Wall clock time and date at job start Wed Apr 15 2020 11:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00403 * 2 1 4 4 H 1.48500 * 109.47324 * 239.99860 * 3 2 1 5 5 H 1.48502 * 109.47077 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47314 * 119.99884 * 3 2 1 7 7 C 1.38813 * 119.99659 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00038 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00083 * 179.97438 * 9 7 2 11 11 H 1.08991 * 109.52419 * 34.91258 * 10 9 7 12 12 C 1.53038 * 109.50104 * 154.99754 * 10 9 7 13 13 C 1.53038 * 109.54115 * 181.31494 * 12 10 9 14 14 C 1.53190 * 109.31263 * 298.63412 * 13 12 10 15 15 N 1.46928 * 108.77514 * 54.63034 * 14 13 12 16 16 C 1.34779 * 120.62690 * 126.41762 * 15 14 13 17 17 O 1.21686 * 120.00148 * 176.41113 * 16 15 14 18 18 C 1.46687 * 120.00222 * 356.40535 * 16 15 14 19 19 C 1.35657 * 126.13275 * 224.35568 * 18 16 15 20 20 N 1.30941 * 114.19277 * 179.97438 * 19 18 16 21 21 C 1.29429 * 117.36522 * 0.02562 * 20 19 18 22 22 S 1.70953 * 110.38707 * 359.72286 * 21 20 19 23 23 C 1.46925 * 118.74051 * 306.39222 * 15 14 13 24 24 H 0.97006 * 119.99351 * 0.02562 * 1 2 3 25 25 H 0.97006 * 120.00084 * 359.97438 * 9 7 2 26 26 H 1.08997 * 109.45904 * 301.33732 * 12 10 9 27 27 H 1.09003 * 109.46010 * 61.30497 * 12 10 9 28 28 H 1.08994 * 109.49470 * 58.58575 * 13 12 10 29 29 H 1.08997 * 109.49795 * 178.68391 * 13 12 10 30 30 H 1.08998 * 109.59215 * 174.42320 * 14 13 12 31 31 H 1.09009 * 109.59011 * 294.84919 * 14 13 12 32 32 H 1.08006 * 122.90401 * 359.97438 * 19 18 16 33 33 H 1.07996 * 124.80657 * 180.02562 * 21 20 19 34 34 H 1.08996 * 109.58857 * 293.82125 * 23 15 14 35 35 H 1.09004 * 109.58277 * 173.39401 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0579 -3.6568 0.0005 11 1 2.9695 -3.5511 0.5885 12 6 1.1810 -4.7529 0.6103 13 6 1.9571 -6.0715 0.6408 14 6 2.3169 -6.4808 -0.7909 15 7 3.0359 -5.3721 -1.4332 16 6 4.2385 -5.5745 -2.0070 17 8 4.7943 -4.6639 -2.5925 18 6 4.8776 -6.8923 -1.9257 19 6 6.1819 -7.1326 -1.6404 20 7 6.5035 -8.4018 -1.6285 21 6 5.5651 -9.2558 -1.8839 22 16 4.0870 -8.4474 -2.1739 23 6 2.4188 -4.0388 -1.4385 24 1 -0.4849 0.8402 -0.0004 25 1 0.3554 -2.3880 0.0005 26 1 0.9023 -4.4720 1.6259 27 1 0.2810 -4.8752 0.0075 28 1 2.8697 -5.9431 1.2227 29 1 1.3404 -6.8462 1.0965 30 1 2.9536 -7.3653 -0.7691 31 1 1.4060 -6.6975 -1.3490 32 1 6.8935 -6.3451 -1.4405 33 1 5.6961 -10.3276 -1.9055 34 1 1.5162 -4.0563 -2.0492 35 1 3.1228 -3.3119 -1.8438 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998653083.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:56 Heat of formation + Delta-G solvation = 31.076523 kcal Electronic energy + Delta-G solvation = -19721.651806 eV Core-core repulsion = 16654.137520 eV Total energy + Delta-G solvation = -3067.514286 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.38885 -39.38373 -37.30993 -34.56919 -32.43634 -31.38321 -30.75177 -28.34621 -26.52206 -24.93337 -24.05384 -21.99303 -21.73677 -20.10507 -19.47340 -18.35481 -17.12351 -16.75876 -16.35517 -15.43800 -15.04774 -14.53105 -14.40746 -14.26100 -14.12716 -13.93346 -13.46469 -13.37080 -12.80175 -12.54402 -12.37047 -11.83779 -11.46389 -11.16900 -10.85566 -10.78522 -10.65093 -10.27170 -10.21447 -9.91273 -9.88419 -9.71943 -9.49307 -9.22859 -9.10889 -8.45866 -7.04157 -5.81269 -3.11508 0.11537 0.88479 1.30290 2.37838 2.87257 3.17136 3.44900 3.48801 3.50658 4.01090 4.47113 4.55878 4.80213 4.89029 4.99516 5.11933 5.18755 5.43035 5.46537 5.53616 5.74118 5.80670 5.85602 5.96085 6.10196 6.14537 6.28381 6.40931 6.61675 6.75843 6.92975 7.31482 7.47521 7.68815 8.15036 8.36759 9.48712 10.01656 10.37069 11.40801 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.030227 B = 0.004222 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.088846 B = 6629.762879 C = 7225.994857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.008 4.008 3 Si 0.908 3.092 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.246 4.246 8 H 0.071 0.929 9 N -0.717 5.717 10 C 0.168 3.832 11 H 0.052 0.948 12 C -0.126 4.126 13 C -0.127 4.127 14 C 0.096 3.904 15 N -0.595 5.595 16 C 0.587 3.413 17 O -0.522 6.522 18 C -0.272 4.272 19 C 0.099 3.901 20 N -0.473 5.473 21 C 0.012 3.988 22 S 0.179 5.821 23 C 0.093 3.907 24 H 0.257 0.743 25 H 0.386 0.614 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.185 0.815 33 H 0.203 0.797 34 H 0.066 0.934 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.031 -21.586 -1.725 22.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.205 4.205 3 Si 0.738 3.262 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.377 4.377 8 H 0.089 0.911 9 N -0.357 5.357 10 C 0.057 3.943 11 H 0.070 0.930 12 C -0.165 4.165 13 C -0.166 4.166 14 C -0.028 4.028 15 N -0.328 5.328 16 C 0.371 3.629 17 O -0.399 6.399 18 C -0.396 4.396 19 C -0.057 4.057 20 N -0.186 5.186 21 C -0.283 4.283 22 S 0.433 5.567 23 C -0.031 4.031 24 H 0.066 0.934 25 H 0.220 0.780 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.202 0.798 33 H 0.220 0.780 34 H 0.084 0.916 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.945 -21.503 -2.156 22.169 hybrid contribution 0.741 1.426 0.109 1.611 sum 5.685 -20.076 -2.047 20.966 Atomic orbital electron populations 1.69653 1.05143 1.25949 1.57218 1.24744 0.95508 0.97766 1.02463 0.86263 0.78577 0.83316 0.78032 1.21065 1.21643 1.21161 1.19228 0.91097 0.83959 1.43420 0.91057 1.42364 1.05815 0.99514 1.88050 1.20492 0.95055 0.86555 0.92217 0.93000 1.21837 0.98691 0.93945 1.02016 1.21859 1.01060 0.98383 0.95326 1.22100 0.97041 0.89093 0.94608 1.48197 1.18140 1.11652 1.54840 1.16850 0.81144 0.85342 0.79544 1.90869 1.63443 1.43005 1.42607 1.25906 0.99113 0.98234 1.16378 1.22156 0.93124 0.92976 0.97414 1.66247 1.34153 1.01637 1.16524 1.28860 0.92331 1.04854 1.02302 1.84097 1.13378 0.96445 1.62827 1.22921 0.97944 0.80740 1.01462 0.93366 0.77998 0.91178 0.91890 0.91495 0.90730 0.90375 0.90738 0.79777 0.78043 0.91615 0.88857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.74 13.06 55.49 0.72 -27.02 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 3 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.25 -6.80 9.93 -15.06 -0.15 -6.95 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.72 -17.52 5.12 -53.31 -0.27 -17.79 16 10 C 0.17 3.26 2.92 -67.81 -0.20 3.06 16 11 H 0.05 1.08 8.08 -51.93 -0.42 0.66 16 12 C -0.13 -1.91 5.35 -26.69 -0.14 -2.06 16 13 C -0.13 -1.48 6.08 -26.61 -0.16 -1.64 16 14 C 0.10 1.10 5.91 -3.71 -0.02 1.07 16 15 N -0.60 -9.14 2.97 -174.30 -0.52 -9.65 16 16 C 0.59 9.57 7.57 -12.85 -0.10 9.48 16 17 O -0.52 -10.60 16.52 5.20 0.09 -10.51 16 18 C -0.27 -3.48 5.53 -37.10 -0.21 -3.69 16 19 C 0.10 1.22 11.30 -18.85 -0.21 1.01 16 20 N -0.47 -5.34 10.51 -15.38 -0.16 -5.50 16 21 C 0.01 0.09 12.22 51.75 0.63 0.73 16 22 S 0.18 1.53 20.02 -107.50 -2.15 -0.62 16 23 C 0.09 1.73 6.01 -3.71 -0.02 1.71 16 24 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.39 9.89 7.80 -40.82 -0.32 9.57 16 26 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.76 3.95 -29.83 -0.12 0.64 16 31 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 32 H 0.19 2.16 8.06 -52.48 -0.42 1.73 16 33 H 0.20 0.85 8.06 -52.49 -0.42 0.42 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.09 2.03 7.02 -51.93 -0.36 1.66 16 LS Contribution 305.37 15.07 4.60 4.60 Total: -1.00 -32.80 305.37 -7.54 -40.34 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -4.15 Total: 6.28 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -0.68 Total: 2.39 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: -0.23 Total: -59.97 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.51 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -2.15 Total: -0.62 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.80 -7.54 -40.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998653083.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.415 kcal (2) G-P(sol) polarization free energy of solvation -32.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds