Wall clock time and date at job start Wed Apr 15 2020 11:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 119.99840 * 2 1 4 4 H 1.48491 * 109.47486 * 85.28559 * 3 2 1 5 5 H 1.48500 * 109.47399 * 325.28488 * 3 2 1 6 6 H 1.48508 * 109.47157 * 205.29003 * 3 2 1 7 7 C 1.38813 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00277 * 196.34276 * 7 2 1 9 9 N 1.36940 * 119.99368 * 16.34640 * 7 2 1 10 10 C 1.43466 * 118.93582 * 205.86173 * 9 7 2 11 11 C 1.53799 * 107.96203 * 273.61357 * 10 9 7 12 12 C 1.47135 * 111.83914 * 281.66444 * 11 10 9 13 13 N 1.48215 * 110.34081 * 58.29632 * 12 11 10 14 14 C 1.34786 * 119.96910 * 102.46838 * 13 12 11 15 15 O 1.21567 * 119.99765 * 357.15527 * 14 13 12 16 16 C 1.47687 * 119.99793 * 177.15279 * 14 13 12 17 17 C 1.39484 * 122.10206 * 186.66337 * 16 14 13 18 18 C 1.35002 * 111.68742 * 179.97438 * 17 16 14 19 19 S 1.71771 * 105.44743 * 0.02562 * 18 17 16 20 20 N 1.30609 * 122.10803 * 6.37745 * 16 14 13 21 21 C 1.43621 * 120.06540 * 282.48877 * 13 12 11 22 22 C 1.48853 * 118.94318 * 25.59642 * 9 7 2 23 23 H 0.96997 * 119.99903 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.76193 * 33.22493 * 10 9 7 25 25 H 1.09000 * 109.76612 * 153.94207 * 10 9 7 26 26 H 1.09003 * 109.00128 * 42.27217 * 11 10 9 27 27 H 1.08999 * 109.00886 * 161.05696 * 11 10 9 28 28 H 1.09003 * 109.32897 * 178.56005 * 12 11 10 29 29 H 1.09001 * 109.32786 * 298.20785 * 12 11 10 30 30 H 1.07997 * 124.16077 * 0.02562 * 17 16 14 31 31 H 1.07998 * 127.28097 * 180.02562 * 18 17 16 32 32 H 1.08997 * 108.88151 * 211.44710 * 21 13 12 33 33 H 1.09004 * 108.86706 * 329.88924 * 21 13 12 34 34 H 1.09003 * 109.47412 * 260.62202 * 22 9 7 35 35 H 1.08992 * 109.48516 * 20.65725 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3980 2.1040 1.3952 5 1 1.5010 2.6219 -0.7973 6 1 3.5940 1.4135 -0.5981 7 6 2.0103 -1.2021 0.0005 8 1 3.0576 -1.2209 0.2637 9 7 1.3670 -2.3642 -0.3327 10 6 1.8661 -3.6064 0.1831 11 6 2.9590 -4.1123 -0.7735 12 6 2.3870 -4.7340 -1.9782 13 7 1.5222 -3.7675 -2.6956 14 6 1.9772 -3.1508 -3.8044 15 8 3.1144 -3.3481 -4.1863 16 6 1.0943 -2.2356 -4.5553 17 6 1.4698 -1.6812 -5.7789 18 6 0.5067 -0.8784 -6.2794 19 16 -0.7688 -0.9224 -5.1298 20 7 -0.0894 -1.8987 -4.1182 21 6 0.1999 -3.4869 -2.2102 22 6 0.1690 -2.2973 -1.2137 23 1 -0.4850 0.8400 0.0004 24 1 2.2887 -3.4501 1.1757 25 1 1.0569 -4.3346 0.2376 26 1 3.5866 -3.2724 -1.0713 27 1 3.5742 -4.8464 -0.2532 28 1 3.1943 -5.0538 -2.6371 29 1 1.7924 -5.6007 -1.6892 30 1 2.4145 -1.8714 -6.2665 31 1 0.5326 -0.3253 -7.2067 32 1 -0.4449 -3.2542 -3.0576 33 1 -0.1869 -4.3739 -1.7083 34 1 -0.7334 -2.3523 -0.6047 35 1 0.1772 -1.3587 -1.7677 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981420900.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:37 Heat of formation + Delta-G solvation = 40.706824 kcal Electronic energy + Delta-G solvation = -21044.526635 eV Core-core repulsion = 17977.429950 eV Total energy + Delta-G solvation = -3067.096685 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.77677 -39.62901 -38.46788 -36.00784 -34.39012 -32.82480 -32.25034 -29.41180 -27.95148 -26.59647 -25.46056 -23.84040 -21.90099 -21.43110 -20.17479 -19.51857 -18.69649 -17.91079 -17.45455 -16.77527 -16.43431 -16.06397 -15.69588 -15.27552 -14.89706 -14.67716 -14.49031 -14.18386 -14.03889 -13.86649 -13.56930 -13.14085 -12.93701 -12.58489 -12.43074 -12.13547 -12.12318 -11.85545 -11.73884 -11.50344 -11.42631 -10.80689 -10.70811 -10.40490 -9.81974 -9.47251 -8.64081 -7.85946 -5.28987 -0.34415 0.60808 0.80427 0.90525 1.36758 1.38901 1.48377 2.05855 2.28054 2.48231 3.26016 3.55278 3.80801 3.87642 4.10345 4.24147 4.32581 4.45133 4.51628 4.60271 4.62732 4.76112 4.87277 4.88958 5.00734 5.15079 5.21882 5.28217 5.39250 5.49217 5.60356 5.77836 5.84005 6.40520 6.45554 7.08449 7.18199 7.96424 8.35283 9.18199 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.013798 B = 0.009384 C = 0.006874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.787618 B = 2982.973375 C = 4072.557192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.040 4.040 3 Si 0.947 3.053 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.284 1.284 7 C -0.261 4.261 8 H 0.050 0.950 9 N -0.608 5.608 10 C 0.156 3.844 11 C -0.154 4.154 12 C 0.125 3.875 13 N -0.567 5.567 14 C 0.579 3.421 15 O -0.578 6.578 16 C 0.027 3.973 17 C -0.156 4.156 18 C -0.259 4.259 19 S 0.488 5.512 20 N -0.525 5.525 21 C 0.081 3.919 22 C 0.184 3.816 23 H 0.249 0.751 24 H 0.036 0.964 25 H 0.055 0.945 26 H 0.026 0.974 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.171 0.829 31 H 0.225 0.775 32 H 0.120 0.880 33 H 0.074 0.926 34 H 0.012 0.988 35 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.258 -5.760 -12.109 13.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.236 4.236 3 Si 0.776 3.224 4 H -0.209 1.209 5 H -0.213 1.213 6 H -0.210 1.210 7 C -0.392 4.392 8 H 0.068 0.932 9 N -0.330 5.330 10 C 0.029 3.971 11 C -0.195 4.195 12 C 0.004 3.996 13 N -0.296 5.296 14 C 0.364 3.636 15 O -0.459 6.459 16 C -0.146 4.146 17 C -0.188 4.188 18 C -0.408 4.408 19 S 0.644 5.356 20 N -0.360 5.360 21 C -0.046 4.046 22 C 0.059 3.941 23 H 0.058 0.942 24 H 0.055 0.945 25 H 0.073 0.927 26 H 0.045 0.955 27 H 0.110 0.890 28 H 0.098 0.902 29 H 0.118 0.882 30 H 0.189 0.811 31 H 0.242 0.758 32 H 0.137 0.863 33 H 0.092 0.908 34 H 0.030 0.970 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.651 -5.434 -11.288 13.363 hybrid contribution 2.338 0.785 -0.189 2.473 sum -2.313 -4.649 -11.477 12.597 Atomic orbital electron populations 1.70161 1.05885 1.25395 1.55629 1.25513 0.95996 1.00462 1.01598 0.85579 0.78066 0.81167 0.77620 1.20894 1.21279 1.20987 1.19311 0.92250 0.86863 1.40800 0.93238 1.43983 1.32367 1.02241 1.54436 1.20461 0.94675 0.87566 0.94390 1.21667 1.00020 1.00103 0.97705 1.20814 0.94743 0.90763 0.93280 1.47408 1.16629 1.41408 1.24187 1.17721 0.85629 0.79394 0.80815 1.90676 1.19321 1.65187 1.70683 1.21171 0.92278 1.03998 0.97112 1.21432 1.03286 0.99645 0.94460 1.27546 1.00224 1.04570 1.08423 1.80454 1.19539 1.33638 1.01985 1.72739 1.13740 1.18774 1.30781 1.22604 0.83184 0.98757 1.00088 1.21616 0.87048 0.96266 0.89220 0.94173 0.94523 0.92677 0.95496 0.89005 0.90249 0.88226 0.81123 0.75836 0.86323 0.90799 0.97047 0.92987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.49 11.06 21.65 0.24 -54.26 16 2 C -0.04 -2.29 4.89 84.86 0.42 -1.87 16 3 Si 0.95 46.76 29.58 68.60 2.03 48.79 16 4 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 5 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 6 H -0.28 -14.07 7.11 99.48 0.71 -13.37 16 7 C -0.26 -15.00 9.26 84.03 0.78 -14.23 16 8 H 0.05 2.90 7.88 -2.91 -0.02 2.87 16 9 N -0.61 -30.97 2.53 -697.39 -1.76 -32.74 16 10 C 0.16 6.50 5.63 87.21 0.49 7.00 16 11 C -0.15 -5.65 5.64 29.04 0.16 -5.49 16 12 C 0.12 4.17 5.68 84.23 0.48 4.65 16 13 N -0.57 -21.91 2.46 -834.08 -2.05 -23.96 16 14 C 0.58 23.92 7.66 86.74 0.66 24.58 16 15 O -0.58 -25.97 16.13 -3.93 -0.06 -26.03 16 16 C 0.03 0.96 6.49 42.12 0.27 1.24 16 17 C -0.16 -4.52 9.98 21.83 0.22 -4.30 16 18 C -0.26 -5.46 11.41 67.07 0.77 -4.70 16 19 S 0.49 11.95 23.20 -56.49 -1.31 10.64 16 20 N -0.52 -18.12 6.15 -75.30 -0.46 -18.58 16 21 C 0.08 3.07 4.80 87.67 0.42 3.49 16 22 C 0.18 8.89 5.02 86.69 0.44 9.32 16 23 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 24 H 0.04 1.56 8.02 -2.39 -0.02 1.54 16 25 H 0.05 2.04 7.59 -2.39 -0.02 2.02 16 26 H 0.03 1.20 7.91 -2.39 -0.02 1.18 16 27 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 28 H 0.08 2.66 7.16 -2.39 -0.02 2.64 16 29 H 0.10 2.62 8.05 -2.39 -0.02 2.61 16 30 H 0.17 4.67 8.00 -2.91 -0.02 4.65 16 31 H 0.22 2.63 8.06 -2.91 -0.02 2.61 16 32 H 0.12 4.34 4.79 -12.96 -0.06 4.27 16 33 H 0.07 2.45 7.73 -2.39 -0.02 2.43 16 34 H 0.01 0.60 7.99 -2.39 -0.02 0.58 16 35 H 0.05 2.81 5.61 -2.39 -0.01 2.80 16 Total: -1.00 -72.35 294.12 2.77 -69.58 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: 1.06 Total: 6.88 kcal Atomic # 6 Polarization: 14.58 SS G_CDS: 5.10 Total: 19.68 kcal Atomic # 7 Polarization: -125.50 SS G_CDS: -4.04 Total: -129.54 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -0.06 Total: -26.03 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Atomic # 16 Polarization: 11.95 SS G_CDS: -1.31 Total: 10.64 kcal Total: -72.35 2.77 -69.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981420900.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.283 kcal (2) G-P(sol) polarization free energy of solvation -72.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds