Wall clock time and date at job start Wed Apr 15 2020 11:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86794 * 119.99983 * 2 1 4 4 H 1.48506 * 109.47063 * 240.00118 * 3 2 1 5 5 H 1.48503 * 109.47099 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47512 * 119.99924 * 3 2 1 7 7 C 1.38812 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00323 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00187 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00105 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.49898 * 324.93633 * 10 9 7 12 12 C 1.53112 * 109.51184 * 204.87423 * 10 9 7 13 13 C 1.53040 * 109.49973 * 178.68343 * 12 10 9 14 14 C 1.53198 * 109.33855 * 61.34703 * 13 12 10 15 15 N 1.46924 * 108.77576 * 305.34899 * 14 13 12 16 16 C 1.34775 * 120.62657 * 233.58345 * 15 14 13 17 17 O 1.21636 * 119.99463 * 173.54590 * 16 15 14 18 18 C 1.47104 * 120.00520 * 353.55262 * 16 15 14 19 19 C 1.38378 * 127.99869 * 155.51713 * 18 16 15 20 20 C 1.37576 * 111.26381 * 179.97438 * 19 18 16 21 21 N 1.29557 * 117.94666 * 359.97438 * 20 19 18 22 22 S 1.56305 * 110.38202 * 359.70050 * 21 20 19 23 23 C 1.46923 * 118.73814 * 53.60712 * 15 14 13 24 24 H 0.96991 * 120.00133 * 0.02562 * 1 2 3 25 25 H 0.97007 * 119.99942 * 0.02562 * 9 7 2 26 26 H 1.08999 * 109.50600 * 58.66117 * 12 10 9 27 27 H 1.08992 * 109.45113 * 298.67375 * 12 10 9 28 28 H 1.08999 * 109.50061 * 301.38535 * 13 12 10 29 29 H 1.08999 * 109.49738 * 181.31507 * 13 12 10 30 30 H 1.09002 * 109.58134 * 65.13812 * 14 13 12 31 31 H 1.09004 * 109.58666 * 185.41434 * 14 13 12 32 32 H 1.08004 * 124.36952 * 0.03403 * 19 18 16 33 33 H 1.07999 * 121.02762 * 179.97438 * 20 19 18 34 34 H 1.08999 * 109.58707 * 66.17766 * 23 15 14 35 35 H 1.09004 * 109.58483 * 186.60387 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3257 -2.3881 0.0016 10 6 2.0582 -3.6568 0.0027 11 1 2.9684 -3.5519 -0.5876 12 6 1.1800 -4.7549 -0.6033 13 6 1.9573 -6.0729 -0.6321 14 6 2.3208 -6.4789 0.7996 15 7 3.0406 -5.3684 1.4378 16 6 4.2447 -5.5689 2.0092 17 8 4.8833 -4.6229 2.4296 18 6 4.7866 -6.9316 2.1242 19 6 6.1120 -7.3153 2.2286 20 6 6.2299 -8.6830 2.3185 21 7 5.1438 -9.3889 2.2952 22 16 3.8932 -8.4596 2.1706 23 6 2.4227 -4.0354 1.4416 24 1 -0.4850 0.8400 -0.0004 25 1 0.3556 -2.3881 0.0016 26 1 0.8989 -4.4769 -1.6191 27 1 0.2816 -4.8764 0.0016 28 1 2.8685 -5.9452 -1.2164 29 1 1.3405 -6.8492 -1.0850 30 1 1.4112 -6.6950 1.3602 31 1 2.9558 -7.3646 0.7783 32 1 6.9463 -6.6295 2.2392 33 1 7.1980 -9.1538 2.4059 34 1 1.5215 -4.0522 2.0545 35 1 3.1272 -3.3073 1.8437 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999285657.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:59 Heat of formation + Delta-G solvation = 28.445473 kcal Electronic energy + Delta-G solvation = -19696.682257 eV Core-core repulsion = 16629.053880 eV Total energy + Delta-G solvation = -3067.628377 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.15092 -39.17869 -37.29275 -34.58932 -32.48724 -31.74274 -31.12477 -28.46411 -26.62448 -24.79489 -24.05843 -22.02004 -21.93392 -20.06519 -19.24066 -18.38747 -17.12111 -16.84748 -16.15964 -15.53202 -15.05569 -14.65664 -14.55211 -14.21512 -13.83636 -13.57026 -13.42702 -13.35470 -12.87989 -12.52149 -12.37876 -11.57429 -11.51333 -11.19144 -10.89801 -10.84953 -10.66473 -10.58268 -10.26067 -10.03426 -9.89483 -9.81675 -9.68688 -9.11672 -8.88773 -8.46746 -7.03720 -5.80925 -3.11143 0.14627 1.03822 1.67116 2.05098 2.90363 3.13522 3.44967 3.48904 3.50728 4.31086 4.55322 4.72563 4.78365 4.88727 4.97885 5.15346 5.38550 5.42414 5.47520 5.54280 5.61080 5.74368 5.85141 5.94786 6.09963 6.14515 6.27907 6.28680 6.41508 6.61546 6.76431 6.93255 7.44956 7.69504 8.14724 8.37168 9.49104 10.02130 10.37509 11.41163 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.031343 B = 0.004184 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.126485 B = 6690.323701 C = 7347.690800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.009 4.009 3 Si 0.907 3.093 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.246 4.246 8 H 0.072 0.928 9 N -0.717 5.717 10 C 0.168 3.832 11 H 0.052 0.948 12 C -0.127 4.127 13 C -0.127 4.127 14 C 0.097 3.903 15 N -0.598 5.598 16 C 0.588 3.412 17 O -0.522 6.522 18 C -0.259 4.259 19 C -0.119 4.119 20 C 0.061 3.939 21 N -0.539 5.539 22 S 0.427 5.573 23 C 0.093 3.907 24 H 0.257 0.743 25 H 0.386 0.614 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.174 0.826 33 H 0.180 0.820 34 H 0.067 0.933 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.386 -19.492 2.117 20.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.205 4.205 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.377 4.377 8 H 0.090 0.910 9 N -0.358 5.358 10 C 0.056 3.944 11 H 0.070 0.930 12 C -0.165 4.165 13 C -0.166 4.166 14 C -0.028 4.028 15 N -0.331 5.331 16 C 0.373 3.627 17 O -0.398 6.398 18 C -0.392 4.392 19 C -0.154 4.154 20 C -0.132 4.132 21 N -0.367 5.367 22 S 0.583 5.417 23 C -0.030 4.030 24 H 0.066 0.934 25 H 0.220 0.780 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.191 0.809 33 H 0.197 0.803 34 H 0.085 0.915 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.255 -20.341 2.347 21.140 hybrid contribution 1.796 1.861 0.097 2.588 sum 7.051 -18.480 2.445 19.930 Atomic orbital electron populations 1.69648 1.05133 1.25951 1.57256 1.24741 0.95502 0.97756 1.02497 0.86265 0.78570 0.83339 0.78024 1.21180 1.21661 1.21075 1.19233 0.91109 0.83955 1.43355 0.91040 1.42366 1.05814 0.99522 1.88071 1.20510 0.95047 0.86539 0.92264 0.92967 1.21851 0.98689 0.93866 1.02092 1.21861 1.01169 0.98507 0.95058 1.22098 0.97063 0.88576 0.95032 1.48151 1.18182 1.11679 1.55086 1.16839 0.81263 0.85719 0.78837 1.90844 1.58179 1.41748 1.49069 1.27010 0.99346 1.00647 1.12237 1.22119 0.96805 0.95819 1.00619 1.22236 0.98051 0.90584 1.02280 1.72149 1.05284 1.36061 1.23204 1.81889 1.13271 0.88300 1.58285 1.22919 0.97863 0.80705 1.01553 0.93370 0.77999 0.91115 0.91802 0.91404 0.90538 0.90335 0.90931 0.80862 0.80290 0.91493 0.88777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.62 13.06 55.49 0.72 -26.89 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 3 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.25 -6.74 9.93 -15.06 -0.15 -6.89 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.72 -17.36 5.13 -53.27 -0.27 -17.64 16 10 C 0.17 3.21 2.92 -67.78 -0.20 3.01 16 11 H 0.05 1.08 8.08 -51.93 -0.42 0.66 16 12 C -0.13 -1.88 5.36 -26.65 -0.14 -2.02 16 13 C -0.13 -1.44 6.08 -26.61 -0.16 -1.60 16 14 C 0.10 1.08 5.67 -3.71 -0.02 1.06 16 15 N -0.60 -8.95 2.97 -174.16 -0.52 -9.47 16 16 C 0.59 9.39 7.66 -12.66 -0.10 9.29 16 17 O -0.52 -10.35 16.45 5.25 0.09 -10.27 16 18 C -0.26 -3.23 6.13 -35.94 -0.22 -3.45 16 19 C -0.12 -1.26 10.48 -39.77 -0.42 -1.67 16 20 C 0.06 0.57 11.15 -18.75 -0.21 0.36 16 21 N -0.54 -5.86 11.29 21.63 0.24 -5.62 16 22 S 0.43 4.27 19.70 -107.50 -2.12 2.15 16 23 C 0.09 1.70 6.03 -3.72 -0.02 1.68 16 24 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.39 9.80 7.80 -40.82 -0.32 9.48 16 26 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.70 3.76 -24.77 -0.09 0.61 16 32 H 0.17 1.62 8.06 -52.48 -0.42 1.20 16 33 H 0.18 1.10 8.06 -52.49 -0.42 0.68 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.09 2.01 7.00 -51.93 -0.36 1.65 16 LS Contribution 304.11 15.07 4.58 4.58 Total: -1.00 -32.36 304.11 -8.15 -40.51 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -4.12 Total: 5.83 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -1.73 Total: -0.57 kcal Atomic # 7 Polarization: -59.80 SS G_CDS: 0.18 Total: -59.62 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.09 Total: -10.27 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Atomic # 16 Polarization: 4.27 SS G_CDS: -2.12 Total: 2.15 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.36 -8.15 -40.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999285657.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.955 kcal (2) G-P(sol) polarization free energy of solvation -32.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds