Wall clock time and date at job start Wed Apr 15 2020 11:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99723 * 2 1 4 4 H 1.48501 * 109.46882 * 239.99691 * 3 2 1 5 5 H 1.48500 * 109.47416 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46911 * 120.00237 * 3 2 1 7 7 C 1.38812 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00172 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99632 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99627 * 179.97438 * 9 7 2 11 11 C 1.53039 * 109.45888 * 154.99985 * 10 9 7 12 12 C 1.53193 * 109.31085 * 181.37239 * 11 10 9 13 13 N 1.46920 * 108.77778 * 305.36541 * 12 11 10 14 14 C 1.34777 * 120.63614 * 233.58575 * 13 12 11 15 15 O 1.21684 * 120.00556 * 183.60421 * 14 13 12 16 16 C 1.46686 * 119.99675 * 3.60379 * 14 13 12 17 17 C 1.35659 * 126.13219 * 136.21737 * 16 14 13 18 18 N 1.30938 * 114.19282 * 179.73766 * 17 16 14 19 19 C 1.29429 * 117.36668 * 359.97438 * 18 17 16 20 20 S 1.70954 * 110.39078 * 0.02562 * 19 18 17 21 21 C 1.46924 * 118.73916 * 53.86461 * 13 12 11 22 22 C 1.53041 * 109.45205 * 275.06405 * 10 9 7 23 23 H 0.97001 * 119.99928 * 0.02562 * 1 2 3 24 24 H 0.96995 * 120.00725 * 0.02562 * 9 7 2 25 25 H 1.09008 * 109.46159 * 35.02956 * 10 9 7 26 26 H 1.09000 * 109.49837 * 61.42596 * 11 10 9 27 27 H 1.08999 * 109.52476 * 301.33853 * 11 10 9 28 28 H 1.09007 * 109.58480 * 185.57788 * 12 11 10 29 29 H 1.08997 * 109.70346 * 65.22487 * 12 11 10 30 30 H 1.08003 * 122.90214 * 359.76974 * 17 16 14 31 31 H 1.08002 * 124.80565 * 179.97438 * 19 18 17 32 32 H 1.08998 * 109.58753 * 65.92302 * 21 13 12 33 33 H 1.09001 * 109.59227 * 186.34950 * 21 13 12 34 34 H 1.08999 * 109.49487 * 298.57450 * 22 10 9 35 35 H 1.09007 * 109.49603 * 58.66964 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 6 1.1809 -4.7524 0.6083 12 6 1.9623 -6.0697 0.6369 13 7 2.4405 -6.3655 -0.7204 14 6 2.1720 -7.5524 -1.2998 15 8 2.6287 -7.8107 -2.3977 16 6 1.3293 -8.5328 -0.6068 17 6 0.3344 -9.2680 -1.1637 18 7 -0.2657 -10.0785 -0.3286 19 6 0.1494 -10.0840 0.8973 20 16 1.4329 -8.9725 1.0965 21 6 3.2224 -5.3451 -1.4320 22 6 2.4221 -4.0338 -1.4395 23 1 -0.4850 0.8401 -0.0004 24 1 0.3556 -2.3881 -0.0005 25 1 2.9690 -3.5507 0.5876 26 1 0.2813 -4.8762 0.0054 27 1 0.9023 -4.4726 1.6243 28 1 1.3104 -6.8740 0.9780 29 1 2.8130 -5.9778 1.3121 30 1 0.0613 -9.1916 -2.2058 31 1 -0.2580 -10.7025 1.6834 32 1 4.1739 -5.1928 -0.9225 33 1 3.4022 -5.6710 -2.4565 34 1 1.5108 -4.1642 -2.0232 35 1 3.0274 -3.2421 -1.8811 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000990068384.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:43 Heat of formation + Delta-G solvation = 8.148821 kcal Electronic energy + Delta-G solvation = -19598.072080 eV Core-core repulsion = 16529.563573 eV Total energy + Delta-G solvation = -3068.508506 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.51602 -40.37467 -38.72248 -36.21591 -33.92762 -32.63970 -31.51490 -30.79122 -27.36014 -26.41970 -24.62104 -24.29904 -22.65875 -21.28214 -20.50728 -19.61370 -18.99258 -17.84305 -17.47713 -16.70807 -16.46967 -15.98549 -15.52524 -15.42220 -15.27064 -15.11415 -14.98042 -14.47440 -14.37414 -13.88292 -13.54729 -13.13884 -12.80565 -12.73850 -12.58498 -12.27515 -12.22510 -11.98030 -11.69957 -11.60543 -11.28436 -10.89467 -10.74604 -10.43261 -9.98471 -9.79870 -9.00895 -7.92943 -5.21643 -0.70537 0.09344 0.54184 1.41319 1.49088 1.51249 1.57157 1.71956 2.02603 2.57456 3.23539 3.40283 3.47942 3.75762 3.78911 4.07455 4.10643 4.17064 4.30087 4.34399 4.35380 4.55548 4.66813 4.78712 4.80443 4.92264 4.98540 5.08100 5.23957 5.45791 5.52075 5.54620 6.17122 6.28857 6.56427 6.86718 7.35270 8.10749 8.33340 9.30361 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.033399 B = 0.003830 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.155695 B = 7309.442021 C = 7657.042263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.075 4.075 3 Si 0.970 3.030 4 H -0.280 1.280 5 H -0.299 1.299 6 H -0.276 1.276 7 C -0.238 4.238 8 H 0.079 0.921 9 N -0.737 5.737 10 C 0.173 3.827 11 C -0.128 4.128 12 C 0.106 3.894 13 N -0.597 5.597 14 C 0.593 3.407 15 O -0.569 6.569 16 C -0.317 4.317 17 C 0.101 3.899 18 N -0.503 5.503 19 C 0.030 3.970 20 S 0.242 5.758 21 C 0.123 3.877 22 C -0.139 4.139 23 H 0.250 0.750 24 H 0.371 0.629 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.179 0.821 31 H 0.245 0.755 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.039 0.961 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.852 -20.573 6.141 21.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.267 4.267 3 Si 0.799 3.201 4 H -0.206 1.206 5 H -0.225 1.225 6 H -0.201 1.201 7 C -0.370 4.370 8 H 0.097 0.903 9 N -0.376 5.376 10 C 0.065 3.935 11 C -0.167 4.167 12 C -0.018 4.018 13 N -0.328 5.328 14 C 0.380 3.620 15 O -0.450 6.450 16 C -0.441 4.441 17 C -0.056 4.056 18 N -0.216 5.216 19 C -0.264 4.264 20 S 0.497 5.503 21 C 0.000 4.000 22 C -0.180 4.180 23 H 0.058 0.942 24 H 0.203 0.797 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.105 0.895 28 H 0.116 0.884 29 H 0.121 0.879 30 H 0.196 0.804 31 H 0.261 0.739 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.058 0.942 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.411 -20.657 6.364 22.061 hybrid contribution -0.578 1.355 -1.362 2.006 sum 3.833 -19.302 5.003 20.305 Atomic orbital electron populations 1.69811 1.06649 1.26002 1.59717 1.25520 0.96266 1.00996 1.03935 0.85269 0.77202 0.79448 0.78200 1.20647 1.22550 1.20149 1.19599 0.91508 0.85127 1.40754 0.90347 1.42640 1.05415 1.00988 1.88581 1.20431 0.94764 0.84943 0.93398 1.22063 0.98400 0.94049 1.02223 1.22247 1.00076 0.97365 0.82077 1.48115 1.53015 1.14138 1.17568 1.17103 0.79253 0.81242 0.84368 1.90801 1.53700 1.78637 1.21866 1.25622 1.08215 1.09700 1.00554 1.22192 0.91528 0.90567 1.01308 1.66310 1.29930 1.22364 1.03038 1.29637 0.97868 1.01312 0.97574 1.83865 1.32729 1.31713 1.02039 1.21738 0.94092 0.86029 0.98113 1.22553 0.99401 0.95917 1.00124 0.94163 0.79738 0.92587 0.92999 0.89490 0.88399 0.87897 0.80423 0.73923 0.89030 0.90073 0.94198 0.91888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.66 13.06 21.65 0.28 -58.37 16 2 C -0.08 -4.21 5.50 84.86 0.47 -3.74 16 3 Si 0.97 45.22 29.55 68.60 2.03 47.24 16 4 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 7 C -0.24 -12.72 9.93 84.03 0.83 -11.89 16 8 H 0.08 3.98 7.83 -2.91 -0.02 3.95 16 9 N -0.74 -35.56 5.12 -322.81 -1.65 -37.22 16 10 C 0.17 6.24 2.73 45.02 0.12 6.36 16 11 C -0.13 -3.68 5.55 30.67 0.17 -3.51 16 12 C 0.11 2.28 5.91 86.36 0.51 2.79 16 13 N -0.60 -15.72 2.97 -822.77 -2.44 -18.16 16 14 C 0.59 17.03 7.57 86.45 0.65 17.69 16 15 O -0.57 -20.32 16.51 -4.30 -0.07 -20.39 16 16 C -0.32 -7.26 5.53 23.88 0.13 -7.13 16 17 C 0.10 2.34 11.30 84.23 0.95 3.29 16 18 N -0.50 -10.25 10.51 -202.57 -2.13 -12.38 16 19 C 0.03 0.38 12.22 130.60 1.60 1.98 16 20 S 0.24 3.29 20.03 -56.49 -1.13 2.15 16 21 C 0.12 3.44 6.45 86.51 0.56 4.00 16 22 C -0.14 -4.77 5.67 30.82 0.17 -4.60 16 23 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 24 H 0.37 19.54 7.80 -92.71 -0.72 18.82 16 25 H 0.06 1.97 8.08 -2.38 -0.02 1.95 16 26 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.10 1.77 3.96 -16.40 -0.06 1.70 16 29 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.18 4.04 8.06 -2.91 -0.02 4.02 16 31 H 0.24 0.89 8.06 -2.91 -0.02 0.86 16 32 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.08 2.43 7.02 -2.39 -0.02 2.42 16 34 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.06 2.32 8.14 -2.38 -0.02 2.31 16 Total: -1.00 -70.92 305.39 1.40 -69.52 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: 0.34 Total: 22.37 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: 6.17 Total: 5.23 kcal Atomic # 7 Polarization: -120.20 SS G_CDS: -5.94 Total: -126.14 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.07 Total: -20.39 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Atomic # 16 Polarization: 3.29 SS G_CDS: -1.13 Total: 2.15 kcal Total: -70.92 1.40 -69.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990068384.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.671 kcal (2) G-P(sol) polarization free energy of solvation -70.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds