Wall clock time and date at job start Wed Apr 15 2020 11:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42098 * 109.46906 * 2 1 4 4 C 1.81402 * 103.00066 * 116.38857 * 2 1 3 5 5 C 1.53000 * 109.46721 * 179.97438 * 4 2 1 6 6 N 1.46497 * 109.46689 * 179.97438 * 5 4 2 7 7 C 1.34775 * 120.00156 * 179.97438 * 6 5 4 8 8 O 1.21557 * 119.99667 * 359.97438 * 7 6 5 9 9 C 1.47886 * 120.00619 * 180.02562 * 7 6 5 10 10 C 1.39924 * 120.01958 * 359.72129 * 9 7 6 11 11 C 1.38328 * 120.35274 * 179.74687 * 10 9 7 12 12 C 1.37748 * 120.41594 * 0.55369 * 11 10 9 13 13 C 1.40751 * 120.03689 * 359.70627 * 12 11 10 14 14 C 1.41441 * 120.17695 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99688 * 24.44097 * 14 13 12 16 16 C 1.39939 * 120.00209 * 204.43599 * 14 13 12 17 17 N 1.30827 * 119.99474 * 17.87651 * 16 14 13 18 18 Si 1.86796 * 120.00050 * 197.88272 * 16 14 13 19 19 H 1.48493 * 109.47288 * 60.00027 * 18 16 14 20 20 H 1.48497 * 109.46860 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47267 * 299.99658 * 18 16 14 22 22 C 1.38996 * 120.02635 * 180.02562 * 9 7 6 23 23 H 1.09004 * 109.46714 * 303.60977 * 1 2 3 24 24 H 1.08999 * 109.47282 * 63.61187 * 1 2 3 25 25 H 1.08996 * 109.47320 * 183.61500 * 1 2 3 26 26 H 1.08993 * 109.46944 * 299.99603 * 4 2 1 27 27 H 1.09004 * 109.46718 * 59.99879 * 4 2 1 28 28 H 1.09002 * 109.47080 * 299.99636 * 5 4 2 29 29 H 1.08992 * 109.47082 * 59.99948 * 5 4 2 30 30 H 0.97005 * 120.00334 * 359.97438 * 6 5 4 31 31 H 1.07998 * 119.82445 * 359.97438 * 10 9 7 32 32 H 1.08006 * 119.79261 * 180.27831 * 11 10 9 33 33 H 1.08001 * 119.98363 * 179.71754 * 12 11 10 34 34 H 0.97001 * 119.99207 * 179.97438 * 17 16 14 35 35 H 1.07993 * 120.20501 * 359.94843 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3397 0.0000 4 6 2.2221 -0.7856 1.5833 5 6 3.7424 -0.8628 1.7374 6 7 4.0719 -1.4966 3.0164 7 6 5.3608 -1.6726 3.3690 8 8 6.2498 -1.3058 2.6255 9 6 5.6936 -2.3130 4.6598 10 6 4.6707 -2.7311 5.5181 11 6 4.9741 -3.3356 6.7247 12 6 6.2860 -3.5227 7.1006 13 6 7.3284 -3.1037 6.2527 14 6 8.6766 -3.2948 6.6355 15 1 8.9333 -4.0747 7.3371 16 6 9.6778 -2.4735 6.1049 17 7 9.3610 -1.3331 5.5475 18 14 11.4662 -3.0056 6.1926 19 1 11.6362 -4.2913 5.4692 20 1 12.3227 -1.9678 5.5644 21 1 11.8615 -3.1809 7.6132 22 6 7.0227 -2.4942 5.0241 23 1 -0.3633 0.5689 0.8559 24 1 -0.3634 0.4567 -0.9206 25 1 -0.3634 -1.0256 0.0648 26 1 1.8033 -0.1970 2.3995 27 1 1.8031 -1.7916 1.6084 28 1 4.1609 -1.4516 0.9211 29 1 4.1616 0.1430 1.7121 30 1 3.3625 -1.7897 3.6095 31 1 3.6387 -2.5845 5.2353 32 1 4.1773 -3.6589 7.3783 33 1 6.5149 -3.9913 8.0463 34 1 10.0551 -0.7637 5.1801 35 1 7.8154 -2.1693 4.3666 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730103347.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:44 Heat of formation + Delta-G solvation = -87.839361 kcal Electronic energy + Delta-G solvation = -18776.153415 eV Core-core repulsion = 15671.189798 eV Total energy + Delta-G solvation = -3104.963617 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.90427 -38.85718 -36.86894 -36.36243 -35.58541 -32.63563 -31.33100 -30.93720 -29.69578 -27.22779 -25.12550 -23.37643 -22.72318 -21.31620 -19.57552 -18.37912 -17.98044 -17.34076 -16.83661 -16.74963 -16.42843 -15.86855 -15.71456 -15.38446 -15.20079 -14.97813 -14.43944 -14.38258 -14.27065 -13.54946 -13.49748 -13.08472 -12.99926 -12.95163 -12.80467 -12.53641 -12.45200 -12.20311 -11.92772 -11.52512 -11.41253 -11.07112 -10.76982 -10.19862 -9.48357 -9.39298 -9.22644 -8.67295 -6.39024 0.36589 0.54284 1.00851 1.36026 1.47969 1.50781 1.74778 2.07924 2.18950 2.33346 2.77944 2.88466 3.69051 3.69763 3.96399 4.06649 4.32853 4.41427 4.47327 4.55378 4.58940 4.73802 4.87036 4.97607 5.08108 5.18803 5.19123 5.30444 5.40610 5.51257 5.85817 5.91576 6.04848 6.28116 6.50063 6.67554 6.87003 6.94186 7.28556 8.29198 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.029447 B = 0.003382 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.618901 B = 8275.918063 C = 9081.585739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.483 4.483 2 S 1.306 4.694 3 O -0.930 6.930 4 C -0.457 4.457 5 C 0.131 3.869 6 N -0.710 5.710 7 C 0.557 3.443 8 O -0.590 6.590 9 C -0.140 4.140 10 C -0.198 4.198 11 C -0.095 4.095 12 C -0.218 4.218 13 C 0.067 3.933 14 C -0.498 4.498 15 H 0.085 0.915 16 C 0.028 3.972 17 N -0.827 5.827 18 Si 0.984 3.016 19 H -0.259 1.259 20 H -0.273 1.273 21 H -0.252 1.252 22 C -0.132 4.132 23 H 0.068 0.932 24 H 0.114 0.886 25 H 0.152 0.848 26 H 0.088 0.912 27 H 0.171 0.829 28 H 0.091 0.909 29 H 0.032 0.968 30 H 0.415 0.585 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.109 0.891 34 H 0.286 0.714 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.564 -4.308 -9.298 20.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.642 4.642 2 S 1.505 4.495 3 O -0.926 6.926 4 C -0.593 4.593 5 C 0.007 3.993 6 N -0.364 5.364 7 C 0.346 3.654 8 O -0.472 6.472 9 C -0.143 4.143 10 C -0.217 4.217 11 C -0.113 4.113 12 C -0.237 4.237 13 C 0.064 3.936 14 C -0.527 4.527 15 H 0.104 0.896 16 C -0.187 4.187 17 N -0.452 5.452 18 Si 0.804 3.196 19 H -0.183 1.183 20 H -0.198 1.198 21 H -0.176 1.176 22 C -0.153 4.153 23 H 0.087 0.913 24 H 0.132 0.868 25 H 0.171 0.829 26 H 0.106 0.894 27 H 0.188 0.812 28 H 0.109 0.891 29 H 0.051 0.949 30 H 0.254 0.746 31 H 0.157 0.843 32 H 0.158 0.842 33 H 0.127 0.873 34 H 0.097 0.903 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -16.258 -3.436 -10.631 19.727 hybrid contribution 0.025 1.403 2.129 2.550 sum -16.233 -2.033 -8.501 18.437 Atomic orbital electron populations 1.27592 1.18853 1.10586 1.07213 1.69828 0.87104 0.95845 0.96715 1.93032 1.76578 1.40606 1.82393 1.27971 0.98360 1.13655 1.19275 1.20923 0.94486 0.97190 0.86669 1.45776 1.06586 1.62116 1.21947 1.18826 0.82878 0.77551 0.86125 1.90681 1.48895 1.52766 1.54831 1.19787 0.95124 1.04509 0.94927 1.20862 0.97177 1.07249 0.96428 1.20934 0.95826 0.98251 0.96293 1.21421 0.93171 1.09398 0.99750 1.17953 0.94315 0.90692 0.90612 1.19859 0.91931 1.15862 1.25040 0.89645 1.26894 1.06543 0.93131 0.92110 1.69897 1.37824 1.08749 1.28763 0.85219 0.75230 0.79035 0.80073 1.18295 1.19815 1.17574 1.21458 0.94448 1.02465 0.96908 0.91266 0.86779 0.82930 0.89360 0.81156 0.89119 0.94913 0.74591 0.84343 0.84205 0.87295 0.90342 0.88403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.48 -3.36 10.74 113.37 1.22 -2.14 16 2 S 1.31 16.42 13.80 -56.49 -0.78 15.65 16 3 O -0.93 -28.25 18.14 -148.98 -2.70 -30.95 16 4 C -0.46 -6.35 6.04 71.98 0.43 -5.91 16 5 C 0.13 3.42 5.68 86.38 0.49 3.91 16 6 N -0.71 -22.03 5.51 -465.94 -2.57 -24.59 16 7 C 0.56 24.79 7.77 86.80 0.67 25.46 16 8 O -0.59 -31.46 16.33 -3.90 -0.06 -31.52 16 9 C -0.14 -6.66 5.87 -20.13 -0.12 -6.78 16 10 C -0.20 -7.62 9.55 22.70 0.22 -7.41 16 11 C -0.10 -3.71 10.01 22.18 0.22 -3.48 16 12 C -0.22 -10.13 9.78 22.77 0.22 -9.91 16 13 C 0.07 3.64 5.57 -21.32 -0.12 3.52 16 14 C -0.50 -27.29 9.05 23.47 0.21 -27.08 16 15 H 0.09 4.39 7.91 -2.91 -0.02 4.36 16 16 C 0.03 1.49 5.14 85.25 0.44 1.92 16 17 N -0.83 -47.07 10.95 21.83 0.24 -46.83 16 18 Si 0.98 40.04 29.60 68.60 2.03 42.07 16 19 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 20 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 21 H -0.25 -9.60 7.11 99.48 0.71 -8.90 16 22 C -0.13 -7.43 8.24 23.01 0.19 -7.24 16 23 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.15 -0.07 8.14 -2.39 -0.02 -0.09 16 26 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.17 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.09 2.11 8.14 -2.39 -0.02 2.10 16 29 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.42 9.87 6.49 -92.70 -0.60 9.27 16 31 H 0.14 3.91 6.38 -2.91 -0.02 3.89 16 32 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 33 H 0.11 4.67 8.06 -2.91 -0.02 4.64 16 34 H 0.29 15.10 8.30 -92.71 -0.77 14.33 16 35 H 0.10 6.15 5.74 -2.91 -0.02 6.13 16 Total: -1.00 -87.15 317.00 0.75 -86.41 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: 0.51 Total: 24.91 kcal Atomic # 6 Polarization: -39.21 SS G_CDS: 4.08 Total: -35.13 kcal Atomic # 7 Polarization: -69.10 SS G_CDS: -2.33 Total: -71.43 kcal Atomic # 8 Polarization: -59.71 SS G_CDS: -2.77 Total: -62.47 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.07 kcal Atomic # 16 Polarization: 16.42 SS G_CDS: -0.78 Total: 15.65 kcal Total: -87.15 0.75 -86.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730103347.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.434 kcal (2) G-P(sol) polarization free energy of solvation -87.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds