Wall clock time and date at job start Wed Apr 15 2020 11:45:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45197 * 1
3 3 C 1.34229 * 117.00145 * 2 1
4 4 O 1.20829 * 120.00016 * 359.97438 * 3 2 1
5 5 C 1.50703 * 119.99948 * 179.97438 * 3 2 1
6 6 N 1.46503 * 109.46979 * 179.97438 * 5 3 2
7 7 C 1.36889 * 119.99928 * 270.00102 * 6 5 3
8 8 H 1.07997 * 119.99779 * 139.21058 * 7 6 5
9 9 C 1.39038 * 120.00364 * 319.20879 * 7 6 5
10 10 N 1.31365 * 119.99974 * 161.59467 * 9 7 6
11 11 Si 1.86799 * 119.99653 * 341.59912 * 9 7 6
12 12 H 1.48499 * 109.47255 * 95.26816 * 11 9 7
13 13 H 1.48503 * 109.46586 * 215.26257 * 11 9 7
14 14 H 1.48499 * 109.47230 * 335.25916 * 11 9 7
15 15 C 1.34780 * 119.99676 * 90.00380 * 6 5 3
16 16 O 1.21601 * 119.99777 * 3.58099 * 15 6 5
17 17 C 1.47611 * 119.99559 * 183.58181 * 15 6 5
18 18 C 1.39713 * 120.12927 * 327.65739 * 17 15 6
19 19 C 1.37813 * 119.87361 * 180.25281 * 18 17 15
20 20 C 1.38666 * 120.12957 * 359.47581 * 19 18 17
21 21 F 1.35094 * 119.88016 * 180.27689 * 20 19 18
22 22 C 1.38673 * 120.24433 * 0.25466 * 20 19 18
23 23 C 1.37821 * 120.13119 * 359.97438 * 22 20 19
24 24 H 1.08998 * 109.46971 * 60.00090 * 1 2 3
25 25 H 1.09001 * 109.47507 * 179.97438 * 1 2 3
26 26 H 1.08998 * 109.47247 * 300.00222 * 1 2 3
27 27 H 1.09007 * 109.46945 * 60.00211 * 5 3 2
28 28 H 1.08993 * 109.47494 * 300.00419 * 5 3 2
29 29 H 0.97000 * 120.00425 * 179.97438 * 10 9 7
30 30 H 1.08006 * 120.06202 * 0.02562 * 18 17 15
31 31 H 1.08000 * 119.93517 * 179.74965 * 19 18 17
32 32 H 1.08005 * 119.93233 * 180.02562 * 22 20 19
33 33 H 1.07998 * 120.06258 * 180.02562 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1960 0.0000
4 8 1.4033 2.2093 -0.0005
5 6 3.5664 1.2748 0.0006
6 7 3.9818 2.6797 -0.0002
7 6 4.1763 3.3353 -1.1860
8 1 3.8408 4.3554 -1.3004
9 6 4.8058 2.6878 -2.2432
10 7 4.6797 3.1514 -3.4659
11 14 5.8306 1.1589 -1.9249
12 1 4.9990 -0.0504 -2.1514
13 1 6.9927 1.1407 -2.8494
14 1 6.3149 1.1710 -0.5212
15 6 4.1724 3.3266 1.1668
16 8 4.0632 2.7272 2.2191
17 6 4.5137 4.7627 1.1672
18 6 5.2741 5.3031 0.1271
19 6 5.5941 6.6436 0.1355
20 6 5.1539 7.4578 1.1679
21 9 5.4659 8.7723 1.1682
22 6 4.3942 6.9280 2.2000
23 6 4.0720 5.5880 2.2045
24 1 -0.3633 0.5138 -0.8900
25 1 -0.3634 -1.0276 -0.0005
26 1 -0.3634 0.5139 0.8899
27 1 3.9564 0.7805 -0.8892
28 1 3.9558 0.7808 0.8907
29 1 5.1192 2.6999 -4.2035
30 1 5.6135 4.6708 -0.6801
31 1 6.1852 7.0615 -0.6659
32 1 4.0536 7.5669 3.0014
33 1 3.4799 5.1766 3.0086
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000120632551.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 15 2020 11:45:40
Heat of formation + Delta-G solvation = -130.759153 kcal
Electronic energy + Delta-G solvation = -22063.276890 eV
Core-core repulsion = 18390.238955 eV
Total energy + Delta-G solvation = -3673.037935 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 281.090 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-49.91715 -41.85945 -40.89360 -39.02880 -37.60582 -36.87260 -34.08886 -32.32254
-31.92175 -30.13651 -27.95390 -27.10870 -24.27228 -23.87829 -22.50963 -21.19947
-19.76679 -19.01028 -18.56971 -18.43439 -17.49326 -17.43446 -17.20618 -16.65750
-16.55109 -16.39957 -15.65605 -15.21102 -14.96063 -14.71635 -14.49721 -14.36202
-14.28604 -14.03836 -13.52699 -13.42722 -13.12960 -12.99117 -12.89581 -12.38082
-11.99930 -11.88762 -11.83445 -11.66707 -11.25479 -10.72756 -10.10066 -9.87250
-9.65787 -8.53898 -6.23269 -0.15697 0.35292 1.09571 1.20151 1.33044
1.41116 1.47193 1.92858 2.13801 2.41761 2.67593 3.00013 3.23897
3.78649 3.86002 3.90127 3.93683 4.00470 4.18544 4.29469 4.29983
4.36920 4.44986 4.63907 4.93876 5.05020 5.12738 5.16365 5.26907
5.32946 5.52977 5.90657 5.97143 6.11233 6.68755 6.81080 7.16980
7.51742 8.57049
Molecular weight = 281.09amu
Principal moments of inertia in cm(-1)
A = 0.016624 B = 0.006753 C = 0.005449
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1683.910513 B = 4145.243417 C = 5137.200282
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 O -0.364 6.364
3 C 0.451 3.549
4 O -0.523 6.523
5 C 0.098 3.902
6 N -0.450 5.450
7 C -0.346 4.346
8 H 0.087 0.913
9 C 0.034 3.966
10 N -0.883 5.883
11 Si 0.908 3.092
12 H -0.249 1.249
13 H -0.274 1.274
14 H -0.252 1.252
15 C 0.531 3.469
16 O -0.604 6.604
17 C -0.142 4.142
18 C -0.044 4.044
19 C -0.170 4.170
20 C 0.109 3.891
21 F -0.139 7.139
22 C -0.160 4.160
23 C -0.050 4.050
24 H 0.056 0.944
25 H 0.141 0.859
26 H 0.059 0.941
27 H 0.112 0.888
28 H 0.131 0.869
29 H 0.285 0.715
30 H 0.158 0.842
31 H 0.153 0.847
32 H 0.167 0.833
33 H 0.140 0.860
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.679 -1.253 5.385 5.570
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.280 6.280
3 C 0.293 3.707
4 O -0.411 6.411
5 C -0.026 4.026
6 N -0.170 5.170
7 C -0.473 4.473
8 H 0.105 0.895
9 C -0.172 4.172
10 N -0.518 5.518
11 Si 0.732 3.268
12 H -0.174 1.174
13 H -0.199 1.199
14 H -0.175 1.175
15 C 0.323 3.677
16 O -0.491 6.491
17 C -0.145 4.145
18 C -0.062 4.062
19 C -0.189 4.189
20 C 0.090 3.910
21 F -0.117 7.117
22 C -0.179 4.179
23 C -0.069 4.069
24 H 0.075 0.925
25 H 0.159 0.841
26 H 0.078 0.922
27 H 0.130 0.870
28 H 0.149 0.851
29 H 0.095 0.905
30 H 0.175 0.825
31 H 0.170 0.830
32 H 0.185 0.815
33 H 0.158 0.842
Dipole moment (debyes) X Y Z Total
from point charges -0.928 -1.236 5.654 5.862
hybrid contribution 0.029 -0.270 -0.506 0.575
sum -0.900 -1.506 5.148 5.439
Atomic orbital electron populations
1.23569 0.74786 1.05928 1.02242 1.86487 1.25203 1.32273 1.84055
1.24582 0.92812 0.81677 0.71599 1.90612 1.67275 1.37541 1.45681
1.21521 0.87557 0.87396 1.06146 1.43264 1.58380 1.09183 1.06197
1.18974 1.39375 1.00387 0.88576 0.89520 1.25889 0.96640 1.00647
0.94071 1.69772 1.40194 1.42310 0.99484 0.86366 0.80011 0.80314
0.80155 1.17430 1.19929 1.17541 1.18607 0.78185 0.88026 0.82865
1.90615 1.57315 1.69162 1.31976 1.19899 1.03468 0.93134 0.98033
1.22108 0.92895 0.94958 0.96226 1.21316 1.04083 0.93724 0.99743
1.18018 0.98578 0.77810 0.96641 1.91478 1.91250 1.32482 1.96508
1.21167 1.01258 0.95539 0.99911 1.21131 0.96786 0.92508 0.96500
0.92489 0.84068 0.92197 0.87035 0.85102 0.90499 0.82473 0.82959
0.81511 0.84213
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.72 10.56 113.37 1.20 1.91 16
2 O -0.36 -12.58 10.56 -51.41 -0.54 -13.12 16
3 C 0.45 19.18 8.02 71.24 0.57 19.75 16
4 O -0.52 -25.50 16.18 21.96 0.36 -25.15 16
5 C 0.10 4.16 4.79 85.63 0.41 4.57 16
6 N -0.45 -21.29 1.61 -643.12 -1.04 -22.33 16
7 C -0.35 -17.27 6.57 84.10 0.55 -16.72 16
8 H 0.09 4.74 6.41 -2.91 -0.02 4.72 16
9 C 0.03 1.65 5.31 84.95 0.45 2.10 16
10 N -0.88 -45.60 13.95 21.68 0.30 -45.30 16
11 Si 0.91 36.67 24.92 68.60 1.71 38.38 16
12 H -0.25 -9.28 6.73 99.48 0.67 -8.61 16
13 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16
14 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16
15 C 0.53 24.94 7.40 86.72 0.64 25.58 16
16 O -0.60 -29.71 16.33 -4.04 -0.07 -29.78 16
17 C -0.14 -5.93 5.52 -20.09 -0.11 -6.04 16
18 C -0.04 -1.71 7.74 22.53 0.17 -1.54 16
19 C -0.17 -5.65 10.01 22.27 0.22 -5.43 16
20 C 0.11 3.36 7.31 22.48 0.16 3.53 16
21 F -0.14 -4.01 17.26 44.97 0.78 -3.23 16
22 C -0.16 -4.70 10.01 22.28 0.22 -4.48 16
23 C -0.05 -1.76 9.60 22.53 0.22 -1.55 16
24 H 0.06 1.52 8.13 -2.39 -0.02 1.50 16
25 H 0.14 2.33 8.14 -2.39 -0.02 2.31 16
26 H 0.06 1.55 8.13 -2.39 -0.02 1.53 16
27 H 0.11 4.53 3.40 -2.38 -0.01 4.52 16
28 H 0.13 5.07 7.37 -2.39 -0.02 5.05 16
29 H 0.28 13.59 8.31 -92.71 -0.77 12.82 16
30 H 0.16 6.76 5.41 -2.91 -0.02 6.75 16
31 H 0.15 4.40 8.06 -2.91 -0.02 4.37 16
32 H 0.17 3.68 8.06 -2.91 -0.02 3.66 16
33 H 0.14 4.66 7.96 -2.91 -0.02 4.64 16
Total: -1.00 -62.36 294.00 7.34 -55.02
By element:
Atomic # 1 Polarization: 22.68 SS G_CDS: 1.12 Total: 23.80 kcal
Atomic # 6 Polarization: 16.99 SS G_CDS: 4.71 Total: 21.70 kcal
Atomic # 7 Polarization: -66.89 SS G_CDS: -0.74 Total: -67.63 kcal
Atomic # 8 Polarization: -67.79 SS G_CDS: -0.25 Total: -68.04 kcal
Atomic # 9 Polarization: -4.01 SS G_CDS: 0.78 Total: -3.23 kcal
Atomic # 14 Polarization: 36.67 SS G_CDS: 1.71 Total: 38.38 kcal
Total: -62.36 7.34 -55.02 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000120632551.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -75.737 kcal
(2) G-P(sol) polarization free energy of solvation -62.358 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.095 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.336 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.022 kcal
(6) G-S(sol) free energy of system = (1) + (5) -130.759 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds