Wall clock time and date at job start Wed Apr 15 2020 11:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 120.00122 * 2 1 4 4 H 1.48505 * 109.47152 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47268 * 299.99785 * 3 2 1 6 6 H 1.48494 * 109.47262 * 60.00007 * 3 2 1 7 7 C 1.38810 * 120.00050 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00248 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99937 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00206 * 180.02562 * 9 7 2 11 11 C 1.53042 * 109.46183 * 205.00123 * 10 9 7 12 12 C 1.53191 * 109.31412 * 178.62680 * 11 10 9 13 13 N 1.46931 * 108.77455 * 54.63235 * 12 11 10 14 14 C 1.34781 * 120.62634 * 126.37079 * 13 12 11 15 15 O 1.21570 * 120.00360 * 0.79070 * 14 13 12 16 16 C 1.47689 * 119.99738 * 180.79619 * 14 13 12 17 17 C 1.39485 * 122.10690 * 171.54150 * 16 14 13 18 18 C 1.34994 * 111.68726 * 180.19013 * 17 16 14 19 19 S 1.71768 * 105.45078 * 359.56429 * 18 17 16 20 20 N 1.30610 * 122.10491 * 351.22216 * 16 14 13 21 21 C 1.46922 * 118.73872 * 306.64571 * 13 12 11 22 22 C 1.52763 * 109.01265 * 53.30965 * 21 13 12 23 23 H 0.97002 * 119.99543 * 0.02562 * 1 2 3 24 24 H 0.97000 * 119.99701 * 0.02562 * 9 7 2 25 25 H 1.09002 * 109.45974 * 324.97723 * 10 9 7 26 26 H 1.08999 * 109.49287 * 58.67760 * 11 10 9 27 27 H 1.09000 * 109.51921 * 298.59393 * 11 10 9 28 28 H 1.08997 * 109.58640 * 294.84779 * 12 11 10 29 29 H 1.08998 * 109.70603 * 174.49430 * 12 11 10 30 30 H 1.08005 * 124.15381 * 0.05286 * 17 16 14 31 31 H 1.08001 * 127.27793 * 179.83218 * 18 17 16 32 32 H 1.09001 * 109.58628 * 173.14328 * 21 13 12 33 33 H 1.08996 * 109.58512 * 293.56521 * 21 13 12 34 34 H 1.08991 * 109.56353 * 185.55380 * 22 21 13 35 35 H 1.09004 * 109.35662 * 65.49500 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.1803 -4.7522 -0.6104 12 6 1.9616 -6.0695 -0.6402 13 7 2.4409 -6.3659 0.7168 14 6 2.1720 -7.5527 1.2961 15 8 1.5395 -8.3956 0.6899 16 6 2.6455 -7.8292 2.6674 17 6 2.2497 -8.9652 3.3735 18 6 2.8031 -9.0056 4.6041 19 16 3.7760 -7.5944 4.7150 20 7 3.4661 -7.0286 3.2930 21 6 3.2137 -5.3415 1.4324 22 6 2.4230 -4.0344 1.4369 23 1 -0.4849 0.8401 -0.0004 24 1 0.3555 -2.3880 -0.0005 25 1 2.9684 -3.5505 -0.5904 26 1 0.9015 -4.4716 -1.6261 27 1 0.2809 -4.8762 -0.0072 28 1 2.8120 -5.9748 -1.3154 29 1 1.3115 -6.8748 -0.9821 30 1 1.5808 -9.7186 2.9842 31 1 2.6667 -9.7669 5.3580 32 1 3.3873 -5.6654 2.4586 33 1 4.1682 -5.1862 0.9297 34 1 3.0286 -3.2430 1.8784 35 1 1.5121 -4.1651 2.0213 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996702214.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:47 Heat of formation + Delta-G solvation = 16.993751 kcal Electronic energy + Delta-G solvation = -19715.688234 eV Core-core repulsion = 16647.563273 eV Total energy + Delta-G solvation = -3068.124961 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.85420 -39.75635 -38.62674 -36.21781 -33.95754 -32.82802 -31.85901 -31.06122 -27.96594 -26.28597 -24.39567 -24.24400 -22.50796 -21.40112 -20.33449 -19.61725 -19.11364 -18.17013 -17.16131 -16.78699 -16.69827 -15.68667 -15.51942 -15.37825 -15.27899 -14.90520 -14.63389 -14.52775 -14.20372 -13.81958 -13.47825 -13.29245 -12.87694 -12.78438 -12.33717 -12.18594 -12.13887 -12.08907 -11.81672 -11.52015 -11.34873 -11.05480 -10.88907 -10.40025 -9.93156 -9.61637 -9.00475 -7.94267 -5.23345 -0.47079 0.52854 0.73511 0.79420 1.47560 1.48142 1.58243 1.92069 2.12097 2.56135 3.38322 3.40840 3.77058 3.78849 3.92354 4.13033 4.19979 4.37190 4.39212 4.42130 4.55822 4.59952 4.78173 4.84707 4.86177 4.97625 5.00364 5.16710 5.24844 5.32033 5.46536 5.52293 5.64225 6.27140 6.29396 6.94075 7.33306 8.08075 8.32232 9.29689 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.025813 B = 0.004089 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.468908 B = 6846.209470 C = 7583.776463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.077 4.077 3 Si 0.972 3.028 4 H -0.264 1.264 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.237 4.237 8 H 0.078 0.922 9 N -0.738 5.738 10 C 0.172 3.828 11 C -0.127 4.127 12 C 0.120 3.880 13 N -0.588 5.588 14 C 0.580 3.420 15 O -0.569 6.569 16 C 0.032 3.968 17 C -0.154 4.154 18 C -0.254 4.254 19 S 0.510 5.490 20 N -0.541 5.541 21 C 0.077 3.923 22 C -0.135 4.135 23 H 0.250 0.750 24 H 0.370 0.630 25 H 0.049 0.951 26 H 0.078 0.922 27 H 0.049 0.951 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.173 0.827 31 H 0.225 0.775 32 H 0.159 0.841 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.509 -19.909 10.962 24.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.269 4.269 3 Si 0.801 3.199 4 H -0.188 1.188 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.368 4.368 8 H 0.096 0.904 9 N -0.377 5.377 10 C 0.064 3.936 11 C -0.165 4.165 12 C -0.003 4.003 13 N -0.319 5.319 14 C 0.365 3.635 15 O -0.449 6.449 16 C -0.140 4.140 17 C -0.186 4.186 18 C -0.403 4.403 19 S 0.669 5.331 20 N -0.377 5.377 21 C -0.048 4.048 22 C -0.176 4.176 23 H 0.059 0.941 24 H 0.202 0.798 25 H 0.067 0.933 26 H 0.096 0.904 27 H 0.068 0.932 28 H 0.105 0.895 29 H 0.109 0.891 30 H 0.190 0.810 31 H 0.242 0.758 32 H 0.174 0.826 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 10.679 -18.756 11.366 24.393 hybrid contribution -1.661 0.166 -1.176 2.042 sum 9.018 -18.589 10.190 23.038 Atomic orbital electron populations 1.69836 1.06723 1.25896 1.59854 1.25556 0.96322 1.01084 1.03925 0.85088 0.78348 0.79878 0.76551 1.18827 1.22201 1.22181 1.19675 0.91477 0.85093 1.40580 0.90424 1.42663 1.05370 1.01024 1.88670 1.20442 0.94304 0.84818 0.94063 1.22049 0.98430 0.94350 1.01719 1.21657 0.99338 0.96739 0.82544 1.48098 1.52697 1.14539 1.16536 1.17743 0.79143 0.81907 0.84666 1.90738 1.42618 1.46849 1.64668 1.21042 1.00827 0.95016 0.97090 1.21444 1.04160 0.98498 0.94506 1.27594 1.03707 1.07583 1.01408 1.80552 1.35846 1.07186 1.09548 1.72113 1.22198 1.30763 1.12618 1.23075 0.93088 0.86282 1.02391 1.22339 0.99440 0.96572 0.99217 0.94126 0.79831 0.93346 0.90359 0.93173 0.89500 0.89082 0.80996 0.75843 0.82589 0.90956 0.91885 0.94312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.25 13.06 21.65 0.28 -59.96 16 2 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 3 Si 0.97 46.26 29.55 68.60 2.03 48.28 16 4 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 5 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 6 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 7 C -0.24 -13.15 9.93 84.03 0.83 -12.32 16 8 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 9 N -0.74 -37.85 5.12 -322.81 -1.65 -39.50 16 10 C 0.17 6.92 2.73 45.02 0.12 7.04 16 11 C -0.13 -4.41 5.55 30.67 0.17 -4.24 16 12 C 0.12 3.59 6.43 86.36 0.56 4.15 16 13 N -0.59 -18.12 2.98 -823.32 -2.45 -20.58 16 14 C 0.58 18.21 7.68 86.74 0.67 18.87 16 15 O -0.57 -20.28 16.10 -3.94 -0.06 -20.35 16 16 C 0.03 0.80 6.53 42.12 0.28 1.08 16 17 C -0.15 -2.94 9.98 21.82 0.22 -2.72 16 18 C -0.25 -2.88 11.41 67.07 0.77 -2.12 16 19 S 0.51 6.67 23.20 -56.49 -1.31 5.36 16 20 N -0.54 -12.13 7.22 -75.29 -0.54 -12.67 16 21 C 0.08 2.29 6.15 86.22 0.53 2.82 16 22 C -0.13 -4.91 5.64 30.53 0.17 -4.74 16 23 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 24 H 0.37 20.63 7.80 -92.71 -0.72 19.91 16 25 H 0.05 1.94 8.08 -2.39 -0.02 1.92 16 26 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 27 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.09 2.74 7.01 -2.39 -0.02 2.72 16 30 H 0.17 3.15 8.00 -2.91 -0.02 3.13 16 31 H 0.22 0.70 8.06 -2.91 -0.02 0.67 16 32 H 0.16 4.39 3.63 -83.69 -0.30 4.08 16 33 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -70.94 303.66 1.17 -69.77 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: 0.10 Total: 25.79 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: 4.78 Total: 3.85 kcal Atomic # 7 Polarization: -128.34 SS G_CDS: -4.37 Total: -132.71 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.06 Total: -20.35 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.28 kcal Atomic # 16 Polarization: 6.67 SS G_CDS: -1.31 Total: 5.36 kcal Total: -70.94 1.17 -69.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996702214.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.767 kcal (2) G-P(sol) polarization free energy of solvation -70.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds