0.77 -20.66 16
11 Si 0.86 18.04 24.92 -169.99 -4.24 13.80 16
12 H -0.27 -5.37 6.73 56.52 0.38 -4.99 16
13 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16
14 H -0.25 -5.26 7.11 56.52 0.40 -4.85 16
15 C 0.54 12.44 7.40 -12.43 -0.09 12.35 16
16 O -0.58 -14.27 16.33 5.28 0.09 -14.19 16
17 C -0.11 -2.31 5.52 -104.97 -0.58 -2.89 16
18 C -0.04 -0.69 7.74 -39.19 -0.30 -0.99 16
19 C -0.17 -2.94 10.01 -39.58 -0.40 -3.33 16
20 C 0.10 1.69 7.31 -39.26 -0.29 1.41 16
21 F -0.15 -2.34 17.26 2.25 0.04 -2.30 16
22 C -0.18 -2.79 10.01 -39.57 -0.40 -3.19 16
23 C -0.05 -0.86 9.60 -39.18 -0.38 -1.24 16
24 H 0.06 0.85 8.13 -51.93 -0.42 0.42 16
25 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16
26 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16
27 H 0.11 2.20 3.40 -51.93 -0.18 2.02 16
28 H 0.12 2.28 7.37 -51.93 -0.38 1.90 16
29 H 0.28 6.61 8.31 -40.82 -0.34 6.27 16
30 H 0.18 3.63 5.41 -52.48 -0.28 3.35 16
31 H 0.13 2.01 8.06 -52.49 -0.42 1.59 16
32 H 0.13 1.71 8.06 -52.48 -0.42 1.29 16
33 H 0.13 2.28 7.96 -52.49 -0.42 1.86 16
LS Contribution 294.00 15.07 4.43 4.43
Total: -1.00 -28.79 294.00 -3.97 -32.77
By element:
Atomic # 1 Polarization: 9.90 SS G_CDS: -2.87 Total: 7.03 kcal
Atomic # 6 Polarization: 10.01 SS G_CDS: -1.29 Total: 8.72 kcal
Atomic # 7 Polarization: -31.74 SS G_CDS: 0.59 Total: -31.15 kcal
Atomic # 8 Polarization: -32.66 SS G_CDS: -0.63 Total: -33.30 kcal
Atomic # 9 Polarization: -2.34 SS G_CDS: 0.04 Total: -2.30 kcal
Atomic # 14 Polarization: 18.04 SS G_CDS: -4.24 Total: 13.80 kcal
Total LS contribution 4.43 Total: 4.43 kcal
Total: -28.79 -3.97 -32.77 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000120632551.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -81.359 kcal
(2) G-P(sol) polarization free energy of solvation -28.795 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.154 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.971 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.766 kcal
(6) G-S(sol) free energy of system = (1) + (5) -114.125 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds