Wall clock time and date at job start Wed Apr 15 2020 11:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86794 * 119.99983 * 2 1 4 4 H 1.48506 * 109.47063 * 240.00118 * 3 2 1 5 5 H 1.48503 * 109.47099 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47512 * 119.99924 * 3 2 1 7 7 C 1.38812 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00323 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00187 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00105 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.49898 * 324.93633 * 10 9 7 12 12 C 1.53112 * 109.51184 * 204.87423 * 10 9 7 13 13 C 1.53040 * 109.49973 * 178.68343 * 12 10 9 14 14 C 1.53198 * 109.33855 * 61.34703 * 13 12 10 15 15 N 1.46924 * 108.77576 * 305.34899 * 14 13 12 16 16 C 1.34775 * 120.62657 * 233.58345 * 15 14 13 17 17 O 1.21636 * 119.99463 * 173.54590 * 16 15 14 18 18 C 1.47104 * 120.00520 * 353.55262 * 16 15 14 19 19 C 1.38378 * 127.99869 * 155.51713 * 18 16 15 20 20 C 1.37576 * 111.26381 * 179.97438 * 19 18 16 21 21 N 1.29557 * 117.94666 * 359.97438 * 20 19 18 22 22 S 1.56305 * 110.38202 * 359.70050 * 21 20 19 23 23 C 1.46923 * 118.73814 * 53.60712 * 15 14 13 24 24 H 0.96991 * 120.00133 * 0.02562 * 1 2 3 25 25 H 0.97007 * 119.99942 * 0.02562 * 9 7 2 26 26 H 1.08999 * 109.50600 * 58.66117 * 12 10 9 27 27 H 1.08992 * 109.45113 * 298.67375 * 12 10 9 28 28 H 1.08999 * 109.50061 * 301.38535 * 13 12 10 29 29 H 1.08999 * 109.49738 * 181.31507 * 13 12 10 30 30 H 1.09002 * 109.58134 * 65.13812 * 14 13 12 31 31 H 1.09004 * 109.58666 * 185.41434 * 14 13 12 32 32 H 1.08004 * 124.36952 * 0.03403 * 19 18 16 33 33 H 1.07999 * 121.02762 * 179.97438 * 20 19 18 34 34 H 1.08999 * 109.58707 * 66.17766 * 23 15 14 35 35 H 1.09004 * 109.58483 * 186.60387 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3257 -2.3881 0.0016 10 6 2.0582 -3.6568 0.0027 11 1 2.9684 -3.5519 -0.5876 12 6 1.1800 -4.7549 -0.6033 13 6 1.9573 -6.0729 -0.6321 14 6 2.3208 -6.4789 0.7996 15 7 3.0406 -5.3684 1.4378 16 6 4.2447 -5.5689 2.0092 17 8 4.8833 -4.6229 2.4296 18 6 4.7866 -6.9316 2.1242 19 6 6.1120 -7.3153 2.2286 20 6 6.2299 -8.6830 2.3185 21 7 5.1438 -9.3889 2.2952 22 16 3.8932 -8.4596 2.1706 23 6 2.4227 -4.0354 1.4416 24 1 -0.4850 0.8400 -0.0004 25 1 0.3556 -2.3881 0.0016 26 1 0.8989 -4.4769 -1.6191 27 1 0.2816 -4.8764 0.0016 28 1 2.8685 -5.9452 -1.2164 29 1 1.3405 -6.8492 -1.0850 30 1 1.4112 -6.6950 1.3602 31 1 2.9558 -7.3646 0.7783 32 1 6.9463 -6.6295 2.2392 33 1 7.1980 -9.1538 2.4059 34 1 1.5215 -4.0522 2.0545 35 1 3.1272 -3.3073 1.8437 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999285657.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:59 Heat of formation + Delta-G solvation = 5.779718 kcal Electronic energy + Delta-G solvation = -19697.665118 eV Core-core repulsion = 16629.053880 eV Total energy + Delta-G solvation = -3068.611238 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.34667 -40.07283 -38.64124 -36.28252 -34.05502 -32.85930 -32.52343 -30.09518 -27.70529 -25.96541 -25.79471 -23.39310 -22.98079 -21.37827 -20.26747 -19.47229 -19.11222 -17.76914 -17.35830 -16.91413 -16.37424 -16.08244 -15.59489 -15.50082 -15.32874 -15.10500 -14.69620 -14.31605 -14.06442 -13.99601 -13.72969 -13.12786 -12.88437 -12.54840 -12.46911 -12.27626 -12.16817 -11.92279 -11.78026 -11.52931 -11.36187 -11.20788 -11.05542 -10.77688 -9.84798 -9.66011 -9.02803 -7.97998 -5.27191 -0.75670 0.17662 0.87572 1.22240 1.45648 1.47926 1.54135 1.74416 1.97688 2.54232 3.30145 3.35993 3.67204 3.95892 3.99117 4.00776 4.06027 4.15424 4.27902 4.36385 4.51550 4.66944 4.72591 4.82622 4.86167 4.88769 5.01056 5.12339 5.34481 5.41381 5.44042 5.50848 5.53228 6.24387 6.25379 6.92012 7.31836 8.03493 8.29130 9.24331 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.031343 B = 0.004184 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.126485 B = 6690.323701 C = 7347.690800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.064 4.064 3 Si 0.966 3.034 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.248 4.248 8 H 0.065 0.935 9 N -0.728 5.728 10 C 0.166 3.834 11 H 0.031 0.969 12 C -0.118 4.118 13 C -0.119 4.119 14 C 0.091 3.909 15 N -0.597 5.597 16 C 0.586 3.414 17 O -0.575 6.575 18 C -0.294 4.294 19 C -0.110 4.110 20 C 0.068 3.932 21 N -0.553 5.553 22 S 0.474 5.526 23 C 0.108 3.892 24 H 0.253 0.747 25 H 0.379 0.621 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.118 0.882 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.181 0.819 33 H 0.214 0.786 34 H 0.070 0.930 35 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.816 -22.265 1.893 23.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.257 4.257 3 Si 0.795 3.205 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.380 4.380 8 H 0.083 0.917 9 N -0.368 5.368 10 C 0.056 3.944 11 H 0.049 0.951 12 C -0.157 4.157 13 C -0.158 4.158 14 C -0.032 4.032 15 N -0.329 5.329 16 C 0.373 3.627 17 O -0.456 6.456 18 C -0.427 4.427 19 C -0.146 4.146 20 C -0.124 4.124 21 N -0.382 5.382 22 S 0.630 5.370 23 C -0.017 4.017 24 H 0.062 0.938 25 H 0.212 0.788 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.136 0.864 30 H 0.122 0.878 31 H 0.111 0.889 32 H 0.198 0.802 33 H 0.230 0.770 34 H 0.088 0.912 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.688 -23.189 2.107 23.969 hybrid contribution 1.722 2.581 0.180 3.108 sum 7.409 -20.607 2.287 22.018 Atomic orbital electron populations 1.69774 1.06279 1.26266 1.58941 1.25446 0.96340 1.00683 1.03271 0.85330 0.77402 0.79709 0.78046 1.20447 1.21598 1.20963 1.19484 0.91068 0.85488 1.41912 0.91683 1.42486 1.05571 1.00490 1.88275 1.20677 0.94773 0.86206 0.92752 0.95053 1.21759 0.98551 0.93976 1.01365 1.21862 1.01120 0.97430 0.95349 1.22450 0.98080 0.87704 0.94926 1.48136 1.18289 1.11299 1.55143 1.17294 0.80870 0.86738 0.77786 1.90807 1.59606 1.43869 1.51293 1.26729 1.00908 0.99978 1.15122 1.22380 0.96419 0.96701 0.99091 1.22569 0.99033 0.89825 1.00964 1.72156 1.06062 1.36457 1.23537 1.81605 1.12272 0.85817 1.57258 1.22357 0.96956 0.82000 1.00361 0.93798 0.78837 0.91643 0.90794 0.91936 0.86382 0.87801 0.88944 0.80216 0.76969 0.91193 0.92816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.19 13.06 21.65 0.28 -57.91 16 2 C -0.06 -3.71 5.50 84.86 0.47 -3.25 16 3 Si 0.97 46.92 29.55 68.60 2.03 48.95 16 4 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 5 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 6 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 7 C -0.25 -14.00 9.93 84.03 0.83 -13.16 16 8 H 0.07 3.68 7.83 -2.91 -0.02 3.66 16 9 N -0.73 -36.27 5.13 -322.46 -1.65 -37.92 16 10 C 0.17 6.47 2.92 45.09 0.13 6.61 16 11 H 0.03 1.35 8.08 -2.39 -0.02 1.33 16 12 C -0.12 -3.35 5.36 30.65 0.16 -3.19 16 13 C -0.12 -2.35 6.08 30.67 0.19 -2.16 16 14 C 0.09 1.79 5.67 86.36 0.49 2.28 16 15 N -0.60 -17.64 2.97 -823.15 -2.45 -20.09 16 16 C 0.59 18.81 7.66 86.57 0.66 19.48 16 17 O -0.58 -23.88 16.45 -4.14 -0.07 -23.94 16 18 C -0.29 -6.92 6.13 24.63 0.15 -6.77 16 19 C -0.11 -2.12 10.48 22.15 0.23 -1.89 16 20 C 0.07 1.05 11.15 84.87 0.95 1.99 16 21 N -0.55 -10.17 11.29 -85.47 -0.96 -11.14 16 22 S 0.47 8.04 19.70 -56.49 -1.11 6.92 16 23 C 0.11 4.06 6.03 86.36 0.52 4.58 16 24 H 0.25 14.86 8.31 -92.72 -0.77 14.09 16 25 H 0.38 19.72 7.80 -92.70 -0.72 19.00 16 26 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.09 1.47 3.76 -19.65 -0.07 1.40 16 32 H 0.18 3.14 8.06 -2.91 -0.02 3.11 16 33 H 0.21 1.73 8.06 -2.91 -0.02 1.71 16 34 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.05 2.44 7.00 -2.39 -0.02 2.42 16 Total: -1.00 -72.82 304.11 1.18 -71.64 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 0.33 Total: 18.96 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: 4.79 Total: 4.52 kcal Atomic # 7 Polarization: -122.27 SS G_CDS: -4.78 Total: -127.05 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.07 Total: -23.94 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Atomic # 16 Polarization: 8.04 SS G_CDS: -1.11 Total: 6.92 kcal Total: -72.82 1.18 -71.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999285657.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.420 kcal (2) G-P(sol) polarization free energy of solvation -72.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds