Wall clock time and date at job start Wed Apr 15 2020 11:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 120.00039 * 2 1 4 4 H 1.48502 * 109.46921 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46759 * 299.99853 * 3 2 1 6 6 H 1.48497 * 109.46899 * 60.00041 * 3 2 1 7 7 C 1.38810 * 119.99931 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00371 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00060 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00111 * 179.97438 * 9 7 2 11 11 C 1.53035 * 109.46012 * 154.99705 * 10 9 7 12 12 C 1.53192 * 109.31367 * 181.38459 * 11 10 9 13 13 N 1.46922 * 108.77588 * 305.36706 * 12 11 10 14 14 C 1.34783 * 120.62836 * 233.58518 * 13 12 11 15 15 O 1.21631 * 120.00115 * 356.33276 * 14 13 12 16 16 C 1.47103 * 119.99837 * 176.33503 * 14 13 12 17 17 C 1.38389 * 127.99863 * 221.22881 * 16 14 13 18 18 C 1.37574 * 111.26119 * 179.88682 * 17 16 14 19 19 N 1.29556 * 117.95086 * 0.43458 * 18 17 16 20 20 S 1.56304 * 110.37980 * 359.75040 * 19 18 17 21 21 C 1.46924 * 118.74071 * 53.85702 * 13 12 11 22 22 C 1.53045 * 109.46015 * 275.06559 * 10 9 7 23 23 H 0.97008 * 119.99687 * 359.97438 * 1 2 3 24 24 H 0.97001 * 119.99611 * 359.97438 * 9 7 2 25 25 H 1.08998 * 109.44885 * 35.03242 * 10 9 7 26 26 H 1.08995 * 109.49952 * 61.43586 * 11 10 9 27 27 H 1.09005 * 109.52625 * 301.35305 * 11 10 9 28 28 H 1.09000 * 109.58726 * 185.57803 * 12 11 10 29 29 H 1.09005 * 109.70264 * 65.22511 * 12 11 10 30 30 H 1.08002 * 124.36323 * 0.02958 * 17 16 14 31 31 H 1.08004 * 121.02097 * 180.19058 * 18 17 16 32 32 H 1.09002 * 109.58588 * 65.92788 * 21 13 12 33 33 H 1.08999 * 109.58805 * 186.35466 * 21 13 12 34 34 H 1.08996 * 109.49218 * 298.56493 * 22 10 9 35 35 H 1.09004 * 109.49738 * 58.66097 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.1804 -4.7522 0.6104 12 6 1.9619 -6.0694 0.6405 13 7 2.4413 -6.3659 -0.7163 14 6 2.1733 -7.5532 -1.2951 15 8 1.5868 -8.4161 -0.6698 16 6 2.5901 -7.8056 -2.6831 17 6 1.8803 -8.4481 -3.6824 18 6 2.5981 -8.4915 -4.8553 19 7 3.7806 -7.9622 -4.8634 20 16 4.1190 -7.3642 -3.4595 21 6 3.2236 -5.3459 -1.4278 22 6 2.4233 -4.0347 -1.4368 23 1 -0.4850 0.8401 0.0004 24 1 0.3555 -2.3880 0.0005 25 1 2.9683 -3.5503 0.5905 26 1 0.2814 -4.8763 0.0068 27 1 0.9008 -4.4717 1.6260 28 1 1.3097 -6.8735 0.9814 29 1 2.8120 -5.9770 1.3164 30 1 0.8897 -8.8600 -3.5582 31 1 2.1900 -8.9561 -5.7407 32 1 4.1747 -5.1932 -0.9176 33 1 3.4042 -5.6724 -2.4519 34 1 1.5125 -4.1655 -2.0211 35 1 3.0288 -3.2432 -1.8784 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996641175.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:45 Heat of formation + Delta-G solvation = 5.570048 kcal Electronic energy + Delta-G solvation = -19608.580164 eV Core-core repulsion = 16539.959834 eV Total energy + Delta-G solvation = -3068.620330 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.35876 -40.05004 -38.69475 -36.19510 -33.97204 -32.92478 -31.79707 -30.99503 -27.55389 -26.26513 -24.56087 -24.33631 -22.72856 -21.38517 -20.26041 -19.54219 -19.01930 -17.86801 -17.44176 -16.69573 -16.47943 -15.94825 -15.58149 -15.42421 -15.27100 -14.99386 -14.83176 -14.45198 -14.14826 -13.83596 -13.34218 -13.22567 -12.87010 -12.69284 -12.36666 -12.26437 -12.10066 -12.02691 -11.76484 -11.63442 -11.32236 -11.26496 -10.90647 -10.74512 -9.80814 -9.68630 -8.98903 -7.91906 -5.20494 -0.69058 0.14611 0.86637 1.24914 1.50046 1.50471 1.60077 1.64235 1.98263 2.58346 3.27931 3.42054 3.77427 3.83836 3.98866 4.02373 4.08910 4.12415 4.33438 4.37392 4.57986 4.66413 4.71814 4.82116 4.82356 4.88256 4.98901 5.06392 5.27050 5.45507 5.50619 5.55355 5.58135 6.18363 6.30104 6.87507 7.36382 8.11988 8.34366 9.32004 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.025290 B = 0.004149 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.876656 B = 6746.821338 C = 7359.543890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.077 4.077 3 Si 0.968 3.032 4 H -0.262 1.262 5 H -0.298 1.298 6 H -0.297 1.297 7 C -0.233 4.233 8 H 0.082 0.918 9 N -0.738 5.738 10 C 0.172 3.828 11 C -0.129 4.129 12 C 0.124 3.876 13 N -0.596 5.596 14 C 0.596 3.404 15 O -0.564 6.564 16 C -0.289 4.289 17 C -0.114 4.114 18 C 0.067 3.933 19 N -0.553 5.553 20 S 0.454 5.546 21 C 0.105 3.895 22 C -0.139 4.139 23 H 0.249 0.751 24 H 0.370 0.630 25 H 0.057 0.943 26 H 0.050 0.950 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.186 0.814 31 H 0.214 0.786 32 H 0.104 0.896 33 H 0.086 0.914 34 H 0.044 0.956 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.347 -17.277 -6.371 20.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.269 4.269 3 Si 0.798 3.202 4 H -0.186 1.186 5 H -0.225 1.225 6 H -0.225 1.225 7 C -0.365 4.365 8 H 0.100 0.900 9 N -0.377 5.377 10 C 0.064 3.936 11 C -0.168 4.168 12 C 0.002 3.998 13 N -0.328 5.328 14 C 0.383 3.617 15 O -0.444 6.444 16 C -0.423 4.423 17 C -0.150 4.150 18 C -0.125 4.125 19 N -0.382 5.382 20 S 0.610 5.390 21 C -0.019 4.019 22 C -0.180 4.180 23 H 0.058 0.942 24 H 0.202 0.798 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.097 0.903 28 H 0.108 0.892 29 H 0.113 0.887 30 H 0.203 0.797 31 H 0.231 0.769 32 H 0.122 0.878 33 H 0.104 0.896 34 H 0.063 0.937 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.245 -16.831 -6.452 20.733 hybrid contribution -2.189 0.498 -0.084 2.247 sum 8.056 -16.333 -6.535 19.349 Atomic orbital electron populations 1.69831 1.06723 1.25794 1.60008 1.25522 0.96238 1.01017 1.04121 0.85138 0.78531 0.80159 0.76356 1.18606 1.22518 1.22468 1.19694 0.91603 0.84988 1.40211 0.90029 1.42679 1.05431 1.01063 1.88549 1.20439 0.94635 0.84703 0.93822 1.22078 0.98522 0.94317 1.01860 1.21665 0.99641 0.96665 0.81819 1.48095 1.53241 1.14243 1.17191 1.17040 0.78440 0.81980 0.84231 1.90788 1.43779 1.45375 1.64448 1.26790 1.05326 1.10822 0.99333 1.22357 1.03251 0.98740 0.90661 1.22651 0.88782 1.00172 1.00860 1.72177 1.21973 1.19845 1.24213 1.81702 1.14607 1.46635 0.96061 1.22321 0.95046 0.86924 0.97626 1.22530 0.99661 0.96013 0.99806 0.94242 0.79835 0.92540 0.93131 0.90305 0.89164 0.88677 0.79663 0.76945 0.87818 0.89612 0.93742 0.91142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.61 13.06 21.65 0.28 -58.33 16 2 C -0.08 -4.29 5.50 84.86 0.47 -3.82 16 3 Si 0.97 44.81 29.55 68.60 2.03 46.84 16 4 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 5 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 7 C -0.23 -12.26 9.93 84.03 0.83 -11.42 16 8 H 0.08 4.05 7.83 -2.91 -0.02 4.02 16 9 N -0.74 -35.24 5.12 -322.82 -1.65 -36.89 16 10 C 0.17 6.10 2.73 45.02 0.12 6.23 16 11 C -0.13 -3.93 5.55 30.67 0.17 -3.76 16 12 C 0.12 3.12 6.42 86.36 0.55 3.67 16 13 N -0.60 -15.09 2.97 -822.32 -2.44 -17.52 16 14 C 0.60 16.27 7.65 86.57 0.66 16.93 16 15 O -0.56 -18.72 16.53 -4.13 -0.07 -18.79 16 16 C -0.29 -6.50 5.85 24.63 0.14 -6.36 16 17 C -0.11 -2.12 10.56 22.15 0.23 -1.89 16 18 C 0.07 1.10 11.14 84.87 0.95 2.05 16 19 N -0.55 -11.22 11.29 -85.49 -0.97 -12.18 16 20 S 0.45 8.54 20.31 -56.49 -1.15 7.39 16 21 C 0.10 2.40 6.03 86.51 0.52 2.92 16 22 C -0.14 -4.31 5.67 30.82 0.17 -4.14 16 23 H 0.25 14.62 8.31 -92.70 -0.77 13.85 16 24 H 0.37 19.48 7.80 -92.71 -0.72 18.76 16 25 H 0.06 1.95 8.08 -2.39 -0.02 1.93 16 26 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 28 H 0.09 2.35 7.02 -2.39 -0.02 2.33 16 29 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 30 H 0.19 2.82 8.06 -2.91 -0.02 2.80 16 31 H 0.21 1.93 8.06 -2.91 -0.02 1.91 16 32 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.09 1.77 3.85 -16.79 -0.06 1.70 16 34 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -68.18 305.04 1.21 -66.97 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: 0.34 Total: 22.10 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: 4.83 Total: 0.41 kcal Atomic # 7 Polarization: -120.15 SS G_CDS: -4.77 Total: -124.93 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.07 Total: -18.79 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Atomic # 16 Polarization: 8.54 SS G_CDS: -1.15 Total: 7.39 kcal Total: -68.18 1.21 -66.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996641175.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.540 kcal (2) G-P(sol) polarization free energy of solvation -68.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds