Wall clock time and date at job start Wed Apr 15 2020 11:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99742 * 2 1 4 4 H 1.48497 * 109.47157 * 270.00231 * 3 2 1 5 5 H 1.48498 * 109.46925 * 30.00750 * 3 2 1 6 6 H 1.48507 * 109.46807 * 150.00415 * 3 2 1 7 7 C 1.38816 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99878 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00150 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00040 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.49611 * 34.93212 * 10 9 7 12 12 C 1.53039 * 109.49669 * 154.99964 * 10 9 7 13 13 C 1.53043 * 109.53778 * 181.31605 * 12 10 9 14 14 C 1.53193 * 109.31085 * 298.63163 * 13 12 10 15 15 N 1.46929 * 108.77533 * 54.63769 * 14 13 12 16 16 C 1.34772 * 120.63385 * 126.36483 * 15 14 13 17 17 O 1.21628 * 120.00094 * 186.37526 * 16 15 14 18 18 C 1.47107 * 119.99692 * 6.38097 * 16 15 14 19 19 C 1.38390 * 127.99269 * 205.33553 * 18 16 15 20 20 C 1.37571 * 111.25952 * 180.29993 * 19 18 16 21 21 N 1.29558 * 117.95035 * 359.47342 * 20 19 18 22 22 S 1.56310 * 110.37891 * 0.52015 * 21 20 19 23 23 C 1.46933 * 118.73626 * 306.64085 * 15 14 13 24 24 H 0.96995 * 120.00012 * 359.97438 * 1 2 3 25 25 H 0.97002 * 119.99803 * 359.97438 * 9 7 2 26 26 H 1.08993 * 109.46300 * 61.29426 * 12 10 9 27 27 H 1.09007 * 109.45707 * 301.33183 * 12 10 9 28 28 H 1.08993 * 109.49638 * 178.68128 * 13 12 10 29 29 H 1.09005 * 109.49765 * 58.58599 * 13 12 10 30 30 H 1.08994 * 109.59048 * 294.85010 * 14 13 12 31 31 H 1.08998 * 109.70062 * 174.48549 * 14 13 12 32 32 H 1.08000 * 124.36949 * 0.03759 * 19 18 16 33 33 H 1.08000 * 121.02502 * 179.73860 * 20 19 18 34 34 H 1.08996 * 109.58277 * 173.14265 * 23 15 14 35 35 H 1.08993 * 109.58476 * 293.57263 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0904 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 1 2.9696 -3.5506 0.5878 12 6 1.1814 -4.7529 0.6092 13 6 1.9576 -6.0715 0.6397 14 6 2.3175 -6.4808 -0.7920 15 7 3.0366 -5.3720 -1.4342 16 6 4.2396 -5.5740 -2.0071 17 8 4.8770 -4.6294 -2.4324 18 6 4.7818 -6.9370 -2.1182 19 6 6.1082 -7.3215 -2.2075 20 6 6.2257 -8.6888 -2.3047 21 7 5.1391 -9.3943 -2.2893 22 16 3.8882 -8.4647 -2.1697 23 6 2.4218 -4.0374 -1.4346 24 1 -0.4850 0.8400 0.0004 25 1 0.3557 -2.3881 0.0002 26 1 0.2814 -4.8752 0.0066 27 1 0.9027 -4.4720 1.6249 28 1 1.3410 -6.8461 1.0954 29 1 2.8703 -5.9430 1.2217 30 1 1.4067 -6.6975 -1.3501 31 1 2.9534 -7.3658 -0.7723 32 1 6.9430 -6.6364 -2.2057 33 1 7.1941 -9.1598 -2.3868 34 1 3.1274 -3.3103 -1.8365 35 1 1.5197 -4.0509 -2.0460 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999285658.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:01 Heat of formation + Delta-G solvation = 28.424082 kcal Electronic energy + Delta-G solvation = -19697.560619 eV Core-core repulsion = 16629.931314 eV Total energy + Delta-G solvation = -3067.629305 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.15859 -39.18193 -37.30627 -34.59797 -32.49040 -31.74409 -31.13323 -28.47373 -26.62490 -24.80249 -24.06002 -22.02453 -21.94001 -20.06630 -19.23983 -18.38648 -17.12414 -16.85194 -16.16541 -15.53206 -15.05711 -14.65665 -14.55486 -14.21460 -13.84659 -13.56942 -13.42869 -13.35861 -12.88061 -12.52824 -12.38654 -11.57314 -11.51245 -11.19025 -10.89875 -10.86910 -10.66419 -10.58932 -10.23473 -10.03679 -9.89034 -9.81753 -9.69114 -9.12359 -8.88822 -8.47104 -7.04040 -5.81288 -3.11462 0.14648 1.03583 1.66985 2.05077 2.89677 3.13533 3.44028 3.49586 3.50995 4.31054 4.55028 4.72584 4.78230 4.88540 4.97781 5.15238 5.38443 5.42441 5.47476 5.54128 5.60922 5.74176 5.85563 5.94573 6.09914 6.14411 6.27789 6.28569 6.41308 6.61385 6.76849 6.93174 7.44754 7.69752 8.14545 8.36769 9.48844 10.01831 10.37207 11.40857 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.031371 B = 0.004182 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.325927 B = 6693.700937 C = 7348.060002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.009 4.009 3 Si 0.907 3.093 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.245 4.245 8 H 0.072 0.928 9 N -0.717 5.717 10 C 0.167 3.833 11 H 0.052 0.948 12 C -0.127 4.127 13 C -0.127 4.127 14 C 0.097 3.903 15 N -0.597 5.597 16 C 0.588 3.412 17 O -0.522 6.522 18 C -0.259 4.259 19 C -0.119 4.119 20 C 0.061 3.939 21 N -0.539 5.539 22 S 0.427 5.573 23 C 0.094 3.906 24 H 0.256 0.744 25 H 0.386 0.614 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.174 0.826 33 H 0.180 0.820 34 H 0.094 0.906 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.414 -19.526 -2.042 20.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.205 4.205 3 Si 0.738 3.262 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.376 4.376 8 H 0.090 0.910 9 N -0.358 5.358 10 C 0.056 3.944 11 H 0.070 0.930 12 C -0.165 4.165 13 C -0.166 4.166 14 C -0.028 4.028 15 N -0.331 5.331 16 C 0.374 3.626 17 O -0.398 6.398 18 C -0.392 4.392 19 C -0.154 4.154 20 C -0.131 4.131 21 N -0.367 5.367 22 S 0.583 5.417 23 C -0.030 4.030 24 H 0.066 0.934 25 H 0.220 0.780 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.191 0.809 33 H 0.197 0.803 34 H 0.112 0.888 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.289 -20.381 -2.279 21.179 hybrid contribution 1.785 1.867 -0.094 2.585 sum 7.074 -18.513 -2.373 19.960 Atomic orbital electron populations 1.69658 1.05135 1.25829 1.57338 1.24744 0.95503 0.97759 1.02519 0.86190 0.78722 0.83651 0.77652 1.21562 1.21751 1.20648 1.19279 0.91139 0.83942 1.43223 0.90986 1.42369 1.05818 0.99515 1.88083 1.20412 0.95076 0.86576 0.92326 0.92998 1.21841 0.98700 0.93864 1.02098 1.21860 1.01180 0.98496 0.95057 1.22102 0.97090 0.88609 0.94968 1.48155 1.18335 1.11655 1.54946 1.16835 0.81226 0.85707 0.78879 1.90842 1.58196 1.41847 1.48947 1.27011 0.99331 1.00647 1.12239 1.22119 0.96777 0.95818 1.00666 1.22235 0.98042 0.90602 1.02262 1.72153 1.05257 1.36024 1.23244 1.81887 1.13254 0.88277 1.58330 1.22827 0.97949 0.80690 1.01566 0.93424 0.77995 0.91797 0.91116 0.90531 0.91404 0.90330 0.90936 0.80867 0.80285 0.88779 0.91493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.61 13.06 55.49 0.72 -26.88 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 3 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.24 -6.72 9.93 -15.06 -0.15 -6.87 16 8 H 0.07 1.97 7.83 -52.48 -0.41 1.55 16 9 N -0.72 -17.36 5.12 -53.53 -0.27 -17.63 16 10 C 0.17 3.20 2.91 -68.03 -0.20 3.01 16 11 H 0.05 1.07 8.08 -51.93 -0.42 0.65 16 12 C -0.13 -1.88 5.36 -26.69 -0.14 -2.02 16 13 C -0.13 -1.44 6.08 -26.61 -0.16 -1.60 16 14 C 0.10 1.08 5.69 -3.71 -0.02 1.06 16 15 N -0.60 -8.95 2.98 -174.42 -0.52 -9.47 16 16 C 0.59 9.38 7.66 -12.66 -0.10 9.29 16 17 O -0.52 -10.34 16.46 5.25 0.09 -10.26 16 18 C -0.26 -3.22 6.12 -35.93 -0.22 -3.44 16 19 C -0.12 -1.26 10.48 -39.77 -0.42 -1.67 16 20 C 0.06 0.57 11.14 -18.75 -0.21 0.36 16 21 N -0.54 -5.85 11.29 21.63 0.24 -5.61 16 22 S 0.43 4.26 19.73 -107.50 -2.12 2.14 16 23 C 0.09 1.70 6.00 -3.93 -0.02 1.68 16 24 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 25 H 0.39 9.80 7.80 -40.82 -0.32 9.48 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.70 3.76 -24.97 -0.09 0.61 16 32 H 0.17 1.62 8.06 -52.49 -0.42 1.19 16 33 H 0.18 1.10 8.06 -52.49 -0.42 0.68 16 34 H 0.09 2.01 7.00 -51.93 -0.36 1.64 16 35 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 304.11 15.07 4.58 4.58 Total: -1.00 -32.37 304.11 -8.16 -40.53 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -4.12 Total: 5.77 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -1.74 Total: -0.57 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: 0.18 Total: -59.59 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.26 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Atomic # 16 Polarization: 4.26 SS G_CDS: -2.12 Total: 2.14 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.37 -8.16 -40.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999285658.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.953 kcal (2) G-P(sol) polarization free energy of solvation -32.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds