Wall clock time and date at job start Wed Apr 15 2020 11:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00403 * 2 1 4 4 H 1.48500 * 109.47324 * 239.99860 * 3 2 1 5 5 H 1.48502 * 109.47077 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47314 * 119.99884 * 3 2 1 7 7 C 1.38813 * 119.99659 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00038 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00083 * 179.97438 * 9 7 2 11 11 H 1.08991 * 109.52419 * 34.91258 * 10 9 7 12 12 C 1.53038 * 109.50104 * 154.99754 * 10 9 7 13 13 C 1.53038 * 109.54115 * 181.31494 * 12 10 9 14 14 C 1.53190 * 109.31263 * 298.63412 * 13 12 10 15 15 N 1.46928 * 108.77514 * 54.63034 * 14 13 12 16 16 C 1.34779 * 120.62690 * 126.41762 * 15 14 13 17 17 O 1.21686 * 120.00148 * 176.41113 * 16 15 14 18 18 C 1.46687 * 120.00222 * 356.40535 * 16 15 14 19 19 C 1.35657 * 126.13275 * 224.35568 * 18 16 15 20 20 N 1.30941 * 114.19277 * 179.97438 * 19 18 16 21 21 C 1.29429 * 117.36522 * 0.02562 * 20 19 18 22 22 S 1.70953 * 110.38707 * 359.72286 * 21 20 19 23 23 C 1.46925 * 118.74051 * 306.39222 * 15 14 13 24 24 H 0.97006 * 119.99351 * 0.02562 * 1 2 3 25 25 H 0.97006 * 120.00084 * 359.97438 * 9 7 2 26 26 H 1.08997 * 109.45904 * 301.33732 * 12 10 9 27 27 H 1.09003 * 109.46010 * 61.30497 * 12 10 9 28 28 H 1.08994 * 109.49470 * 58.58575 * 13 12 10 29 29 H 1.08997 * 109.49795 * 178.68391 * 13 12 10 30 30 H 1.08998 * 109.59215 * 174.42320 * 14 13 12 31 31 H 1.09009 * 109.59011 * 294.84919 * 14 13 12 32 32 H 1.08006 * 122.90401 * 359.97438 * 19 18 16 33 33 H 1.07996 * 124.80657 * 180.02562 * 21 20 19 34 34 H 1.08996 * 109.58857 * 293.82125 * 23 15 14 35 35 H 1.09004 * 109.58277 * 173.39401 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0579 -3.6568 0.0005 11 1 2.9695 -3.5511 0.5885 12 6 1.1810 -4.7529 0.6103 13 6 1.9571 -6.0715 0.6408 14 6 2.3169 -6.4808 -0.7909 15 7 3.0359 -5.3721 -1.4332 16 6 4.2385 -5.5745 -2.0070 17 8 4.7943 -4.6639 -2.5925 18 6 4.8776 -6.8923 -1.9257 19 6 6.1819 -7.1326 -1.6404 20 7 6.5035 -8.4018 -1.6285 21 6 5.5651 -9.2558 -1.8839 22 16 4.0870 -8.4474 -2.1739 23 6 2.4188 -4.0388 -1.4385 24 1 -0.4849 0.8402 -0.0004 25 1 0.3554 -2.3880 0.0005 26 1 0.9023 -4.4720 1.6259 27 1 0.2810 -4.8752 0.0075 28 1 2.8697 -5.9431 1.2227 29 1 1.3404 -6.8462 1.0965 30 1 2.9536 -7.3653 -0.7691 31 1 1.4060 -6.6975 -1.3490 32 1 6.8935 -6.3451 -1.4405 33 1 5.6961 -10.3276 -1.9055 34 1 1.5162 -4.0563 -2.0492 35 1 3.1228 -3.3119 -1.8438 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998653083.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:56 Heat of formation + Delta-G solvation = 7.227755 kcal Electronic energy + Delta-G solvation = -19722.685966 eV Core-core repulsion = 16654.137520 eV Total energy + Delta-G solvation = -3068.548447 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.51662 -40.38373 -38.69104 -36.28901 -34.04045 -32.82544 -31.89591 -29.95914 -27.52195 -26.04086 -25.91604 -23.38233 -22.86204 -21.33747 -20.49623 -19.46160 -19.12518 -17.81621 -17.48842 -16.89931 -16.39677 -15.95347 -15.56896 -15.51160 -15.24549 -15.10997 -14.92855 -14.76365 -14.05751 -13.98089 -13.78570 -13.14202 -12.90146 -12.68072 -12.54805 -12.28293 -12.16659 -11.95070 -11.78684 -11.39133 -11.37338 -11.09258 -10.74319 -10.44566 -9.98174 -9.83929 -9.05220 -7.99822 -5.29210 -0.70653 0.07666 0.54223 1.41415 1.44459 1.46934 1.52923 1.72264 2.02153 2.52702 3.24289 3.33381 3.49179 3.68133 3.96612 3.98681 4.11686 4.16893 4.26344 4.33149 4.35486 4.51248 4.67691 4.81011 4.83770 4.95881 5.00293 5.09935 5.33070 5.38546 5.41686 5.51050 6.22119 6.23057 6.55939 6.90103 7.29898 8.01120 8.26899 9.22495 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.030227 B = 0.004222 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.088846 B = 6629.762879 C = 7225.994857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.064 4.064 3 Si 0.967 3.033 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.249 4.249 8 H 0.065 0.935 9 N -0.728 5.728 10 C 0.167 3.833 11 H 0.032 0.968 12 C -0.118 4.118 13 C -0.119 4.119 14 C 0.090 3.910 15 N -0.594 5.594 16 C 0.584 3.416 17 O -0.578 6.578 18 C -0.315 4.315 19 C 0.102 3.898 20 N -0.501 5.501 21 C 0.032 3.968 22 S 0.247 5.753 23 C 0.108 3.892 24 H 0.254 0.746 25 H 0.379 0.621 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.117 0.883 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.175 0.825 33 H 0.248 0.752 34 H 0.066 0.934 35 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.879 -25.079 -1.419 25.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.257 4.257 3 Si 0.796 3.204 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.381 4.381 8 H 0.083 0.917 9 N -0.368 5.368 10 C 0.057 3.943 11 H 0.050 0.950 12 C -0.156 4.156 13 C -0.157 4.157 14 C -0.032 4.032 15 N -0.326 5.326 16 C 0.371 3.629 17 O -0.459 6.459 18 C -0.439 4.439 19 C -0.055 4.055 20 N -0.215 5.215 21 C -0.261 4.261 22 S 0.502 5.498 23 C -0.017 4.017 24 H 0.062 0.938 25 H 0.212 0.788 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.135 0.865 30 H 0.119 0.881 31 H 0.116 0.884 32 H 0.192 0.808 33 H 0.264 0.736 34 H 0.084 0.916 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.792 -25.075 -1.834 25.594 hybrid contribution 0.825 2.326 -0.005 2.468 sum 5.617 -22.749 -1.839 23.504 Atomic orbital electron populations 1.69779 1.06289 1.26296 1.58849 1.25455 0.96358 1.00710 1.03182 0.85324 0.77414 0.79663 0.78048 1.21019 1.21504 1.20378 1.19483 0.91065 0.85494 1.42065 0.91701 1.42484 1.05566 1.00489 1.88258 1.20654 0.94820 0.86237 0.92610 0.94996 1.21746 0.98519 0.94111 1.01264 1.21853 1.00988 0.97266 0.95618 1.22456 0.97975 0.88285 0.94440 1.48192 1.18279 1.11256 1.54891 1.17326 0.80818 0.86306 0.78408 1.90825 1.64793 1.45328 1.44988 1.25546 0.99994 0.98728 1.19607 1.22157 0.92912 0.93706 0.96736 1.66324 1.35340 1.01257 1.18566 1.29677 0.91543 1.06410 0.98520 1.83770 1.12133 0.92539 1.61387 1.22353 0.96909 0.82101 1.00333 0.93762 0.78843 0.91670 0.90982 0.92051 0.86505 0.88113 0.88448 0.80770 0.73622 0.91556 0.93012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.51 13.06 21.65 0.28 -58.23 16 2 C -0.06 -3.72 5.50 84.86 0.47 -3.25 16 3 Si 0.97 47.26 29.55 68.60 2.03 49.29 16 4 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 5 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 7 C -0.25 -14.22 9.93 84.03 0.83 -13.38 16 8 H 0.07 3.70 7.83 -2.91 -0.02 3.68 16 9 N -0.73 -36.71 5.12 -322.58 -1.65 -38.36 16 10 C 0.17 6.62 2.92 45.07 0.13 6.75 16 11 H 0.03 1.39 8.08 -2.39 -0.02 1.37 16 12 C -0.12 -3.42 5.35 30.62 0.16 -3.26 16 13 C -0.12 -2.39 6.08 30.67 0.19 -2.21 16 14 C 0.09 1.80 5.91 86.36 0.51 2.32 16 15 N -0.59 -18.12 2.97 -823.59 -2.45 -20.56 16 16 C 0.58 19.46 7.57 86.45 0.65 20.12 16 17 O -0.58 -24.96 16.52 -4.30 -0.07 -25.03 16 18 C -0.31 -7.72 5.53 23.88 0.13 -7.58 16 19 C 0.10 2.46 11.30 84.23 0.95 3.41 16 20 N -0.50 -10.12 10.51 -202.57 -2.13 -12.25 16 21 C 0.03 0.39 12.22 130.60 1.60 1.98 16 22 S 0.25 3.27 20.02 -56.49 -1.13 2.14 16 23 C 0.11 4.17 6.01 86.36 0.52 4.69 16 24 H 0.25 14.95 8.31 -92.70 -0.77 14.18 16 25 H 0.38 19.95 7.80 -92.70 -0.72 19.22 16 26 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.10 1.57 3.95 -16.44 -0.06 1.50 16 31 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 32 H 0.18 4.29 8.06 -2.91 -0.02 4.27 16 33 H 0.25 0.55 8.06 -2.91 -0.02 0.53 16 34 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.05 2.41 7.02 -2.38 -0.02 2.40 16 Total: -1.00 -75.57 305.37 1.37 -74.21 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 0.34 Total: 19.21 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: 6.15 Total: 9.59 kcal Atomic # 7 Polarization: -123.46 SS G_CDS: -5.95 Total: -129.41 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -0.07 Total: -25.03 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Atomic # 16 Polarization: 3.27 SS G_CDS: -1.13 Total: 2.14 kcal Total: -75.57 1.37 -74.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998653083.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.434 kcal (2) G-P(sol) polarization free energy of solvation -75.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds