Wall clock time and date at job start Wed Apr 15 2020 11:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99723 * 2 1 4 4 H 1.48501 * 109.46882 * 239.99691 * 3 2 1 5 5 H 1.48500 * 109.47416 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46911 * 120.00237 * 3 2 1 7 7 C 1.38812 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00172 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99632 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99627 * 179.97438 * 9 7 2 11 11 C 1.53039 * 109.45888 * 154.99985 * 10 9 7 12 12 C 1.53193 * 109.31085 * 181.37239 * 11 10 9 13 13 N 1.46920 * 108.77778 * 305.36541 * 12 11 10 14 14 C 1.34777 * 120.63614 * 233.58575 * 13 12 11 15 15 O 1.21684 * 120.00556 * 183.60421 * 14 13 12 16 16 C 1.46686 * 119.99675 * 3.60379 * 14 13 12 17 17 C 1.35659 * 126.13219 * 136.21737 * 16 14 13 18 18 N 1.30938 * 114.19282 * 179.73766 * 17 16 14 19 19 C 1.29429 * 117.36668 * 359.97438 * 18 17 16 20 20 S 1.70954 * 110.39078 * 0.02562 * 19 18 17 21 21 C 1.46924 * 118.73916 * 53.86461 * 13 12 11 22 22 C 1.53041 * 109.45205 * 275.06405 * 10 9 7 23 23 H 0.97001 * 119.99928 * 0.02562 * 1 2 3 24 24 H 0.96995 * 120.00725 * 0.02562 * 9 7 2 25 25 H 1.09008 * 109.46159 * 35.02956 * 10 9 7 26 26 H 1.09000 * 109.49837 * 61.42596 * 11 10 9 27 27 H 1.08999 * 109.52476 * 301.33853 * 11 10 9 28 28 H 1.09007 * 109.58480 * 185.57788 * 12 11 10 29 29 H 1.08997 * 109.70346 * 65.22487 * 12 11 10 30 30 H 1.08003 * 122.90214 * 359.76974 * 17 16 14 31 31 H 1.08002 * 124.80565 * 179.97438 * 19 18 17 32 32 H 1.08998 * 109.58753 * 65.92302 * 21 13 12 33 33 H 1.09001 * 109.59227 * 186.34950 * 21 13 12 34 34 H 1.08999 * 109.49487 * 298.57450 * 22 10 9 35 35 H 1.09007 * 109.49603 * 58.66964 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 6 1.1809 -4.7524 0.6083 12 6 1.9623 -6.0697 0.6369 13 7 2.4405 -6.3655 -0.7204 14 6 2.1720 -7.5524 -1.2998 15 8 2.6287 -7.8107 -2.3977 16 6 1.3293 -8.5328 -0.6068 17 6 0.3344 -9.2680 -1.1637 18 7 -0.2657 -10.0785 -0.3286 19 6 0.1494 -10.0840 0.8973 20 16 1.4329 -8.9725 1.0965 21 6 3.2224 -5.3451 -1.4320 22 6 2.4221 -4.0338 -1.4395 23 1 -0.4850 0.8401 -0.0004 24 1 0.3556 -2.3881 -0.0005 25 1 2.9690 -3.5507 0.5876 26 1 0.2813 -4.8762 0.0054 27 1 0.9023 -4.4726 1.6243 28 1 1.3104 -6.8740 0.9780 29 1 2.8130 -5.9778 1.3121 30 1 0.0613 -9.1916 -2.2058 31 1 -0.2580 -10.7025 1.6834 32 1 4.1739 -5.1928 -0.9225 33 1 3.4022 -5.6710 -2.4565 34 1 1.5108 -4.1642 -2.0232 35 1 3.0274 -3.2421 -1.8811 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000990068384.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:43 Heat of formation + Delta-G solvation = 30.747541 kcal Electronic energy + Delta-G solvation = -19597.092126 eV Core-core repulsion = 16529.563573 eV Total energy + Delta-G solvation = -3067.528552 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.47317 -39.43948 -37.39857 -34.59271 -32.23664 -31.45718 -30.35808 -29.23464 -26.40270 -24.90761 -23.32594 -22.82379 -21.51273 -20.11887 -19.52013 -18.47844 -17.16337 -16.78822 -16.43193 -15.40527 -15.06049 -14.84778 -14.40390 -14.25159 -14.04239 -13.71769 -13.63541 -13.22709 -13.06036 -12.55220 -12.20532 -11.86850 -11.56658 -11.03436 -10.93273 -10.86749 -10.50379 -10.40230 -10.28135 -9.99236 -9.93262 -9.75197 -9.53319 -9.21955 -8.94387 -8.64537 -7.02740 -5.81523 -3.11187 0.08064 0.86259 1.28194 2.32925 2.74919 3.05162 3.40788 3.45582 3.46439 3.99046 4.39262 4.53849 4.85075 4.88140 5.07356 5.14076 5.28675 5.35382 5.47666 5.54990 5.69352 5.78809 5.81477 5.88367 6.12285 6.19799 6.35862 6.47037 6.49255 6.83105 6.97980 7.24635 7.35228 7.64382 7.98066 8.36536 9.47894 10.04256 10.38963 11.40881 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.033399 B = 0.003830 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.155695 B = 7309.442021 C = 7657.042263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.179 3.821 11 C -0.137 4.137 12 C 0.100 3.900 13 N -0.595 5.595 14 C 0.593 3.407 15 O -0.530 6.530 16 C -0.279 4.279 17 C 0.103 3.897 18 N -0.473 5.473 19 C 0.014 3.986 20 S 0.185 5.815 21 C 0.114 3.886 22 C -0.150 4.150 23 H 0.256 0.744 24 H 0.384 0.616 25 H 0.049 0.951 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.185 0.815 31 H 0.204 0.796 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.060 0.940 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.822 -19.043 4.174 19.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.364 5.364 10 C 0.068 3.932 11 C -0.176 4.176 12 C -0.024 4.024 13 N -0.328 5.328 14 C 0.378 3.622 15 O -0.408 6.408 16 C -0.403 4.403 17 C -0.053 4.053 18 N -0.187 5.187 19 C -0.281 4.281 20 S 0.439 5.561 21 C -0.008 4.008 22 C -0.191 4.191 23 H 0.066 0.934 24 H 0.217 0.783 25 H 0.067 0.933 26 H 0.084 0.916 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.202 0.798 31 H 0.220 0.780 32 H 0.087 0.913 33 H 0.106 0.894 34 H 0.079 0.921 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.336 -19.091 4.367 19.866 hybrid contribution -0.252 1.003 -0.803 1.310 sum 3.085 -18.088 3.564 18.692 Atomic orbital electron populations 1.69652 1.05148 1.25862 1.57378 1.24746 0.95492 0.97719 1.02797 0.86278 0.78545 0.83540 0.77870 1.21228 1.21690 1.21237 1.19186 0.90966 0.84060 1.43146 0.91170 1.42411 1.05785 0.99651 1.88551 1.20170 0.94387 0.86014 0.92580 1.22192 0.99215 0.93703 1.02540 1.22145 0.99117 0.98599 0.82584 1.48064 1.53222 1.14481 1.17007 1.16796 0.79686 0.80869 0.84832 1.90833 1.52084 1.77767 1.20105 1.25803 1.07601 1.09095 0.97774 1.22138 0.91522 0.90644 1.01034 1.66249 1.28932 1.21581 1.01892 1.28890 0.99118 1.02287 0.97758 1.84151 1.33643 1.32529 1.05777 1.21893 0.93694 0.87474 0.97753 1.22772 1.00182 0.94676 1.01511 0.93408 0.78252 0.93263 0.91645 0.90190 0.90292 0.90518 0.79833 0.77953 0.91288 0.89360 0.92114 0.90411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.62 13.06 55.49 0.72 -26.89 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 21.90 29.55 -169.99 -5.02 16.88 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 9 N -0.72 -17.35 5.12 -53.38 -0.27 -17.62 16 10 C 0.18 3.29 2.73 -67.89 -0.19 3.11 16 11 C -0.14 -2.06 5.55 -26.61 -0.15 -2.21 16 12 C 0.10 1.21 5.91 -3.71 -0.02 1.19 16 13 N -0.60 -8.27 2.97 -174.04 -0.52 -8.78 16 14 C 0.59 8.72 7.57 -12.85 -0.10 8.62 16 15 O -0.53 -9.36 16.51 5.20 0.09 -9.27 16 16 C -0.28 -3.39 5.53 -37.10 -0.21 -3.60 16 17 C 0.10 1.22 11.30 -18.86 -0.21 1.01 16 18 N -0.47 -5.30 10.51 -15.38 -0.16 -5.46 16 19 C 0.01 0.12 12.22 51.75 0.63 0.75 16 20 S 0.18 1.58 20.03 -107.50 -2.15 -0.58 16 21 C 0.11 1.65 6.45 -3.48 -0.02 1.63 16 22 C -0.15 -2.58 5.67 -26.38 -0.15 -2.73 16 23 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 24 H 0.38 9.89 7.80 -40.82 -0.32 9.57 16 25 H 0.05 0.91 8.08 -51.92 -0.42 0.49 16 26 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 28 H 0.08 0.84 3.96 -29.88 -0.12 0.72 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.18 2.02 8.06 -52.48 -0.42 1.60 16 31 H 0.20 0.89 8.06 -52.49 -0.42 0.46 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.09 1.33 7.02 -51.93 -0.36 0.96 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 305.39 15.07 4.60 4.60 Total: -1.00 -32.20 305.39 -7.52 -39.71 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -4.15 Total: 6.70 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -0.66 Total: 0.71 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: -0.23 Total: -58.76 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.09 Total: -9.27 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -2.15 Total: -0.58 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.20 -7.52 -39.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990068384.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.462 kcal (2) G-P(sol) polarization free energy of solvation -32.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds