Wall clock time and date at job start Wed Apr 15 2020 11:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 120.00122 * 2 1 4 4 H 1.48505 * 109.47152 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47268 * 299.99785 * 3 2 1 6 6 H 1.48494 * 109.47262 * 60.00007 * 3 2 1 7 7 C 1.38810 * 120.00050 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00248 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99937 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00206 * 180.02562 * 9 7 2 11 11 C 1.53042 * 109.46183 * 205.00123 * 10 9 7 12 12 C 1.53191 * 109.31412 * 178.62680 * 11 10 9 13 13 N 1.46931 * 108.77455 * 54.63235 * 12 11 10 14 14 C 1.34781 * 120.62634 * 126.37079 * 13 12 11 15 15 O 1.21570 * 120.00360 * 0.79070 * 14 13 12 16 16 C 1.47689 * 119.99738 * 180.79619 * 14 13 12 17 17 C 1.39485 * 122.10690 * 171.54150 * 16 14 13 18 18 C 1.34994 * 111.68726 * 180.19013 * 17 16 14 19 19 S 1.71768 * 105.45078 * 359.56429 * 18 17 16 20 20 N 1.30610 * 122.10491 * 351.22216 * 16 14 13 21 21 C 1.46922 * 118.73872 * 306.64571 * 13 12 11 22 22 C 1.52763 * 109.01265 * 53.30965 * 21 13 12 23 23 H 0.97002 * 119.99543 * 0.02562 * 1 2 3 24 24 H 0.97000 * 119.99701 * 0.02562 * 9 7 2 25 25 H 1.09002 * 109.45974 * 324.97723 * 10 9 7 26 26 H 1.08999 * 109.49287 * 58.67760 * 11 10 9 27 27 H 1.09000 * 109.51921 * 298.59393 * 11 10 9 28 28 H 1.08997 * 109.58640 * 294.84779 * 12 11 10 29 29 H 1.08998 * 109.70603 * 174.49430 * 12 11 10 30 30 H 1.08005 * 124.15381 * 0.05286 * 17 16 14 31 31 H 1.08001 * 127.27793 * 179.83218 * 18 17 16 32 32 H 1.09001 * 109.58628 * 173.14328 * 21 13 12 33 33 H 1.08996 * 109.58512 * 293.56521 * 21 13 12 34 34 H 1.08991 * 109.56353 * 185.55380 * 22 21 13 35 35 H 1.09004 * 109.35662 * 65.49500 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.1803 -4.7522 -0.6104 12 6 1.9616 -6.0695 -0.6402 13 7 2.4409 -6.3659 0.7168 14 6 2.1720 -7.5527 1.2961 15 8 1.5395 -8.3956 0.6899 16 6 2.6455 -7.8292 2.6674 17 6 2.2497 -8.9652 3.3735 18 6 2.8031 -9.0056 4.6041 19 16 3.7760 -7.5944 4.7150 20 7 3.4661 -7.0286 3.2930 21 6 3.2137 -5.3415 1.4324 22 6 2.4230 -4.0344 1.4369 23 1 -0.4849 0.8401 -0.0004 24 1 0.3555 -2.3880 -0.0005 25 1 2.9684 -3.5505 -0.5904 26 1 0.9015 -4.4716 -1.6261 27 1 0.2809 -4.8762 -0.0072 28 1 2.8120 -5.9748 -1.3154 29 1 1.3115 -6.8748 -0.9821 30 1 1.5808 -9.7186 2.9842 31 1 2.6667 -9.7669 5.3580 32 1 3.3873 -5.6654 2.4586 33 1 4.1682 -5.1862 0.9297 34 1 3.0286 -3.2430 1.8784 35 1 1.5121 -4.1651 2.0213 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996702214.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:49 Heat of formation + Delta-G solvation = 38.843559 kcal Electronic energy + Delta-G solvation = -19714.740755 eV Core-core repulsion = 16647.563273 eV Total energy + Delta-G solvation = -3067.177482 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.80110 -38.67544 -37.25657 -34.51900 -32.37542 -31.65562 -30.61816 -29.28194 -26.84461 -24.64067 -22.98068 -22.77206 -21.38189 -20.15161 -19.08104 -18.80295 -17.22807 -16.95504 -15.92099 -15.69477 -14.87879 -14.58411 -14.28391 -13.87063 -13.68580 -13.56628 -13.41924 -13.37355 -13.08497 -12.41001 -12.06275 -11.73328 -11.42427 -11.07604 -10.90921 -10.79320 -10.64291 -10.34362 -10.18741 -10.11894 -9.81297 -9.70820 -9.44132 -9.07343 -8.83143 -8.45404 -6.95191 -5.76725 -3.05532 0.33518 1.20981 1.57411 1.61283 3.04956 3.21676 3.42752 3.48364 3.50627 4.38481 4.58535 4.58662 5.03920 5.24536 5.32421 5.35288 5.43546 5.54353 5.54653 5.62416 5.75244 5.90218 5.98118 6.06639 6.20740 6.33519 6.44304 6.52264 6.55203 6.69148 6.95088 7.09321 7.49349 7.70126 8.12431 8.41709 9.52906 10.10886 10.45805 11.46055 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.025813 B = 0.004089 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.468908 B = 6846.209470 C = 7583.776463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.071 0.929 9 N -0.725 5.725 10 C 0.177 3.823 11 C -0.138 4.138 12 C 0.115 3.885 13 N -0.582 5.582 14 C 0.585 3.415 15 O -0.541 6.541 16 C 0.059 3.941 17 C -0.134 4.134 18 C -0.276 4.276 19 S 0.436 5.564 20 N -0.502 5.502 21 C 0.069 3.931 22 C -0.147 4.147 23 H 0.254 0.746 24 H 0.383 0.617 25 H 0.048 0.952 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.172 0.828 31 H 0.185 0.815 32 H 0.144 0.856 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.582 -18.644 9.271 22.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.089 0.911 9 N -0.365 5.365 10 C 0.067 3.933 11 C -0.177 4.177 12 C -0.008 4.008 13 N -0.313 5.313 14 C 0.368 3.632 15 O -0.419 6.419 16 C -0.115 4.115 17 C -0.167 4.167 18 C -0.425 4.425 19 S 0.595 5.405 20 N -0.336 5.336 21 C -0.057 4.057 22 C -0.189 4.189 23 H 0.064 0.936 24 H 0.217 0.783 25 H 0.066 0.934 26 H 0.096 0.904 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.108 0.892 30 H 0.189 0.811 31 H 0.203 0.797 32 H 0.160 0.840 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.713 -17.450 9.681 21.775 hybrid contribution -1.130 -0.111 -0.797 1.387 sum 7.583 -17.561 8.883 21.091 Atomic orbital electron populations 1.69675 1.05129 1.25510 1.57812 1.24741 0.95492 0.97674 1.03073 0.86138 0.78791 0.84218 0.77177 1.20552 1.21890 1.21907 1.19292 0.91013 0.84105 1.42490 0.91121 1.42447 1.05795 0.99743 1.88523 1.20212 0.94361 0.86005 0.92729 1.22201 0.99184 0.94035 1.02296 1.21718 0.98928 0.98243 0.81895 1.48035 1.52558 1.14263 1.16490 1.17308 0.79815 0.82441 0.83592 1.90771 1.41381 1.46133 1.63570 1.21258 0.99017 0.93399 0.97851 1.21385 1.03064 0.98866 0.93388 1.27153 1.05937 1.07403 1.02036 1.80852 1.38065 1.08277 1.13308 1.72726 1.21624 1.29089 1.10125 1.23086 0.93628 0.88118 1.00850 1.22560 0.99970 0.95079 1.01245 0.93580 0.78308 0.93443 0.90406 0.91828 0.91252 0.89220 0.81097 0.79719 0.84015 0.91937 0.90751 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.28 13.06 55.49 0.72 -27.56 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 7 C -0.24 -6.57 9.93 -15.06 -0.15 -6.72 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.72 -18.22 5.12 -53.38 -0.27 -18.49 16 10 C 0.18 3.53 2.73 -67.89 -0.19 3.35 16 11 C -0.14 -2.38 5.55 -26.61 -0.15 -2.52 16 12 C 0.11 1.74 6.43 -3.71 -0.02 1.71 16 13 N -0.58 -9.08 2.98 -174.20 -0.52 -9.60 16 14 C 0.59 9.24 7.68 -12.40 -0.10 9.14 16 15 O -0.54 -9.57 16.10 5.30 0.09 -9.49 16 16 C 0.06 0.77 6.53 -84.06 -0.55 0.22 16 17 C -0.13 -1.41 9.98 -40.27 -0.40 -1.81 16 18 C -0.28 -2.10 11.41 29.58 0.34 -1.76 16 19 S 0.44 3.60 23.20 -107.50 -2.49 1.10 16 20 N -0.50 -6.11 7.22 24.85 0.18 -5.93 16 21 C 0.07 1.05 6.15 -3.93 -0.02 1.03 16 22 C -0.15 -2.67 5.64 -26.83 -0.15 -2.82 16 23 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 24 H 0.38 10.32 7.80 -40.82 -0.32 10.01 16 25 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 26 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 27 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.09 1.35 7.01 -51.93 -0.36 0.99 16 30 H 0.17 1.66 8.00 -52.48 -0.42 1.24 16 31 H 0.19 0.79 8.06 -52.49 -0.42 0.37 16 32 H 0.14 2.07 3.63 -93.10 -0.34 1.74 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 303.66 15.07 4.58 4.58 Total: -1.00 -32.34 303.66 -8.60 -40.94 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -4.36 Total: 7.80 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -1.49 Total: -0.68 kcal Atomic # 7 Polarization: -61.69 SS G_CDS: 0.11 Total: -61.58 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Atomic # 16 Polarization: 3.60 SS G_CDS: -2.49 Total: 1.10 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.34 -8.60 -40.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996702214.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.779 kcal (2) G-P(sol) polarization free energy of solvation -32.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds