Wall clock time and date at job start Wed Apr 15 2020 11:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 120.00039 * 2 1 4 4 H 1.48502 * 109.46921 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46759 * 299.99853 * 3 2 1 6 6 H 1.48497 * 109.46899 * 60.00041 * 3 2 1 7 7 C 1.38810 * 119.99931 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00371 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00060 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00111 * 179.97438 * 9 7 2 11 11 C 1.53035 * 109.46012 * 154.99705 * 10 9 7 12 12 C 1.53192 * 109.31367 * 181.38459 * 11 10 9 13 13 N 1.46922 * 108.77588 * 305.36706 * 12 11 10 14 14 C 1.34783 * 120.62836 * 233.58518 * 13 12 11 15 15 O 1.21631 * 120.00115 * 356.33276 * 14 13 12 16 16 C 1.47103 * 119.99837 * 176.33503 * 14 13 12 17 17 C 1.38389 * 127.99863 * 221.22881 * 16 14 13 18 18 C 1.37574 * 111.26119 * 179.88682 * 17 16 14 19 19 N 1.29556 * 117.95086 * 0.43458 * 18 17 16 20 20 S 1.56304 * 110.37980 * 359.75040 * 19 18 17 21 21 C 1.46924 * 118.74071 * 53.85702 * 13 12 11 22 22 C 1.53045 * 109.46015 * 275.06559 * 10 9 7 23 23 H 0.97008 * 119.99687 * 359.97438 * 1 2 3 24 24 H 0.97001 * 119.99611 * 359.97438 * 9 7 2 25 25 H 1.08998 * 109.44885 * 35.03242 * 10 9 7 26 26 H 1.08995 * 109.49952 * 61.43586 * 11 10 9 27 27 H 1.09005 * 109.52625 * 301.35305 * 11 10 9 28 28 H 1.09000 * 109.58726 * 185.57803 * 12 11 10 29 29 H 1.09005 * 109.70264 * 65.22511 * 12 11 10 30 30 H 1.08002 * 124.36323 * 0.02958 * 17 16 14 31 31 H 1.08004 * 121.02097 * 180.19058 * 18 17 16 32 32 H 1.09002 * 109.58588 * 65.92788 * 21 13 12 33 33 H 1.08999 * 109.58805 * 186.35466 * 21 13 12 34 34 H 1.08996 * 109.49218 * 298.56493 * 22 10 9 35 35 H 1.09004 * 109.49738 * 58.66097 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.1804 -4.7522 0.6104 12 6 1.9619 -6.0694 0.6405 13 7 2.4413 -6.3659 -0.7163 14 6 2.1733 -7.5532 -1.2951 15 8 1.5868 -8.4161 -0.6698 16 6 2.5901 -7.8056 -2.6831 17 6 1.8803 -8.4481 -3.6824 18 6 2.5981 -8.4915 -4.8553 19 7 3.7806 -7.9622 -4.8634 20 16 4.1190 -7.3642 -3.4595 21 6 3.2236 -5.3459 -1.4278 22 6 2.4233 -4.0347 -1.4368 23 1 -0.4850 0.8401 0.0004 24 1 0.3555 -2.3880 0.0005 25 1 2.9683 -3.5503 0.5905 26 1 0.2814 -4.8763 0.0068 27 1 0.9008 -4.4717 1.6260 28 1 1.3097 -6.8735 0.9814 29 1 2.8120 -5.9770 1.3164 30 1 0.8897 -8.8600 -3.5582 31 1 2.1900 -8.9561 -5.7407 32 1 4.1747 -5.1932 -0.9176 33 1 3.4042 -5.6724 -2.4519 34 1 1.5125 -4.1655 -2.0211 35 1 3.0288 -3.2432 -1.8784 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996641175.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:46 Heat of formation + Delta-G solvation = 26.866995 kcal Electronic energy + Delta-G solvation = -19607.656659 eV Core-core repulsion = 16539.959834 eV Total energy + Delta-G solvation = -3067.696825 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.26841 -39.17516 -37.39616 -34.59690 -32.44395 -31.70453 -30.69990 -29.32894 -26.48935 -24.79252 -23.24626 -22.98481 -21.60441 -20.15308 -19.25152 -18.45659 -17.14794 -16.93374 -16.33528 -15.43126 -15.07065 -14.83216 -14.52005 -13.97255 -13.84633 -13.62833 -13.50818 -13.37273 -13.08033 -12.46259 -12.07360 -11.76608 -11.46292 -11.08768 -10.95603 -10.92740 -10.83069 -10.56965 -10.25187 -10.15566 -9.90581 -9.82779 -9.73549 -9.03564 -8.82867 -8.66220 -7.03481 -5.82557 -3.12200 0.17636 0.99551 1.67029 2.05974 2.67998 3.01780 3.39278 3.44912 3.47304 4.25709 4.53040 4.75808 4.83144 4.93264 5.20882 5.23604 5.28329 5.41027 5.45957 5.52821 5.58623 5.64280 5.84856 5.88912 6.13698 6.25083 6.29214 6.30065 6.41939 6.51017 6.79790 6.95544 7.27401 7.64379 7.96617 8.35470 9.47053 10.03705 10.38239 11.39952 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.025290 B = 0.004149 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.876656 B = 6746.821338 C = 7359.543890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.724 5.724 10 C 0.179 3.821 11 C -0.140 4.140 12 C 0.118 3.882 13 N -0.595 5.595 14 C 0.595 3.405 15 O -0.531 6.531 16 C -0.260 4.260 17 C -0.121 4.121 18 C 0.062 3.938 19 N -0.533 5.533 20 S 0.433 5.567 21 C 0.096 3.904 22 C -0.149 4.149 23 H 0.255 0.745 24 H 0.384 0.616 25 H 0.050 0.950 26 H 0.064 0.936 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.173 0.827 31 H 0.182 0.818 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.596 -16.246 -5.625 18.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.364 5.364 10 C 0.068 3.932 11 C -0.179 4.179 12 C -0.004 4.004 13 N -0.328 5.328 14 C 0.380 3.620 15 O -0.409 6.409 16 C -0.394 4.394 17 C -0.156 4.156 18 C -0.131 4.131 19 N -0.362 5.362 20 S 0.588 5.412 21 C -0.028 4.028 22 C -0.190 4.190 23 H 0.065 0.935 24 H 0.218 0.782 25 H 0.068 0.932 26 H 0.083 0.917 27 H 0.098 0.902 28 H 0.109 0.891 29 H 0.090 0.910 30 H 0.190 0.810 31 H 0.199 0.801 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.426 -15.771 -5.701 18.768 hybrid contribution -1.656 0.281 -0.269 1.701 sum 6.770 -15.490 -5.970 17.928 Atomic orbital electron populations 1.69674 1.05156 1.25627 1.57494 1.24751 0.95486 0.97733 1.02831 0.86142 0.78802 0.84162 0.77220 1.20506 1.21872 1.21845 1.19279 0.91026 0.84040 1.42922 0.91038 1.42440 1.05835 0.99674 1.88444 1.20172 0.94573 0.86157 0.92288 1.22226 0.99227 0.93907 1.02514 1.21710 0.99064 0.98352 0.81251 1.48045 1.53370 1.14189 1.17168 1.16801 0.79209 0.82336 0.83616 1.90810 1.42246 1.44392 1.63422 1.26853 1.03694 1.08894 0.99909 1.22047 1.02725 0.99922 0.90916 1.22232 0.89588 1.01132 1.00110 1.72152 1.21081 1.19092 1.23853 1.81892 1.15794 1.46860 0.96669 1.22319 0.95047 0.89187 0.96238 1.22762 0.99991 0.94231 1.02032 0.93504 0.78221 0.93174 0.91701 0.90180 0.89056 0.90967 0.81013 0.80145 0.90363 0.91058 0.92039 0.90311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.48 13.06 55.49 0.72 -26.75 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 21.73 29.55 -169.99 -5.02 16.71 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.24 -6.39 9.93 -15.06 -0.15 -6.54 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.72 -17.19 5.12 -53.39 -0.27 -17.46 16 10 C 0.18 3.23 2.73 -67.89 -0.19 3.05 16 11 C -0.14 -2.17 5.55 -26.61 -0.15 -2.32 16 12 C 0.12 1.58 6.42 -3.71 -0.02 1.55 16 13 N -0.60 -8.04 2.97 -173.89 -0.52 -8.56 16 14 C 0.59 8.52 7.65 -12.66 -0.10 8.42 16 15 O -0.53 -9.03 16.53 5.25 0.09 -8.95 16 16 C -0.26 -3.15 5.85 -35.93 -0.21 -3.36 16 17 C -0.12 -1.25 10.56 -39.77 -0.42 -1.67 16 18 C 0.06 0.59 11.14 -18.75 -0.21 0.38 16 19 N -0.53 -6.07 11.29 21.63 0.24 -5.82 16 20 S 0.43 4.55 20.31 -107.50 -2.18 2.37 16 21 C 0.10 1.21 6.03 -3.49 -0.02 1.19 16 22 C -0.15 -2.39 5.67 -26.39 -0.15 -2.54 16 23 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 24 H 0.38 9.85 7.80 -40.82 -0.32 9.54 16 25 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 26 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.09 1.24 7.02 -51.93 -0.36 0.88 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.17 1.49 8.06 -52.49 -0.42 1.07 16 31 H 0.18 1.15 8.06 -52.48 -0.42 0.73 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.82 3.85 -29.27 -0.11 0.70 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 305.04 15.07 4.60 4.60 Total: -1.00 -31.67 305.04 -8.20 -39.87 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -4.14 Total: 6.25 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: -1.71 Total: -2.26 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: 0.18 Total: -58.59 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.09 Total: -8.95 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 4.55 SS G_CDS: -2.18 Total: 2.37 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.67 -8.20 -39.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996641175.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.738 kcal (2) G-P(sol) polarization free energy of solvation -31.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds