Wall clock time and date at job start Wed Apr 15 2020 11:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86811 * 119.99790 * 2 1 4 4 H 1.48505 * 109.46631 * 239.99495 * 3 2 1 5 5 H 1.48491 * 109.46930 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46881 * 119.99927 * 3 2 1 7 7 C 1.38805 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00160 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00062 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00091 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.49942 * 325.05906 * 10 9 7 12 12 C 1.53038 * 109.49608 * 204.99729 * 10 9 7 13 13 C 1.53044 * 109.53930 * 178.64967 * 12 10 9 14 14 C 1.53196 * 109.33865 * 61.34589 * 13 12 10 15 15 N 1.46936 * 108.77165 * 305.42090 * 14 13 12 16 16 C 1.34775 * 120.59911 * 233.53048 * 15 14 13 17 17 O 1.21694 * 120.00020 * 173.54986 * 16 15 14 18 18 C 1.46688 * 120.00456 * 353.55808 * 16 15 14 19 19 C 1.35651 * 126.13531 * 151.33249 * 18 16 15 20 20 N 1.30941 * 114.19767 * 179.97438 * 19 18 16 21 21 C 1.29433 * 117.35747 * 0.02562 * 20 19 18 22 22 S 1.70952 * 110.39147 * 359.71937 * 21 20 19 23 23 C 1.46920 * 118.76660 * 53.55240 * 15 14 13 24 24 H 0.97006 * 120.00393 * 0.02562 * 1 2 3 25 25 H 0.97000 * 120.00253 * 359.97438 * 9 7 2 26 26 H 1.09003 * 109.46194 * 58.63017 * 12 10 9 27 27 H 1.09006 * 109.46453 * 298.66976 * 12 10 9 28 28 H 1.09003 * 109.50130 * 181.31504 * 13 12 10 29 29 H 1.09001 * 109.49966 * 301.38183 * 13 12 10 30 30 H 1.09000 * 109.58407 * 65.16991 * 14 13 12 31 31 H 1.08996 * 109.58855 * 185.59555 * 14 13 12 32 32 H 1.08004 * 122.90765 * 359.97438 * 19 18 16 33 33 H 1.08001 * 124.80278 * 180.02562 * 21 20 19 34 34 H 1.09004 * 109.58555 * 186.62607 * 23 15 14 35 35 H 1.08995 * 109.58599 * 66.20487 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 1 2.9695 -3.5506 -0.5879 12 6 1.1812 -4.7528 -0.6091 13 6 1.9577 -6.0713 -0.6404 14 6 2.3192 -6.4813 0.7907 15 7 3.0375 -5.3721 1.4332 16 6 4.2403 -5.5744 2.0066 17 8 4.8786 -4.6293 2.4312 18 6 4.7802 -6.9337 2.1188 19 6 6.0932 -7.2736 2.1414 20 7 6.3129 -8.5599 2.2494 21 6 5.2794 -9.3360 2.3196 22 16 3.8392 -8.4172 2.2558 23 6 2.4200 -4.0390 1.4392 24 1 -0.4851 0.8401 -0.0004 25 1 0.3556 -2.3880 0.0005 26 1 0.9019 -4.4717 -1.6245 27 1 0.2815 -4.8755 -0.0060 28 1 1.3410 -6.8460 -1.0961 29 1 2.8697 -5.9426 -1.2233 30 1 1.4089 -6.6988 1.3494 31 1 2.9563 -7.3653 0.7677 32 1 6.8889 -6.5461 2.0759 33 1 5.3211 -10.4113 2.4109 34 1 3.1240 -3.3120 1.8444 35 1 1.5178 -4.0570 2.0505 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998653082.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:54 Heat of formation + Delta-G solvation = 7.929142 kcal Electronic energy + Delta-G solvation = -19715.086360 eV Core-core repulsion = 16646.568328 eV Total energy + Delta-G solvation = -3068.518032 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.50219 -40.40025 -38.66846 -36.29515 -34.04823 -32.83065 -31.88193 -29.95673 -27.54245 -26.01963 -25.92608 -23.40133 -22.84987 -21.32927 -20.51384 -19.45521 -19.12105 -17.69800 -17.49458 -16.92166 -16.47074 -15.97195 -15.57864 -15.48628 -15.25648 -15.07637 -14.88228 -14.74656 -14.08333 -14.00512 -13.80118 -13.14614 -12.90255 -12.70331 -12.53747 -12.28560 -12.17553 -11.94036 -11.78289 -11.38918 -11.34212 -11.08991 -10.72486 -10.45908 -9.95732 -9.82421 -9.04551 -7.99653 -5.28986 -0.75784 0.12192 0.55910 1.40126 1.44311 1.46706 1.52931 1.77818 2.04137 2.52773 3.24306 3.33464 3.50308 3.67473 3.96755 3.98678 4.10183 4.16382 4.26387 4.33213 4.36157 4.50441 4.67009 4.81134 4.84128 4.96349 5.00948 5.10097 5.33298 5.39455 5.41936 5.51339 6.22497 6.23453 6.56663 6.91413 7.30156 8.01399 8.27421 9.22611 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.030921 B = 0.004209 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.321487 B = 6651.321161 C = 7300.583458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.064 4.064 3 Si 0.966 3.034 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.249 4.249 8 H 0.064 0.936 9 N -0.728 5.728 10 C 0.166 3.834 11 H 0.030 0.970 12 C -0.118 4.118 13 C -0.118 4.118 14 C 0.090 3.910 15 N -0.598 5.598 16 C 0.584 3.416 17 O -0.579 6.579 18 C -0.321 4.321 19 C 0.108 3.892 20 N -0.504 5.504 21 C 0.027 3.973 22 S 0.257 5.743 23 C 0.109 3.891 24 H 0.254 0.746 25 H 0.379 0.621 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.119 0.881 29 H 0.060 0.940 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.175 0.825 33 H 0.247 0.753 34 H 0.051 0.949 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.045 -25.152 2.032 25.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.257 4.257 3 Si 0.795 3.205 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.381 4.381 8 H 0.082 0.918 9 N -0.368 5.368 10 C 0.056 3.944 11 H 0.048 0.952 12 C -0.156 4.156 13 C -0.157 4.157 14 C -0.032 4.032 15 N -0.330 5.330 16 C 0.372 3.628 17 O -0.460 6.460 18 C -0.445 4.445 19 C -0.050 4.050 20 N -0.218 5.218 21 C -0.266 4.266 22 S 0.512 5.488 23 C -0.017 4.017 24 H 0.062 0.938 25 H 0.212 0.788 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.137 0.863 29 H 0.079 0.921 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.192 0.808 33 H 0.263 0.737 34 H 0.070 0.930 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.935 -25.097 2.297 25.507 hybrid contribution 0.958 2.266 0.098 2.462 sum 4.893 -22.830 2.394 23.471 Atomic orbital electron populations 1.69772 1.06260 1.26298 1.58870 1.25444 0.96355 1.00673 1.03196 0.85331 0.77421 0.79705 0.78036 1.20443 1.21459 1.21016 1.19475 0.91034 0.85525 1.42045 0.91798 1.42476 1.05555 1.00475 1.88296 1.20656 0.94742 0.86259 0.92714 0.95206 1.21748 0.98528 0.94062 1.01292 1.21857 1.01002 0.97337 0.95479 1.22488 0.98087 0.88090 0.94580 1.48153 1.18432 1.11312 1.55075 1.17320 0.80891 0.86949 0.77677 1.90822 1.59654 1.44106 1.51465 1.25581 0.99213 0.98636 1.21068 1.22202 0.94667 0.92397 0.95693 1.66370 1.34381 1.03226 1.17837 1.29772 0.91203 1.07058 0.98551 1.83779 1.09598 0.92941 1.62477 1.22332 0.96842 0.82142 1.00343 0.93754 0.78826 0.91675 0.90851 0.86321 0.92124 0.88226 0.88091 0.80756 0.73743 0.93034 0.91347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.49 13.06 21.65 0.28 -58.21 16 2 C -0.06 -3.70 5.50 84.86 0.47 -3.23 16 3 Si 0.97 47.36 29.55 68.60 2.03 49.39 16 4 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 5 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 6 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 7 C -0.25 -14.25 9.93 84.03 0.83 -13.41 16 8 H 0.06 3.67 7.83 -2.91 -0.02 3.65 16 9 N -0.73 -36.75 5.13 -322.57 -1.65 -38.40 16 10 C 0.17 6.62 2.92 45.07 0.13 6.76 16 11 H 0.03 1.31 8.08 -2.39 -0.02 1.29 16 12 C -0.12 -3.40 5.35 30.62 0.16 -3.24 16 13 C -0.12 -2.36 6.08 30.67 0.19 -2.17 16 14 C 0.09 1.76 5.55 86.36 0.48 2.24 16 15 N -0.60 -18.15 2.97 -823.59 -2.45 -20.60 16 16 C 0.58 19.47 7.60 86.45 0.66 20.13 16 17 O -0.58 -25.02 16.41 -4.33 -0.07 -25.09 16 18 C -0.32 -7.86 5.79 23.88 0.14 -7.72 16 19 C 0.11 2.62 11.20 84.23 0.94 3.57 16 20 N -0.50 -10.23 10.51 -202.57 -2.13 -12.36 16 21 C 0.03 0.33 12.22 130.60 1.60 1.92 16 22 S 0.26 3.33 19.43 -56.49 -1.10 2.23 16 23 C 0.11 4.17 6.03 86.36 0.52 4.69 16 24 H 0.25 14.95 8.31 -92.70 -0.77 14.18 16 25 H 0.38 19.93 7.80 -92.71 -0.72 19.20 16 26 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 28 H 0.12 1.47 8.14 -2.39 -0.02 1.46 16 29 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.10 1.54 3.92 -19.07 -0.07 1.47 16 32 H 0.18 4.37 8.06 -2.91 -0.02 4.34 16 33 H 0.25 0.56 8.06 -2.91 -0.02 0.54 16 34 H 0.05 2.41 7.00 -2.38 -0.02 2.39 16 35 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -75.88 304.47 1.36 -74.52 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.33 Total: 19.00 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: 6.12 Total: 9.53 kcal Atomic # 7 Polarization: -123.62 SS G_CDS: -5.95 Total: -129.57 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -0.07 Total: -25.09 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.39 kcal Atomic # 16 Polarization: 3.33 SS G_CDS: -1.10 Total: 2.23 kcal Total: -75.88 1.36 -74.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998653082.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.452 kcal (2) G-P(sol) polarization free energy of solvation -75.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds