Wall clock time and date at job start Wed Apr 15 2020 11:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42098 * 109.46906 * 2 1 4 4 C 1.81402 * 103.00066 * 116.38857 * 2 1 3 5 5 C 1.53000 * 109.46721 * 179.97438 * 4 2 1 6 6 N 1.46497 * 109.46689 * 179.97438 * 5 4 2 7 7 C 1.34775 * 120.00156 * 179.97438 * 6 5 4 8 8 O 1.21557 * 119.99667 * 359.97438 * 7 6 5 9 9 C 1.47886 * 120.00619 * 180.02562 * 7 6 5 10 10 C 1.39924 * 120.01958 * 359.72129 * 9 7 6 11 11 C 1.38328 * 120.35274 * 179.74687 * 10 9 7 12 12 C 1.37748 * 120.41594 * 0.55369 * 11 10 9 13 13 C 1.40751 * 120.03689 * 359.70627 * 12 11 10 14 14 C 1.41441 * 120.17695 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99688 * 24.44097 * 14 13 12 16 16 C 1.39939 * 120.00209 * 204.43599 * 14 13 12 17 17 N 1.30827 * 119.99474 * 17.87651 * 16 14 13 18 18 Si 1.86796 * 120.00050 * 197.88272 * 16 14 13 19 19 H 1.48493 * 109.47288 * 60.00027 * 18 16 14 20 20 H 1.48497 * 109.46860 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47267 * 299.99658 * 18 16 14 22 22 C 1.38996 * 120.02635 * 180.02562 * 9 7 6 23 23 H 1.09004 * 109.46714 * 303.60977 * 1 2 3 24 24 H 1.08999 * 109.47282 * 63.61187 * 1 2 3 25 25 H 1.08996 * 109.47320 * 183.61500 * 1 2 3 26 26 H 1.08993 * 109.46944 * 299.99603 * 4 2 1 27 27 H 1.09004 * 109.46718 * 59.99879 * 4 2 1 28 28 H 1.09002 * 109.47080 * 299.99636 * 5 4 2 29 29 H 1.08992 * 109.47082 * 59.99948 * 5 4 2 30 30 H 0.97005 * 120.00334 * 359.97438 * 6 5 4 31 31 H 1.07998 * 119.82445 * 359.97438 * 10 9 7 32 32 H 1.08006 * 119.79261 * 180.27831 * 11 10 9 33 33 H 1.08001 * 119.98363 * 179.71754 * 12 11 10 34 34 H 0.97001 * 119.99207 * 179.97438 * 17 16 14 35 35 H 1.07993 * 120.20501 * 359.94843 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3397 0.0000 4 6 2.2221 -0.7856 1.5833 5 6 3.7424 -0.8628 1.7374 6 7 4.0719 -1.4966 3.0164 7 6 5.3608 -1.6726 3.3690 8 8 6.2498 -1.3058 2.6255 9 6 5.6936 -2.3130 4.6598 10 6 4.6707 -2.7311 5.5181 11 6 4.9741 -3.3356 6.7247 12 6 6.2860 -3.5227 7.1006 13 6 7.3284 -3.1037 6.2527 14 6 8.6766 -3.2948 6.6355 15 1 8.9333 -4.0747 7.3371 16 6 9.6778 -2.4735 6.1049 17 7 9.3610 -1.3331 5.5475 18 14 11.4662 -3.0056 6.1926 19 1 11.6362 -4.2913 5.4692 20 1 12.3227 -1.9678 5.5644 21 1 11.8615 -3.1809 7.6132 22 6 7.0227 -2.4942 5.0241 23 1 -0.3633 0.5689 0.8559 24 1 -0.3634 0.4567 -0.9206 25 1 -0.3634 -1.0256 0.0648 26 1 1.8033 -0.1970 2.3995 27 1 1.8031 -1.7916 1.6084 28 1 4.1609 -1.4516 0.9211 29 1 4.1616 0.1430 1.7121 30 1 3.3625 -1.7897 3.6095 31 1 3.6387 -2.5845 5.2353 32 1 4.1773 -3.6589 7.3783 33 1 6.5149 -3.9913 8.0463 34 1 10.0551 -0.7637 5.1801 35 1 7.8154 -2.1693 4.3666 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730103347.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:45 Heat of formation + Delta-G solvation = -59.893896 kcal Electronic energy + Delta-G solvation = -18774.941609 eV Core-core repulsion = 15671.189798 eV Total energy + Delta-G solvation = -3103.751811 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -39.20233 -37.06635 -35.93644 -34.92084 -33.73898 -31.10002 -29.64506 -29.42003 -29.12139 -25.35467 -23.76243 -21.89452 -20.91379 -19.63906 -17.90040 -17.53623 -16.34592 -15.92628 -15.71212 -15.16417 -14.90312 -14.74039 -14.53835 -14.26596 -13.69262 -13.46005 -13.20726 -12.98889 -12.64557 -12.50234 -12.28838 -12.09324 -11.69399 -11.54992 -11.15061 -11.07664 -10.76007 -10.54926 -10.50538 -10.04104 -9.70938 -9.21490 -9.05960 -8.70564 -8.52194 -7.64463 -7.53460 -6.80574 -4.42279 1.18728 2.19855 2.32235 2.81498 3.07578 3.09453 3.16329 3.47795 3.81840 3.85903 3.91944 4.59936 4.62891 4.73932 4.79958 4.91565 5.35173 5.56911 5.58722 5.61214 5.74894 5.93660 6.07690 6.25368 6.70637 6.80287 6.97717 7.00537 7.20429 7.36895 7.68672 7.74230 7.91383 8.07323 8.17878 8.49393 8.79176 8.82451 8.93033 10.14057 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.029447 B = 0.003382 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.618901 B = 8275.918063 C = 9081.585739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.493 4.493 2 S 1.260 4.740 3 O -0.846 6.846 4 C -0.465 4.465 5 C 0.142 3.858 6 N -0.735 5.735 7 C 0.563 3.437 8 O -0.544 6.544 9 C -0.128 4.128 10 C -0.220 4.220 11 C -0.097 4.097 12 C -0.213 4.213 13 C 0.099 3.901 14 C -0.460 4.460 15 H 0.081 0.919 16 C 0.073 3.927 17 N -0.782 5.782 18 Si 0.912 3.088 19 H -0.262 1.262 20 H -0.277 1.277 21 H -0.265 1.265 22 C -0.092 4.092 23 H 0.079 0.921 24 H 0.105 0.895 25 H 0.113 0.887 26 H 0.091 0.909 27 H 0.124 0.876 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.400 0.600 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.286 0.714 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.242 -2.548 -9.544 17.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.650 4.650 2 S 1.456 4.544 3 O -0.842 6.842 4 C -0.602 4.602 5 C 0.017 3.983 6 N -0.390 5.390 7 C 0.353 3.647 8 O -0.422 6.422 9 C -0.131 4.131 10 C -0.240 4.240 11 C -0.116 4.116 12 C -0.233 4.233 13 C 0.096 3.904 14 C -0.489 4.489 15 H 0.099 0.901 16 C -0.147 4.147 17 N -0.406 5.406 18 Si 0.736 3.264 19 H -0.187 1.187 20 H -0.202 1.202 21 H -0.190 1.190 22 C -0.112 4.112 23 H 0.098 0.902 24 H 0.124 0.876 25 H 0.131 0.869 26 H 0.110 0.890 27 H 0.142 0.858 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.235 0.765 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.097 0.903 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.885 -1.669 -10.893 16.954 hybrid contribution -0.662 0.905 2.222 2.489 sum -13.546 -0.764 -8.670 16.102 Atomic orbital electron populations 1.27675 1.22056 1.08051 1.07232 1.70691 0.86134 0.98934 0.98643 1.93158 1.73294 1.36761 1.80953 1.27997 1.02357 1.10858 1.18970 1.20698 0.90729 0.99109 0.87757 1.45975 1.08335 1.63854 1.20871 1.18888 0.81417 0.77628 0.86761 1.90706 1.47053 1.50747 1.53707 1.19465 0.95407 1.04694 0.93558 1.20320 0.95608 1.10407 0.97674 1.20426 0.95755 0.99614 0.95760 1.21094 0.92379 1.10140 0.99671 1.17601 0.93101 0.89635 0.90036 1.19567 0.90963 1.14839 1.23494 0.90071 1.25981 1.02062 0.93627 0.92993 1.69784 1.36543 1.07346 1.26953 0.86307 0.80988 0.79599 0.79531 1.18684 1.20202 1.18974 1.21649 0.93632 0.99464 0.96461 0.90164 0.87604 0.86863 0.88991 0.85790 0.90614 0.91449 0.76485 0.89335 0.88939 0.88610 0.90313 0.84786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -2.67 10.74 101.05 1.09 -1.58 16 2 S 1.26 9.16 13.80 -107.50 -1.48 7.68 16 3 O -0.85 -12.69 18.14 -35.23 -0.64 -13.33 16 4 C -0.47 -4.01 6.04 37.16 0.22 -3.78 16 5 C 0.14 1.93 5.68 -4.04 -0.02 1.91 16 6 N -0.74 -12.12 5.51 -61.24 -0.34 -12.46 16 7 C 0.56 12.44 7.77 -12.31 -0.10 12.35 16 8 O -0.54 -13.84 16.33 5.32 0.09 -13.76 16 9 C -0.13 -3.04 5.87 -105.04 -0.62 -3.65 16 10 C -0.22 -4.61 9.55 -38.92 -0.37 -4.98 16 11 C -0.10 -2.07 10.01 -39.73 -0.40 -2.47 16 12 C -0.21 -5.06 9.78 -38.81 -0.38 -5.44 16 13 C 0.10 2.62 5.57 -106.87 -0.60 2.02 16 14 C -0.46 -12.09 9.05 -37.73 -0.34 -12.43 16 15 H 0.08 2.01 7.91 -52.49 -0.42 1.60 16 16 C 0.07 1.85 5.14 -17.34 -0.09 1.76 16 17 N -0.78 -20.89 10.95 55.55 0.61 -20.29 16 18 Si 0.91 18.82 29.60 -169.99 -5.03 13.78 16 19 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 20 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 21 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 22 C -0.09 -2.46 8.24 -38.44 -0.32 -2.78 16 23 H 0.08 0.56 8.14 -51.92 -0.42 0.14 16 24 H 0.11 0.53 8.14 -51.92 -0.42 0.10 16 25 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.12 0.67 8.14 -51.92 -0.42 0.25 16 28 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.40 5.58 6.49 -40.82 -0.26 5.31 16 31 H 0.09 1.51 6.38 -52.49 -0.33 1.18 16 32 H 0.09 1.66 8.06 -52.48 -0.42 1.24 16 33 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 34 H 0.29 7.04 8.30 -40.82 -0.34 6.70 16 35 H 0.13 3.89 5.74 -52.49 -0.30 3.59 16 LS Contribution 317.00 15.07 4.78 4.78 Total: -1.00 -36.28 317.00 -8.19 -44.47 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -4.25 Total: 8.20 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: -1.92 Total: -19.07 kcal Atomic # 7 Polarization: -33.02 SS G_CDS: 0.27 Total: -32.75 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -0.55 Total: -27.08 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.78 kcal Atomic # 16 Polarization: 9.16 SS G_CDS: -1.48 Total: 7.68 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -36.28 -8.19 -44.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730103347.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.423 kcal (2) G-P(sol) polarization free energy of solvation -36.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds