Wall clock time and date at job start Wed Apr 15 2020 11:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 119.99840 * 2 1 4 4 H 1.48491 * 109.47486 * 85.28559 * 3 2 1 5 5 H 1.48500 * 109.47399 * 325.28488 * 3 2 1 6 6 H 1.48508 * 109.47157 * 205.29003 * 3 2 1 7 7 C 1.38813 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00277 * 196.34276 * 7 2 1 9 9 N 1.36940 * 119.99368 * 16.34640 * 7 2 1 10 10 C 1.43466 * 118.93582 * 205.86173 * 9 7 2 11 11 C 1.53799 * 107.96203 * 273.61357 * 10 9 7 12 12 C 1.47135 * 111.83914 * 281.66444 * 11 10 9 13 13 N 1.48215 * 110.34081 * 58.29632 * 12 11 10 14 14 C 1.34786 * 119.96910 * 102.46838 * 13 12 11 15 15 O 1.21567 * 119.99765 * 357.15527 * 14 13 12 16 16 C 1.47687 * 119.99793 * 177.15279 * 14 13 12 17 17 C 1.39484 * 122.10206 * 186.66337 * 16 14 13 18 18 C 1.35002 * 111.68742 * 179.97438 * 17 16 14 19 19 S 1.71771 * 105.44743 * 0.02562 * 18 17 16 20 20 N 1.30609 * 122.10803 * 6.37745 * 16 14 13 21 21 C 1.43621 * 120.06540 * 282.48877 * 13 12 11 22 22 C 1.48853 * 118.94318 * 25.59642 * 9 7 2 23 23 H 0.96997 * 119.99903 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.76193 * 33.22493 * 10 9 7 25 25 H 1.09000 * 109.76612 * 153.94207 * 10 9 7 26 26 H 1.09003 * 109.00128 * 42.27217 * 11 10 9 27 27 H 1.08999 * 109.00886 * 161.05696 * 11 10 9 28 28 H 1.09003 * 109.32897 * 178.56005 * 12 11 10 29 29 H 1.09001 * 109.32786 * 298.20785 * 12 11 10 30 30 H 1.07997 * 124.16077 * 0.02562 * 17 16 14 31 31 H 1.07998 * 127.28097 * 180.02562 * 18 17 16 32 32 H 1.08997 * 108.88151 * 211.44710 * 21 13 12 33 33 H 1.09004 * 108.86706 * 329.88924 * 21 13 12 34 34 H 1.09003 * 109.47412 * 260.62202 * 22 9 7 35 35 H 1.08992 * 109.48516 * 20.65725 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3980 2.1040 1.3952 5 1 1.5010 2.6219 -0.7973 6 1 3.5940 1.4135 -0.5981 7 6 2.0103 -1.2021 0.0005 8 1 3.0576 -1.2209 0.2637 9 7 1.3670 -2.3642 -0.3327 10 6 1.8661 -3.6064 0.1831 11 6 2.9590 -4.1123 -0.7735 12 6 2.3870 -4.7340 -1.9782 13 7 1.5222 -3.7675 -2.6956 14 6 1.9772 -3.1508 -3.8044 15 8 3.1144 -3.3481 -4.1863 16 6 1.0943 -2.2356 -4.5553 17 6 1.4698 -1.6812 -5.7789 18 6 0.5067 -0.8784 -6.2794 19 16 -0.7688 -0.9224 -5.1298 20 7 -0.0894 -1.8987 -4.1182 21 6 0.1999 -3.4869 -2.2102 22 6 0.1690 -2.2973 -1.2137 23 1 -0.4850 0.8400 0.0004 24 1 2.2887 -3.4501 1.1757 25 1 1.0569 -4.3346 0.2376 26 1 3.5866 -3.2724 -1.0713 27 1 3.5742 -4.8464 -0.2532 28 1 3.1943 -5.0538 -2.6371 29 1 1.7924 -5.6007 -1.6892 30 1 2.4145 -1.8714 -6.2665 31 1 0.5326 -0.3253 -7.2067 32 1 -0.4449 -3.2542 -3.0576 33 1 -0.1869 -4.3739 -1.7083 34 1 -0.7334 -2.3523 -0.6047 35 1 0.1772 -1.3587 -1.7677 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981420900.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:38 Heat of formation + Delta-G solvation = 61.372865 kcal Electronic energy + Delta-G solvation = -21043.630489 eV Core-core repulsion = 17977.429950 eV Total energy + Delta-G solvation = -3066.200538 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.38072 -38.25283 -36.80040 -34.22999 -32.76778 -31.19810 -30.71358 -27.70718 -26.38577 -25.02589 -23.58568 -22.40419 -20.55257 -19.68913 -18.74512 -18.31883 -16.96461 -16.23109 -15.87302 -15.15149 -14.90746 -14.36259 -13.99468 -13.73697 -13.41107 -13.20331 -13.00148 -12.88141 -12.41510 -12.19129 -11.96402 -11.35082 -11.03295 -11.00410 -10.72603 -10.49889 -10.36520 -10.13475 -10.11240 -9.85443 -9.60808 -9.56626 -9.22478 -8.60839 -8.38394 -7.95561 -6.61472 -5.73396 -3.14255 0.83539 1.66819 2.04747 2.08326 3.38160 3.45342 3.47840 3.50428 3.71391 4.54977 4.83508 5.06435 5.37691 5.44894 5.55188 5.60677 5.72885 5.76064 5.86334 5.94139 5.98407 6.25378 6.30782 6.50267 6.52002 6.60314 6.65942 6.87252 7.00361 7.12674 7.51809 7.66625 7.86847 8.00301 8.51427 8.59893 9.27664 9.96236 10.41902 11.34213 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.013798 B = 0.009384 C = 0.006874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.787618 B = 2982.973375 C = 4072.557192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.005 3.995 3 Si 0.893 3.107 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.251 4.251 8 H 0.062 0.938 9 N -0.593 5.593 10 C 0.162 3.838 11 C -0.170 4.170 12 C 0.130 3.870 13 N -0.562 5.562 14 C 0.591 3.409 15 O -0.550 6.550 16 C 0.055 3.945 17 C -0.135 4.135 18 C -0.288 4.288 19 S 0.434 5.566 20 N -0.481 5.481 21 C 0.067 3.933 22 C 0.174 3.826 23 H 0.251 0.749 24 H 0.045 0.955 25 H 0.033 0.967 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.167 0.833 31 H 0.181 0.819 32 H 0.108 0.892 33 H 0.051 0.949 34 H 0.037 0.963 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.779 -5.526 -10.779 12.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.723 3.277 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.381 4.381 8 H 0.080 0.920 9 N -0.314 5.314 10 C 0.033 3.967 11 C -0.212 4.212 12 C 0.009 3.991 13 N -0.292 5.292 14 C 0.375 3.625 15 O -0.428 6.428 16 C -0.119 4.119 17 C -0.168 4.168 18 C -0.437 4.437 19 S 0.590 5.410 20 N -0.315 5.315 21 C -0.060 4.060 22 C 0.048 3.952 23 H 0.061 0.939 24 H 0.063 0.937 25 H 0.051 0.949 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.184 0.816 31 H 0.198 0.802 32 H 0.125 0.875 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.184 -5.165 -9.968 11.981 hybrid contribution 2.236 0.672 -0.577 2.405 sum -1.948 -4.493 -10.545 11.627 Atomic orbital electron populations 1.70037 1.05047 1.25152 1.54638 1.24933 0.95224 0.98057 1.01089 0.86418 0.79442 0.84248 0.77598 1.21458 1.21605 1.20552 1.19149 0.92514 0.85247 1.41206 0.92011 1.43749 1.32208 1.01771 1.53686 1.20280 0.93509 0.88509 0.94383 1.21874 1.01141 1.00781 0.97365 1.20632 0.94160 0.90191 0.94160 1.47257 1.16438 1.41299 1.24204 1.17226 0.85529 0.79288 0.80507 1.90718 1.18156 1.64092 1.69839 1.21192 0.91863 1.02906 0.95903 1.21334 1.02102 0.98419 0.94911 1.27095 1.02206 1.06547 1.07873 1.80737 1.20787 1.36173 1.03297 1.73142 1.13447 1.16723 1.28218 1.22844 0.82692 0.99916 1.00554 1.21872 0.88569 0.95488 0.89270 0.93852 0.93688 0.94896 0.91283 0.92525 0.90397 0.91854 0.81570 0.80172 0.87487 0.93057 0.94531 0.90033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.20 11.06 55.49 0.61 -25.59 16 2 C 0.01 0.14 4.89 -17.43 -0.09 0.06 16 3 Si 0.89 22.45 29.58 -169.99 -5.03 17.42 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.25 -7.06 9.26 -15.06 -0.14 -7.20 16 8 H 0.06 1.75 7.88 -52.49 -0.41 1.34 16 9 N -0.59 -14.92 2.53 -171.78 -0.43 -15.35 16 10 C 0.16 3.42 5.63 -5.23 -0.03 3.39 16 11 C -0.17 -3.21 5.64 -29.13 -0.16 -3.37 16 12 C 0.13 2.28 5.68 -5.91 -0.03 2.24 16 13 N -0.56 -11.02 2.46 -177.60 -0.44 -11.46 16 14 C 0.59 12.13 7.66 -12.40 -0.09 12.04 16 15 O -0.55 -12.18 16.13 5.31 0.09 -12.09 16 16 C 0.06 1.01 6.49 -84.06 -0.55 0.47 16 17 C -0.13 -2.04 9.98 -40.27 -0.40 -2.44 16 18 C -0.29 -3.50 11.41 29.58 0.34 -3.16 16 19 S 0.43 5.78 23.20 -107.50 -2.49 3.28 16 20 N -0.48 -8.47 6.15 24.85 0.15 -8.32 16 21 C 0.07 1.30 4.80 -4.39 -0.02 1.28 16 22 C 0.17 4.14 5.02 -1.57 -0.01 4.13 16 23 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 24 H 0.04 0.96 8.02 -51.93 -0.42 0.55 16 25 H 0.03 0.64 7.59 -51.93 -0.39 0.25 16 26 H 0.07 1.54 7.91 -51.93 -0.41 1.13 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.08 1.35 7.16 -51.93 -0.37 0.98 16 29 H 0.06 0.94 8.05 -51.93 -0.42 0.52 16 30 H 0.17 2.34 8.00 -52.49 -0.42 1.92 16 31 H 0.18 1.52 8.06 -52.49 -0.42 1.10 16 32 H 0.11 1.99 4.79 -57.28 -0.27 1.71 16 33 H 0.05 0.90 7.73 -51.93 -0.40 0.50 16 34 H 0.04 0.94 7.99 -51.93 -0.42 0.52 16 35 H 0.08 2.16 5.61 -51.93 -0.29 1.87 16 LS Contribution 294.12 15.07 4.43 4.43 Total: -1.00 -32.44 294.12 -8.50 -40.94 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -4.21 Total: -0.70 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: -1.19 Total: 7.43 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: -0.11 Total: -60.72 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.09 Total: -12.09 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.03 Total: 17.42 kcal Atomic # 16 Polarization: 5.78 SS G_CDS: -2.49 Total: 3.28 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.44 -8.50 -40.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981420900.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.313 kcal (2) G-P(sol) polarization free energy of solvation -32.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds