Wall clock time and date at job start Wed Apr 15 2020 11:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86795 * 120.00118 * 2 1 4 4 H 1.48497 * 109.47234 * 89.99969 * 3 2 1 5 5 H 1.48504 * 109.46981 * 210.00088 * 3 2 1 6 6 H 1.48500 * 109.47228 * 329.99734 * 3 2 1 7 7 C 1.40044 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00127 * 179.97438 * 7 2 1 9 9 C 1.46376 * 120.00321 * 359.97438 * 7 2 1 10 10 O 1.21687 * 119.99681 * 354.99925 * 9 7 2 11 11 N 1.34777 * 120.00313 * 175.00114 * 9 7 2 12 12 C 1.47077 * 120.87886 * 4.94953 * 11 9 7 13 13 C 1.53698 * 108.27700 * 128.75585 * 12 11 9 14 14 N 1.46898 * 109.25562 * 54.08236 * 13 12 11 15 15 C 1.46897 * 111.00153 * 172.60616 * 14 13 12 16 16 C 1.50703 * 109.47390 * 294.30172 * 15 14 13 17 17 C 1.33642 * 122.74893 * 94.72867 * 16 15 14 18 18 S 1.76193 * 107.92195 * 179.97438 * 17 16 15 19 19 C 1.70977 * 90.28395 * 0.27484 * 18 17 16 20 20 N 1.29028 * 110.16607 * 359.84151 * 19 18 17 21 21 C 1.46905 * 111.27013 * 296.75466 * 14 13 12 22 22 C 1.47076 * 120.88062 * 185.22734 * 11 9 7 23 23 H 0.97000 * 120.00181 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.62715 * 248.52147 * 12 11 9 25 25 H 1.09000 * 109.63081 * 9.10385 * 12 11 9 26 26 H 1.09001 * 109.64838 * 294.07883 * 13 12 11 27 27 H 1.08999 * 109.44526 * 173.95833 * 13 12 11 28 28 H 1.09003 * 109.47098 * 54.30008 * 15 14 13 29 29 H 1.09003 * 109.47503 * 174.29843 * 15 14 13 30 30 H 1.07995 * 126.03455 * 0.04213 * 17 16 15 31 31 H 1.08000 * 124.91321 * 179.83691 * 19 18 17 32 32 H 1.08994 * 109.49159 * 303.15220 * 21 14 13 33 33 H 1.08996 * 109.49043 * 183.06336 * 21 14 13 34 34 H 1.08999 * 109.63197 * 350.89564 * 22 11 9 35 35 H 1.09008 * 109.62635 * 111.48013 * 22 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4882 2.0464 1.4000 5 1 3.5383 1.4400 -0.7001 6 1 1.4383 2.6526 -0.7001 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0617 -2.4825 0.0918 11 7 1.9449 -3.6455 -0.1028 12 6 3.4155 -3.6728 -0.1066 13 6 3.8814 -4.6906 0.9466 14 7 3.2360 -5.9847 0.6885 15 6 3.7848 -7.0303 1.5623 16 6 5.2319 -7.2673 1.2146 17 6 6.2376 -6.6647 1.8560 18 16 7.7482 -7.2205 1.1392 19 6 6.8769 -8.2016 0.0430 20 7 5.6089 -8.0808 0.2489 21 6 1.7771 -5.8907 0.8322 22 6 1.2249 -4.9226 -0.2195 23 1 -0.4850 0.8400 0.0004 24 1 3.7736 -3.9711 -1.0920 25 1 3.8007 -2.6840 0.1423 26 1 3.6077 -4.3397 1.9417 27 1 4.9637 -4.8055 0.8864 28 1 3.7085 -6.7119 2.6020 29 1 3.2217 -7.9531 1.4227 30 1 6.1414 -5.9622 2.6705 31 1 7.3234 -8.8312 -0.7124 32 1 1.5327 -5.5231 1.8288 33 1 1.3333 -6.8758 0.6885 34 1 0.1612 -4.7606 -0.0453 35 1 1.3766 -5.3387 -1.2156 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331073527.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:37 Heat of formation + Delta-G solvation = 30.486054 kcal Electronic energy + Delta-G solvation = -19721.115666 eV Core-core repulsion = 16653.575775 eV Total energy + Delta-G solvation = -3067.539891 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.12038 -38.57477 -36.46271 -33.56114 -32.48762 -31.15074 -30.25692 -27.95997 -26.30837 -25.23583 -23.62933 -23.01268 -20.75566 -19.66997 -18.81022 -18.09392 -16.66364 -15.97902 -15.80933 -15.21935 -14.79017 -14.35294 -14.30915 -14.09817 -13.89709 -13.61057 -13.41770 -13.06658 -12.49654 -12.24217 -11.79580 -11.44937 -11.37619 -11.12578 -10.93081 -10.90965 -10.73483 -10.43385 -10.22064 -9.97767 -9.76227 -9.57153 -9.01823 -8.86671 -8.17613 -7.58434 -7.17340 -6.20306 -4.65250 0.57979 1.25518 1.58358 2.65631 3.12721 3.19758 3.22893 4.04399 4.08069 4.20488 4.55116 4.62628 4.87628 5.05837 5.16283 5.32371 5.46173 5.52798 5.57415 5.69990 5.82443 5.85586 5.89884 5.98351 6.10207 6.26441 6.46577 6.55811 6.72962 7.19463 7.28190 7.44610 7.62089 7.64767 8.13256 8.36827 9.01463 9.44651 10.57222 10.75863 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.025202 B = 0.004145 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.763997 B = 6752.931272 C = 7606.269099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.264 1.264 6 H -0.279 1.279 7 C -0.545 4.545 8 H 0.072 0.928 9 C 0.560 3.440 10 O -0.579 6.579 11 N -0.644 5.644 12 C 0.131 3.869 13 C 0.038 3.962 14 N -0.529 5.529 15 C 0.127 3.873 16 C 0.083 3.917 17 C -0.251 4.251 18 S 0.105 5.895 19 C 0.021 3.979 20 N -0.452 5.452 21 C 0.048 3.952 22 C 0.126 3.874 23 H 0.268 0.732 24 H 0.049 0.951 25 H 0.094 0.906 26 H 0.036 0.964 27 H 0.072 0.928 28 H 0.049 0.951 29 H 0.090 0.910 30 H 0.176 0.824 31 H 0.198 0.802 32 H 0.036 0.964 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.018 -13.555 3.486 20.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.730 3.270 4 H -0.198 1.198 5 H -0.189 1.189 6 H -0.204 1.204 7 C -0.581 4.581 8 H 0.090 0.910 9 C 0.366 3.634 10 O -0.461 6.461 11 N -0.383 5.383 12 C 0.006 3.994 13 C -0.090 4.090 14 N -0.254 5.254 15 C -0.004 4.004 16 C -0.050 4.050 17 C -0.390 4.390 18 S 0.357 5.643 19 C -0.278 4.278 20 N -0.165 5.165 21 C -0.081 4.081 22 C 0.001 3.999 23 H 0.079 0.921 24 H 0.067 0.933 25 H 0.112 0.888 26 H 0.054 0.946 27 H 0.090 0.910 28 H 0.067 0.933 29 H 0.108 0.892 30 H 0.193 0.807 31 H 0.215 0.785 32 H 0.054 0.946 33 H 0.094 0.906 34 H 0.105 0.895 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 14.934 -13.686 2.862 20.458 hybrid contribution -0.313 1.079 0.982 1.492 sum 14.621 -12.607 3.844 19.685 Atomic orbital electron populations 1.70015 1.07070 1.27287 1.35308 1.25723 0.94603 1.00274 0.92578 0.86400 0.80223 0.81503 0.78825 1.19752 1.18851 1.20418 1.20968 0.93542 0.89285 1.54340 0.91005 1.18251 0.86903 0.82204 0.76083 1.90586 1.14382 1.86112 1.55067 1.48239 1.04711 1.05862 1.79479 1.21540 0.82708 0.98453 0.96723 1.22726 0.98457 0.89173 0.98681 1.61879 1.04948 1.05515 1.53036 1.20567 0.88430 0.96860 0.94534 1.20200 0.97233 0.94826 0.92718 1.26926 0.94166 1.09087 1.08858 1.83996 1.11526 1.39572 1.29186 1.28420 0.91814 1.03659 1.03888 1.66100 1.15129 1.18396 1.16857 1.22527 0.86505 0.99966 0.99095 1.21209 0.97866 0.84326 0.96490 0.92093 0.93317 0.88817 0.94577 0.90963 0.93309 0.89177 0.80669 0.78541 0.94621 0.90631 0.89454 0.93212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.05 11.84 55.55 0.66 -22.39 16 2 C 0.09 2.45 5.50 -17.37 -0.10 2.35 16 3 Si 0.91 20.01 29.56 -169.99 -5.02 14.99 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.54 -15.31 8.86 -35.63 -0.32 -15.62 16 8 H 0.07 1.84 5.74 -52.49 -0.30 1.54 16 9 C 0.56 16.10 7.63 -12.99 -0.10 16.00 16 10 O -0.58 -18.86 14.49 5.20 0.08 -18.78 16 11 N -0.64 -15.05 3.00 -173.84 -0.52 -15.57 16 12 C 0.13 2.54 6.50 -3.36 -0.02 2.52 16 13 C 0.04 0.62 5.43 -3.46 -0.02 0.60 16 14 N -0.53 -8.27 4.62 -235.46 -1.09 -9.36 16 15 C 0.13 1.63 5.41 -4.98 -0.03 1.61 16 16 C 0.08 1.04 5.58 -84.23 -0.47 0.56 16 17 C -0.25 -2.64 9.68 29.12 0.28 -2.35 16 18 S 0.11 0.91 23.22 -107.50 -2.50 -1.59 16 19 C 0.02 0.20 12.23 51.58 0.63 0.83 16 20 N -0.45 -5.85 10.53 -11.90 -0.13 -5.97 16 21 C 0.05 0.78 5.62 -3.70 -0.02 0.76 16 22 C 0.13 2.55 6.61 -3.60 -0.02 2.53 16 23 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 24 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 25 H 0.09 1.87 5.46 -51.93 -0.28 1.58 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.07 1.04 6.04 -51.93 -0.31 0.73 16 28 H 0.05 0.58 8.08 -51.93 -0.42 0.16 16 29 H 0.09 1.12 7.97 -51.93 -0.41 0.70 16 30 H 0.18 1.57 8.06 -52.49 -0.42 1.15 16 31 H 0.20 1.24 8.06 -52.49 -0.42 0.81 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.08 1.06 7.99 -51.93 -0.41 0.65 16 34 H 0.09 1.94 7.04 -51.93 -0.37 1.57 16 35 H 0.05 0.98 8.14 -51.92 -0.42 0.55 16 LS Contribution 302.93 15.07 4.57 4.57 Total: -1.00 -35.05 302.93 -8.32 -43.37 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -4.18 Total: 0.94 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: -0.18 Total: 9.80 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: -1.08 Total: -53.29 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: 0.08 Total: -18.78 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -2.50 Total: -1.59 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -35.05 -8.32 -43.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331073527.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.857 kcal (2) G-P(sol) polarization free energy of solvation -35.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds