Wall clock time and date at job start Wed Apr 15 2020 11:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99742 * 2 1 4 4 H 1.48497 * 109.47157 * 270.00231 * 3 2 1 5 5 H 1.48498 * 109.46925 * 30.00750 * 3 2 1 6 6 H 1.48507 * 109.46807 * 150.00415 * 3 2 1 7 7 C 1.38816 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99878 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00150 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00040 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.49611 * 34.93212 * 10 9 7 12 12 C 1.53039 * 109.49669 * 154.99964 * 10 9 7 13 13 C 1.53043 * 109.53778 * 181.31605 * 12 10 9 14 14 C 1.53193 * 109.31085 * 298.63163 * 13 12 10 15 15 N 1.46929 * 108.77533 * 54.63769 * 14 13 12 16 16 C 1.34772 * 120.63385 * 126.36483 * 15 14 13 17 17 O 1.21628 * 120.00094 * 186.37526 * 16 15 14 18 18 C 1.47107 * 119.99692 * 6.38097 * 16 15 14 19 19 C 1.38390 * 127.99269 * 205.33553 * 18 16 15 20 20 C 1.37571 * 111.25952 * 180.29993 * 19 18 16 21 21 N 1.29558 * 117.95035 * 359.47342 * 20 19 18 22 22 S 1.56310 * 110.37891 * 0.52015 * 21 20 19 23 23 C 1.46933 * 118.73626 * 306.64085 * 15 14 13 24 24 H 0.96995 * 120.00012 * 359.97438 * 1 2 3 25 25 H 0.97002 * 119.99803 * 359.97438 * 9 7 2 26 26 H 1.08993 * 109.46300 * 61.29426 * 12 10 9 27 27 H 1.09007 * 109.45707 * 301.33183 * 12 10 9 28 28 H 1.08993 * 109.49638 * 178.68128 * 13 12 10 29 29 H 1.09005 * 109.49765 * 58.58599 * 13 12 10 30 30 H 1.08994 * 109.59048 * 294.85010 * 14 13 12 31 31 H 1.08998 * 109.70062 * 174.48549 * 14 13 12 32 32 H 1.08000 * 124.36949 * 0.03759 * 19 18 16 33 33 H 1.08000 * 121.02502 * 179.73860 * 20 19 18 34 34 H 1.08996 * 109.58277 * 173.14265 * 23 15 14 35 35 H 1.08993 * 109.58476 * 293.57263 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0904 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 1 2.9696 -3.5506 0.5878 12 6 1.1814 -4.7529 0.6092 13 6 1.9576 -6.0715 0.6397 14 6 2.3175 -6.4808 -0.7920 15 7 3.0366 -5.3720 -1.4342 16 6 4.2396 -5.5740 -2.0071 17 8 4.8770 -4.6294 -2.4324 18 6 4.7818 -6.9370 -2.1182 19 6 6.1082 -7.3215 -2.2075 20 6 6.2257 -8.6888 -2.3047 21 7 5.1391 -9.3943 -2.2893 22 16 3.8882 -8.4647 -2.1697 23 6 2.4218 -4.0374 -1.4346 24 1 -0.4850 0.8400 0.0004 25 1 0.3557 -2.3881 0.0002 26 1 0.2814 -4.8752 0.0066 27 1 0.9027 -4.4720 1.6249 28 1 1.3410 -6.8461 1.0954 29 1 2.8703 -5.9430 1.2217 30 1 1.4067 -6.6975 -1.3501 31 1 2.9534 -7.3658 -0.7723 32 1 6.9430 -6.6364 -2.2057 33 1 7.1941 -9.1598 -2.3868 34 1 3.1274 -3.3103 -1.8365 35 1 1.5197 -4.0509 -2.0460 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999285658.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:01 Heat of formation + Delta-G solvation = 5.742991 kcal Electronic energy + Delta-G solvation = -19698.544145 eV Core-core repulsion = 16629.931314 eV Total energy + Delta-G solvation = -3068.612831 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.35475 -40.07488 -38.65494 -36.28812 -34.06057 -32.86285 -32.52492 -30.10729 -27.70489 -25.96971 -25.79925 -23.39630 -22.98611 -21.37686 -20.26742 -19.47157 -19.11415 -17.77304 -17.36302 -16.91855 -16.37069 -16.08486 -15.59603 -15.50907 -15.32595 -15.10755 -14.70133 -14.31266 -14.06716 -14.00239 -13.73331 -13.12943 -12.90792 -12.55285 -12.46795 -12.24697 -12.15350 -11.92538 -11.78337 -11.53311 -11.36318 -11.21187 -11.06416 -10.77651 -9.84914 -9.65993 -9.03224 -7.98343 -5.27491 -0.75498 0.17516 0.87556 1.22342 1.45352 1.47050 1.54995 1.73849 1.97717 2.53925 3.30207 3.35875 3.66937 3.95721 3.98985 4.00676 4.06051 4.15367 4.28475 4.36630 4.51501 4.66791 4.72548 4.82704 4.86139 4.88763 5.00972 5.12249 5.34361 5.41712 5.43983 5.50821 5.53266 6.24198 6.25249 6.91925 7.31652 8.03191 8.28832 9.24184 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.031371 B = 0.004182 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.325927 B = 6693.700937 C = 7348.060002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.065 4.065 3 Si 0.966 3.034 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.274 1.274 7 C -0.247 4.247 8 H 0.065 0.935 9 N -0.728 5.728 10 C 0.166 3.834 11 H 0.031 0.969 12 C -0.118 4.118 13 C -0.119 4.119 14 C 0.092 3.908 15 N -0.596 5.596 16 C 0.586 3.414 17 O -0.575 6.575 18 C -0.294 4.294 19 C -0.110 4.110 20 C 0.068 3.932 21 N -0.553 5.553 22 S 0.474 5.526 23 C 0.108 3.892 24 H 0.253 0.747 25 H 0.379 0.621 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.118 0.882 29 H 0.062 0.938 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.181 0.819 33 H 0.214 0.786 34 H 0.053 0.947 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.856 -22.303 -1.814 23.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.258 4.258 3 Si 0.795 3.205 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.199 1.199 7 C -0.378 4.378 8 H 0.083 0.917 9 N -0.368 5.368 10 C 0.056 3.944 11 H 0.049 0.951 12 C -0.157 4.157 13 C -0.158 4.158 14 C -0.032 4.032 15 N -0.329 5.329 16 C 0.373 3.627 17 O -0.456 6.456 18 C -0.427 4.427 19 C -0.146 4.146 20 C -0.124 4.124 21 N -0.382 5.382 22 S 0.630 5.370 23 C -0.017 4.017 24 H 0.062 0.938 25 H 0.212 0.788 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.136 0.864 29 H 0.081 0.919 30 H 0.122 0.878 31 H 0.111 0.889 32 H 0.198 0.802 33 H 0.230 0.770 34 H 0.072 0.928 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.733 -23.232 -2.036 24.015 hybrid contribution 1.706 2.590 -0.178 3.106 sum 7.439 -20.642 -2.215 22.053 Atomic orbital electron populations 1.69781 1.06283 1.26184 1.59016 1.25447 0.96341 1.00677 1.03302 0.85258 0.77791 0.80012 0.77427 1.21577 1.21618 1.19905 1.19520 0.91073 0.85471 1.41771 0.91666 1.42489 1.05575 1.00484 1.88278 1.20578 0.94792 0.86234 0.92818 0.95086 1.21749 0.98565 0.93990 1.01357 1.21861 1.01132 0.97406 0.95356 1.22454 0.98111 0.87740 0.94850 1.48141 1.18446 1.11259 1.55011 1.17290 0.80830 0.86727 0.77827 1.90805 1.59621 1.43964 1.51164 1.26731 1.00892 0.99971 1.15130 1.22380 0.96389 0.96696 0.99135 1.22569 0.99026 0.89847 1.00941 1.72160 1.06034 1.36419 1.23578 1.81606 1.12261 0.85804 1.57310 1.22266 0.97027 0.82001 1.00372 0.93807 0.78831 0.90794 0.91647 0.86381 0.91931 0.87805 0.88948 0.80210 0.76963 0.92798 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.18 13.06 21.65 0.28 -57.90 16 2 C -0.06 -3.73 5.50 84.86 0.47 -3.26 16 3 Si 0.97 46.94 29.55 68.60 2.03 48.96 16 4 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 5 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 6 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 7 C -0.25 -13.92 9.93 84.03 0.83 -13.09 16 8 H 0.07 3.69 7.83 -2.91 -0.02 3.67 16 9 N -0.73 -36.25 5.12 -323.26 -1.66 -37.91 16 10 C 0.17 6.46 2.91 44.93 0.13 6.59 16 11 H 0.03 1.33 8.08 -2.39 -0.02 1.31 16 12 C -0.12 -3.35 5.36 30.62 0.16 -3.19 16 13 C -0.12 -2.34 6.08 30.67 0.19 -2.16 16 14 C 0.09 1.79 5.69 86.36 0.49 2.28 16 15 N -0.60 -17.62 2.98 -823.99 -2.45 -20.08 16 16 C 0.59 18.80 7.66 86.57 0.66 19.46 16 17 O -0.57 -23.84 16.46 -4.12 -0.07 -23.91 16 18 C -0.29 -6.91 6.12 24.64 0.15 -6.76 16 19 C -0.11 -2.11 10.48 22.15 0.23 -1.88 16 20 C 0.07 1.05 11.14 84.87 0.95 1.99 16 21 N -0.55 -10.16 11.29 -85.47 -0.96 -11.12 16 22 S 0.47 8.03 19.73 -56.49 -1.11 6.91 16 23 C 0.11 4.06 6.00 86.22 0.52 4.57 16 24 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 25 H 0.38 19.72 7.80 -92.71 -0.72 18.99 16 26 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 28 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.06 1.33 8.14 -2.38 -0.02 1.32 16 30 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.09 1.47 3.76 -19.53 -0.07 1.40 16 32 H 0.18 3.13 8.06 -2.91 -0.02 3.10 16 33 H 0.21 1.73 8.06 -2.91 -0.02 1.70 16 34 H 0.05 2.44 7.00 -2.39 -0.02 2.43 16 35 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -72.82 304.11 1.17 -71.66 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: 0.33 Total: 18.81 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: 4.78 Total: 4.56 kcal Atomic # 7 Polarization: -122.21 SS G_CDS: -4.79 Total: -127.00 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.07 Total: -23.91 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.96 kcal Atomic # 16 Polarization: 8.03 SS G_CDS: -1.11 Total: 6.91 kcal Total: -72.82 1.17 -71.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999285658.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.399 kcal (2) G-P(sol) polarization free energy of solvation -72.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds