Wall clock time and date at job start Wed Apr 15 2020 11:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86795 * 120.00118 * 2 1 4 4 H 1.48497 * 109.47234 * 89.99969 * 3 2 1 5 5 H 1.48504 * 109.46981 * 210.00088 * 3 2 1 6 6 H 1.48500 * 109.47228 * 329.99734 * 3 2 1 7 7 C 1.40044 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00127 * 179.97438 * 7 2 1 9 9 C 1.46376 * 120.00321 * 359.97438 * 7 2 1 10 10 O 1.21687 * 119.99681 * 354.99925 * 9 7 2 11 11 N 1.34777 * 120.00313 * 175.00114 * 9 7 2 12 12 C 1.47077 * 120.87886 * 4.94953 * 11 9 7 13 13 C 1.53698 * 108.27700 * 128.75585 * 12 11 9 14 14 N 1.46898 * 109.25562 * 54.08236 * 13 12 11 15 15 C 1.46897 * 111.00153 * 172.60616 * 14 13 12 16 16 C 1.50703 * 109.47390 * 294.30172 * 15 14 13 17 17 C 1.33642 * 122.74893 * 94.72867 * 16 15 14 18 18 S 1.76193 * 107.92195 * 179.97438 * 17 16 15 19 19 C 1.70977 * 90.28395 * 0.27484 * 18 17 16 20 20 N 1.29028 * 110.16607 * 359.84151 * 19 18 17 21 21 C 1.46905 * 111.27013 * 296.75466 * 14 13 12 22 22 C 1.47076 * 120.88062 * 185.22734 * 11 9 7 23 23 H 0.97000 * 120.00181 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.62715 * 248.52147 * 12 11 9 25 25 H 1.09000 * 109.63081 * 9.10385 * 12 11 9 26 26 H 1.09001 * 109.64838 * 294.07883 * 13 12 11 27 27 H 1.08999 * 109.44526 * 173.95833 * 13 12 11 28 28 H 1.09003 * 109.47098 * 54.30008 * 15 14 13 29 29 H 1.09003 * 109.47503 * 174.29843 * 15 14 13 30 30 H 1.07995 * 126.03455 * 0.04213 * 17 16 15 31 31 H 1.08000 * 124.91321 * 179.83691 * 19 18 17 32 32 H 1.08994 * 109.49159 * 303.15220 * 21 14 13 33 33 H 1.08996 * 109.49043 * 183.06336 * 21 14 13 34 34 H 1.08999 * 109.63197 * 350.89564 * 22 11 9 35 35 H 1.09008 * 109.62635 * 111.48013 * 22 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4882 2.0464 1.4000 5 1 3.5383 1.4400 -0.7001 6 1 1.4383 2.6526 -0.7001 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0617 -2.4825 0.0918 11 7 1.9449 -3.6455 -0.1028 12 6 3.4155 -3.6728 -0.1066 13 6 3.8814 -4.6906 0.9466 14 7 3.2360 -5.9847 0.6885 15 6 3.7848 -7.0303 1.5623 16 6 5.2319 -7.2673 1.2146 17 6 6.2376 -6.6647 1.8560 18 16 7.7482 -7.2205 1.1392 19 6 6.8769 -8.2016 0.0430 20 7 5.6089 -8.0808 0.2489 21 6 1.7771 -5.8907 0.8322 22 6 1.2249 -4.9226 -0.2195 23 1 -0.4850 0.8400 0.0004 24 1 3.7736 -3.9711 -1.0920 25 1 3.8007 -2.6840 0.1423 26 1 3.6077 -4.3397 1.9417 27 1 4.9637 -4.8055 0.8864 28 1 3.7085 -6.7119 2.6020 29 1 3.2217 -7.9531 1.4227 30 1 6.1414 -5.9622 2.6705 31 1 7.3234 -8.8312 -0.7124 32 1 1.5327 -5.5231 1.8288 33 1 1.3333 -6.8758 0.6885 34 1 0.1612 -4.7606 -0.0453 35 1 1.3766 -5.3387 -1.2156 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331073527.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:37 Heat of formation + Delta-G solvation = 3.837913 kcal Electronic energy + Delta-G solvation = -19722.271217 eV Core-core repulsion = 16653.575775 eV Total energy + Delta-G solvation = -3068.695441 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.06478 -40.12977 -38.23606 -35.25728 -34.61532 -32.43355 -31.51981 -29.38654 -28.09252 -26.35493 -24.79499 -24.54426 -22.45382 -20.58204 -20.48007 -18.95192 -18.43096 -17.83365 -16.74470 -16.68474 -16.08069 -16.06165 -15.87618 -15.56449 -15.32059 -14.78082 -14.43064 -14.20613 -14.07249 -13.71153 -13.33794 -13.11761 -12.94520 -12.71516 -12.67216 -12.30401 -12.22520 -12.00504 -11.91850 -11.73761 -10.93752 -10.53006 -10.33914 -9.80770 -9.78905 -9.47730 -9.02328 -8.29806 -6.85090 -0.16572 0.55268 0.84646 1.39706 1.41240 1.56539 1.79829 2.23404 2.45072 2.75773 3.06832 3.32649 3.58404 3.97669 4.04179 4.09983 4.17960 4.34203 4.39305 4.41469 4.47268 4.58524 4.64649 4.75649 4.80419 4.86033 4.93376 5.15121 5.17212 5.36892 5.71392 5.98366 6.00758 6.12279 6.39740 6.86956 6.88187 7.40863 8.45179 8.66445 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.025202 B = 0.004145 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.763997 B = 6752.931272 C = 7606.269099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.029 3.971 3 Si 0.996 3.004 4 H -0.261 1.261 5 H -0.247 1.247 6 H -0.274 1.274 7 C -0.569 4.569 8 H 0.094 0.906 9 C 0.540 3.460 10 O -0.633 6.633 11 N -0.647 5.647 12 C 0.127 3.873 13 C 0.052 3.948 14 N -0.535 5.535 15 C 0.129 3.871 16 C 0.061 3.939 17 C -0.260 4.260 18 S 0.159 5.841 19 C 0.015 3.985 20 N -0.491 5.491 21 C 0.061 3.939 22 C 0.123 3.877 23 H 0.274 0.726 24 H 0.054 0.946 25 H 0.088 0.912 26 H 0.029 0.971 27 H 0.096 0.904 28 H 0.061 0.939 29 H 0.093 0.907 30 H 0.189 0.811 31 H 0.225 0.775 32 H 0.025 0.975 33 H 0.104 0.896 34 H 0.059 0.941 35 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.341 -13.773 3.837 23.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.186 4.186 3 Si 0.815 3.185 4 H -0.185 1.185 5 H -0.170 1.170 6 H -0.199 1.199 7 C -0.605 4.605 8 H 0.111 0.889 9 C 0.347 3.653 10 O -0.520 6.520 11 N -0.384 5.384 12 C 0.004 3.996 13 C -0.076 4.076 14 N -0.260 5.260 15 C 0.000 4.000 16 C -0.072 4.072 17 C -0.400 4.400 18 S 0.412 5.588 19 C -0.282 4.282 20 N -0.205 5.205 21 C -0.067 4.067 22 C -0.001 4.001 23 H 0.084 0.916 24 H 0.072 0.928 25 H 0.106 0.894 26 H 0.048 0.952 27 H 0.114 0.886 28 H 0.079 0.921 29 H 0.112 0.888 30 H 0.206 0.794 31 H 0.242 0.758 32 H 0.043 0.957 33 H 0.122 0.878 34 H 0.077 0.923 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 18.323 -13.967 3.214 23.263 hybrid contribution -1.255 1.023 0.844 1.826 sum 17.068 -12.944 4.058 21.802 Atomic orbital electron populations 1.70194 1.09609 1.28930 1.36549 1.27003 0.95491 1.04963 0.91147 0.85045 0.78891 0.75080 0.79475 1.18535 1.16974 1.19877 1.21493 0.94778 0.89742 1.54515 0.88865 1.18691 0.86583 0.84138 0.75918 1.90532 1.16582 1.87371 1.57526 1.48131 1.06514 1.05548 1.78224 1.21697 0.80170 0.99478 0.98264 1.22543 0.99654 0.88614 0.96837 1.61832 1.04060 1.05772 1.54349 1.20561 0.89196 0.95779 0.94500 1.20117 0.97100 0.96124 0.93821 1.27179 0.95063 1.08840 1.08928 1.83839 1.09488 1.37980 1.27532 1.28933 0.91329 1.03653 1.04323 1.66096 1.16858 1.19658 1.17934 1.22332 0.87574 0.99994 0.96838 1.21307 0.96419 0.84072 0.98334 0.91605 0.92774 0.89424 0.95231 0.88574 0.92132 0.88827 0.79417 0.75841 0.95654 0.87818 0.92283 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.96 11.84 21.83 0.26 -50.71 16 2 C 0.03 1.62 5.50 85.30 0.47 2.09 16 3 Si 1.00 40.86 29.56 68.60 2.03 42.89 16 4 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 5 H -0.25 -9.32 7.11 99.48 0.71 -8.61 16 6 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 7 C -0.57 -32.45 8.86 24.83 0.22 -32.23 16 8 H 0.09 4.73 5.74 -2.91 -0.02 4.71 16 9 C 0.54 32.27 7.63 86.36 0.66 32.92 16 10 O -0.63 -43.46 14.49 -4.31 -0.06 -43.52 16 11 N -0.65 -30.94 3.00 -822.12 -2.47 -33.41 16 12 C 0.13 4.89 6.50 86.50 0.56 5.45 16 13 C 0.05 1.61 5.43 86.54 0.47 2.08 16 14 N -0.54 -15.95 4.62 -898.87 -4.15 -20.10 16 15 C 0.13 3.10 5.41 85.56 0.46 3.56 16 16 C 0.06 1.39 5.58 41.52 0.23 1.62 16 17 C -0.26 -4.74 9.68 66.78 0.65 -4.09 16 18 S 0.16 2.22 23.22 -56.49 -1.31 0.90 16 19 C 0.02 0.25 12.23 130.65 1.60 1.85 16 20 N -0.49 -11.68 10.53 -191.55 -2.02 -13.70 16 21 C 0.06 1.99 5.62 86.38 0.49 2.47 16 22 C 0.12 5.12 6.61 86.35 0.57 5.69 16 23 H 0.27 15.35 8.29 -92.71 -0.77 14.58 16 24 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 25 H 0.09 3.43 5.46 -2.39 -0.01 3.42 16 26 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.10 2.53 6.04 -2.39 -0.01 2.51 16 28 H 0.06 1.30 8.08 -2.39 -0.02 1.28 16 29 H 0.09 2.16 7.97 -2.39 -0.02 2.14 16 30 H 0.19 2.80 8.06 -2.91 -0.02 2.78 16 31 H 0.23 2.11 8.06 -2.91 -0.02 2.08 16 32 H 0.03 0.87 8.14 -2.39 -0.02 0.86 16 33 H 0.10 2.78 7.99 -2.39 -0.02 2.76 16 34 H 0.06 2.78 7.04 -2.39 -0.02 2.76 16 35 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 Total: -1.00 -79.18 302.93 -0.24 -79.42 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 1.11 Total: 16.80 kcal Atomic # 6 Polarization: 15.04 SS G_CDS: 6.37 Total: 21.42 kcal Atomic # 7 Polarization: -109.53 SS G_CDS: -8.38 Total: -117.91 kcal Atomic # 8 Polarization: -43.46 SS G_CDS: -0.06 Total: -43.52 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.89 kcal Atomic # 16 Polarization: 2.22 SS G_CDS: -1.31 Total: 0.90 kcal Total: -79.18 -0.24 -79.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331073527.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.263 kcal (2) G-P(sol) polarization free energy of solvation -79.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds